Wall clock time and date at job start Fri Apr 10 2020 18:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30444 * 125.99172 * 2 1 4 4 N 1.39928 * 108.90221 * 180.02562 * 3 2 1 5 5 C 1.46502 * 125.75794 * 180.02562 * 4 3 2 6 6 C 1.34267 * 108.48959 * 359.74857 * 4 3 2 7 7 C 1.50696 * 126.29057 * 180.24395 * 6 4 3 8 8 C 1.38041 * 107.41194 * 0.39482 * 6 4 3 9 9 C 1.47433 * 126.40896 * 179.87254 * 8 6 4 10 10 O 1.21608 * 119.99585 * 269.71314 * 9 8 6 11 11 N 1.34775 * 120.00129 * 89.71189 * 9 8 6 12 12 C 1.47144 * 120.98180 * 0.02562 * 11 9 8 13 13 C 1.53300 * 108.38418 * 129.44135 * 12 11 9 14 14 O 1.42963 * 109.22147 * 52.30441 * 13 12 11 15 15 C 1.42956 * 114.16448 * 297.41524 * 14 13 12 16 16 H 1.09000 * 109.55870 * 302.63656 * 15 14 13 17 17 C 1.53003 * 109.51542 * 182.50645 * 15 14 13 18 18 N 1.46499 * 109.46708 * 65.25233 * 17 15 14 19 19 C 1.36935 * 119.99926 * 180.02562 * 18 17 15 20 20 H 1.08005 * 119.99877 * 359.97438 * 19 18 17 21 21 C 1.38811 * 120.00369 * 179.73019 * 19 18 17 22 22 N 1.31617 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47154 * 89.99247 * 23 21 19 25 25 H 1.48496 * 109.47375 * 209.99772 * 23 21 19 26 26 H 1.48502 * 109.46736 * 329.99467 * 23 21 19 27 27 C 1.47158 * 120.98120 * 179.97438 * 11 9 8 28 28 H 1.08995 * 109.47366 * 269.96060 * 1 2 3 29 29 H 1.08998 * 109.47042 * 29.96235 * 1 2 3 30 30 H 1.08998 * 109.46722 * 149.95940 * 1 2 3 31 31 H 1.08997 * 109.46959 * 89.97176 * 5 4 3 32 32 H 1.08997 * 109.47164 * 209.97230 * 5 4 3 33 33 H 1.09005 * 109.46670 * 329.97403 * 5 4 3 34 34 H 1.09000 * 109.47090 * 270.18116 * 7 6 4 35 35 H 1.09002 * 109.47731 * 30.18190 * 7 6 4 36 36 H 1.09000 * 109.46968 * 150.18266 * 7 6 4 37 37 H 1.08997 * 109.68381 * 249.16073 * 12 11 9 38 38 H 1.08997 * 109.68327 * 9.68532 * 12 11 9 39 39 H 1.09004 * 109.51100 * 172.22397 * 13 12 11 40 40 H 1.08998 * 109.51225 * 292.37467 * 13 12 11 41 41 H 1.08998 * 109.46692 * 305.25735 * 17 15 14 42 42 H 1.08994 * 109.47584 * 185.25599 * 17 15 14 43 43 H 0.97005 * 120.00261 * 0.02562 * 18 17 15 44 44 H 0.97004 * 120.00382 * 180.02562 * 22 21 19 45 45 H 1.09000 * 109.68124 * 110.83456 * 27 11 9 46 46 H 1.09002 * 109.67788 * 350.27591 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0554 0.0000 4 7 3.6111 0.6442 -0.0006 5 6 4.7787 1.5290 -0.0003 6 6 3.6439 -0.6980 0.0046 7 6 4.8800 -1.5600 0.0112 8 6 2.3372 -1.1432 -0.0005 9 6 1.8915 -2.5485 -0.0002 10 8 1.7075 -3.1282 -1.0533 11 7 1.6881 -3.1908 1.1671 12 6 1.9037 -2.5101 2.4537 13 6 0.6595 -2.7175 3.3249 14 8 0.3566 -4.1133 3.3880 15 6 0.0314 -4.6992 2.1253 16 1 -0.8142 -4.1710 1.6848 17 6 -0.3333 -6.1718 2.3238 18 7 -1.5612 -6.2680 3.1170 19 6 -2.0833 -7.4960 3.4245 20 1 -1.5900 -8.3937 3.0818 21 6 -3.2437 -7.5874 4.1808 22 7 -3.8419 -6.4937 4.6028 23 14 -3.9554 -9.2626 4.6008 24 1 -3.3779 -9.7384 5.8835 25 1 -5.4307 -9.1550 4.7318 26 1 -3.6235 -10.2263 3.5208 27 6 1.2428 -4.5931 1.1926 28 1 -0.3634 -0.0007 1.0276 29 1 -0.3633 0.8903 -0.5132 30 1 -0.3633 -0.8896 -0.5145 31 1 5.0682 1.7481 1.0275 32 1 5.6058 1.0393 -0.5142 33 1 4.5308 2.4580 -0.5138 34 1 5.1825 -1.7691 -1.0149 35 1 5.6849 -1.0373 0.5279 36 1 4.6666 -2.4972 0.5252 37 1 2.7755 -2.9341 2.9519 38 1 2.0600 -1.4448 2.2838 39 1 0.8517 -2.3409 4.3296 40 1 -0.1835 -2.1813 2.8893 41 1 0.4774 -6.6796 2.8463 42 1 -0.4902 -6.6415 1.3529 43 1 -2.0045 -5.4618 3.4245 44 1 -4.6526 -6.5574 5.1317 45 1 2.0480 -5.2273 1.5635 46 1 0.9608 -4.9070 0.1875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673298464.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:54 Heat of formation + Delta-G solvation = -10.916473 kcal Electronic energy + Delta-G solvