Wall clock time and date at job start Fri Apr 10 2020 18:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30444 * 125.99172 * 2 1 4 4 N 1.39928 * 108.90221 * 180.02562 * 3 2 1 5 5 C 1.46502 * 125.75794 * 180.02562 * 4 3 2 6 6 C 1.34267 * 108.48959 * 359.74857 * 4 3 2 7 7 C 1.50696 * 126.29057 * 180.24395 * 6 4 3 8 8 C 1.38041 * 107.41194 * 0.39482 * 6 4 3 9 9 C 1.47433 * 126.40896 * 179.87254 * 8 6 4 10 10 O 1.21608 * 119.99585 * 269.71314 * 9 8 6 11 11 N 1.34775 * 120.00129 * 89.71189 * 9 8 6 12 12 C 1.47144 * 120.98180 * 0.02562 * 11 9 8 13 13 C 1.53300 * 108.38418 * 129.44135 * 12 11 9 14 14 O 1.42963 * 109.22147 * 52.30441 * 13 12 11 15 15 C 1.42956 * 114.16448 * 297.41524 * 14 13 12 16 16 H 1.09000 * 109.55870 * 302.63656 * 15 14 13 17 17 C 1.53003 * 109.51542 * 182.50645 * 15 14 13 18 18 N 1.46499 * 109.46708 * 65.25233 * 17 15 14 19 19 C 1.36935 * 119.99926 * 180.02562 * 18 17 15 20 20 H 1.08005 * 119.99877 * 359.97438 * 19 18 17 21 21 C 1.38811 * 120.00369 * 179.73019 * 19 18 17 22 22 N 1.31617 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47154 * 89.99247 * 23 21 19 25 25 H 1.48496 * 109.47375 * 209.99772 * 23 21 19 26 26 H 1.48502 * 109.46736 * 329.99467 * 23 21 19 27 27 C 1.47158 * 120.98120 * 179.97438 * 11 9 8 28 28 H 1.08995 * 109.47366 * 269.96060 * 1 2 3 29 29 H 1.08998 * 109.47042 * 29.96235 * 1 2 3 30 30 H 1.08998 * 109.46722 * 149.95940 * 1 2 3 31 31 H 1.08997 * 109.46959 * 89.97176 * 5 4 3 32 32 H 1.08997 * 109.47164 * 209.97230 * 5 4 3 33 33 H 1.09005 * 109.46670 * 329.97403 * 5 4 3 34 34 H 1.09000 * 109.47090 * 270.18116 * 7 6 4 35 35 H 1.09002 * 109.47731 * 30.18190 * 7 6 4 36 36 H 1.09000 * 109.46968 * 150.18266 * 7 6 4 37 37 H 1.08997 * 109.68381 * 249.16073 * 12 11 9 38 38 H 1.08997 * 109.68327 * 9.68532 * 12 11 9 39 39 H 1.09004 * 109.51100 * 172.22397 * 13 12 11 40 40 H 1.08998 * 109.51225 * 292.37467 * 13 12 11 41 41 H 1.08998 * 109.46692 * 305.25735 * 17 15 14 42 42 H 1.08994 * 109.47584 * 185.25599 * 17 15 14 43 43 H 0.97005 * 120.00261 * 0.02562 * 18 17 15 44 44 H 0.97004 * 120.00382 * 180.02562 * 22 21 19 45 45 H 1.09000 * 109.68124 * 110.83456 * 27 11 9 46 46 H 1.09002 * 109.67788 * 350.27591 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0554 0.0000 4 7 3.6111 0.6442 -0.0006 5 6 4.7787 1.5290 -0.0003 6 6 3.6439 -0.6980 0.0046 7 6 4.8800 -1.5600 0.0112 8 6 2.3372 -1.1432 -0.0005 9 6 1.8915 -2.5485 -0.0002 10 8 1.7075 -3.1282 -1.0533 11 7 1.6881 -3.1908 1.1671 12 6 1.9037 -2.5101 2.4537 13 6 0.6595 -2.7175 3.3249 14 8 0.3566 -4.1133 3.3880 15 6 0.0314 -4.6992 2.1253 16 1 -0.8142 -4.1710 1.6848 17 6 -0.3333 -6.1718 2.3238 18 7 -1.5612 -6.2680 3.1170 19 6 -2.0833 -7.4960 3.4245 20 1 -1.5900 -8.3937 3.0818 21 6 -3.2437 -7.5874 4.1808 22 7 -3.8419 -6.4937 4.6028 23 14 -3.9554 -9.2626 4.6008 24 1 -3.3779 -9.7384 5.8835 25 1 -5.4307 -9.1550 4.7318 26 1 -3.6235 -10.2263 3.5208 27 6 1.2428 -4.5931 1.1926 28 1 -0.3634 -0.0007 1.0276 29 1 -0.3633 0.8903 -0.5132 30 1 -0.3633 -0.8896 -0.5145 31 1 5.0682 1.7481 1.0275 32 1 5.6058 1.0393 -0.5142 33 1 4.5308 2.4580 -0.5138 34 1 5.1825 -1.7691 -1.0149 35 1 5.6849 -1.0373 0.5279 36 1 4.6666 -2.4972 0.5252 37 1 2.7755 -2.9341 2.9519 38 1 2.0600 -1.4448 2.2838 39 1 0.8517 -2.3409 4.3296 40 1 -0.1835 -2.1813 2.8893 41 1 0.4774 -6.6796 2.8463 42 1 -0.4902 -6.6415 1.3529 43 1 -2.0045 -5.4618 3.4245 44 1 -4.6526 -6.5574 5.1317 45 1 2.0480 -5.2273 1.5635 46 1 0.9608 -4.9070 0.1875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673298464.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:55 Heat of formation + Delta-G solvation = 15.958774 kcal Electronic energy + Delta-G solvation = -27929.978987 eV Core-core repulsion = 24050.162080 eV Total energy + Delta-G solvation = -3879.816907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.82180 -39.95203 -38.09278 -34.97463 -34.58855 -34.31966 -32.55842 -32.03505 -30.16247 -29.86299 -28.48798 -27.51630 -26.17720 -25.27809 -23.43996 -22.81534 -21.48453 -20.66660 -19.82537 -19.09266 -17.58233 -17.05242 -16.71773 -16.30947 -16.00746 -15.77688 -15.18989 -15.01760 -14.49490 -14.38345 -14.21349 -13.91563 -13.79735 -13.61602 -13.52290 -13.14852 -13.08914 -12.98733 -12.71795 -12.60612 -12.40182 -12.30588 -12.21527 -12.08289 -11.55654 -11.04283 -10.94866 -10.84613 -10.77572 -10.41515 -10.07360 -9.89526 -9.83996 -9.64266 -9.46681 -8.83300 -8.74406 -8.48453 -6.85575 -5.69545 -2.98058 1.37698 2.01369 2.19550 2.50118 2.97114 3.48526 3.53155 3.55085 4.00029 4.04712 4.13826 4.45850 4.60695 4.66207 4.67850 4.75113 4.80301 4.92824 4.99212 5.01020 5.03417 5.15815 5.20223 5.35457 5.37793 5.41898 5.49034 5.54313 5.63410 5.67003 5.69948 5.71717 5.78430 5.93604 6.00205 6.23889 6.30964 6.40409 6.54890 6.60686 6.73695 7.30173 7.35405 7.50983 7.75201 8.12082 8.48615 9.60257 10.17666 10.53472 11.53336 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.027593 B = 0.002632 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.489576 B =10634.114588 C =10867.334999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.116 3.884 3 N -0.296 5.296 4 N -0.364 5.364 5 C 0.098 3.902 6 C 0.125 3.875 7 C -0.097 4.097 8 C -0.279 4.279 9 C 0.601 3.399 10 O -0.534 6.534 11 N -0.605 5.605 12 C 0.078 3.922 13 C 0.047 3.953 14 O -0.358 6.358 15 C 0.074 3.926 16 H 0.064 0.936 17 C 0.164 3.836 18 N -0.727 5.727 19 C -0.238 4.238 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.085 3.915 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.054 0.946 41 H 0.029 0.971 42 H 0.036 0.964 43 H 0.387 0.613 44 H 0.254 0.746 45 H 0.078 0.922 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.241 17.752 -8.230 28.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.051 4.051 3 N -0.118 5.118 4 N -0.143 5.143 5 C -0.043 4.043 6 C -0.006 4.006 7 C -0.155 4.155 8 C -0.294 4.294 9 C 0.388 3.612 10 O -0.411 6.411 11 N -0.339 5.339 12 C -0.045 4.045 13 C -0.031 4.031 14 O -0.276 6.276 15 C 0.015 3.985 16 H 0.082 0.918 17 C 0.035 3.965 18 N -0.371 5.371 19 C -0.369 4.369 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.739 3.261 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.037 4.037 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.120 0.880 40 H 0.072 0.928 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.221 0.779 44 H 0.064 0.936 45 H 0.096 0.904 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 20.285 18.537 -8.630 28.803 hybrid contribution -0.419 -1.121 0.257 1.224 sum 19.866 17.417 -8.373 27.715 Atomic orbital electron populations 1.20297 0.85921 1.04015 1.03612 1.22327 0.96905 0.88775 0.97116 1.77134 0.85822 1.22276 1.26568 1.48134 1.05928 1.03964 1.56314 1.21924 0.84044 0.94594 1.03706 1.21305 0.96036 0.84651 0.98623 1.20549 0.92242 0.98657 1.04076 1.19772 0.92186 0.94109 1.23287 1.17344 0.76420 0.84470 0.83004 1.90783 1.51525 1.67794 1.30955 1.48129 1.66927 1.13085 1.05731 1.22414 0.99547 0.98386 0.84200 1.22902 0.95331 0.84523 1.00378 1.88154 1.88904 1.21022 1.29505 1.22789 0.94738 0.97028 0.83949 0.91784 1.20617 0.90795 0.89426 0.95634 1.42234 1.25529 1.06465 1.62870 1.19227 1.05287 0.85430 1.26978 0.91142 1.24740 0.98387 0.96980 1.00924 1.69674 1.20897 1.26049 1.41472 0.86179 0.78180 0.83564 0.78209 1.21763 1.21827 1.20762 1.22362 0.97803 0.81062 1.02523 0.89868 0.90226 0.90069 0.90339 0.89307 0.88888 0.89415 0.90428 0.89372 0.90693 0.89321 0.87957 0.92792 0.95298 0.94619 0.77908 0.93581 0.90398 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.28 36.01 0.37 -0.46 16 2 C 0.12 1.41 7.15 -82.02 -0.59 0.83 16 3 N -0.30 -3.55 12.50 33.89 0.42 -3.12 16 4 N -0.36 -3.43 3.98 -63.34 -0.25 -3.68 16 5 C 0.10 0.45 11.06 59.85 0.66 1.11 16 6 C 0.12 1.24 7.01 -81.60 -0.57 0.67 16 7 C -0.10 -0.64 9.70 36.00 0.35 -0.29 16 8 C -0.28 -3.47 3.92 -105.07 -0.41 -3.88 16 9 C 0.60 8.63 6.87 -12.52 -0.09 8.54 16 10 O -0.53 -9.51 16.58 5.27 0.09 -9.42 16 11 N -0.61 -8.03 3.02 -173.57 -0.52 -8.55 16 12 C 0.08 0.86 6.54 -3.54 -0.02 0.84 16 13 C 0.05 0.60 6.98 37.31 0.26 0.86 16 14 O -0.36 -6.27 10.33 -35.23 -0.36 -6.64 16 15 C 0.07 1.27 2.81 -26.60 -0.07 1.20 16 16 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 17 C 0.16 3.38 5.93 -4.04 -0.02 3.35 16 18 N -0.73 -19.08 5.55 -59.91 -0.33 -19.41 16 19 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 20 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 22 N -0.93 -28.83 13.06 55.49 0.72 -28.10 16 23 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 C 0.09 1.24 5.93 -3.55 -0.02 1.22 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.91 8.01 -51.93 -0.42 0.50 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 0.21 7.64 -51.93 -0.40 -0.19 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.30 7.71 -51.93 -0.40 -0.10 16 36 H 0.09 0.64 7.96 -51.93 -0.41 0.23 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.90 6.34 -51.93 -0.33 0.57 16 39 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.39 10.80 7.67 -40.82 -0.31 10.48 16 44 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.10 1.56 7.08 -51.93 -0.37 1.19 16 LS Contribution 381.80 15.07 5.75 5.75 Total: -1.00 -36.88 381.80 -7.17 -44.04 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -7.25 Total: 4.88 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -0.40 Total: 6.49 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: 0.04 Total: -62.87 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.28 Total: -16.06 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.88 -7.17 -44.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673298464.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.002 kcal (2) G-P(sol) polarization free energy of solvation -36.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds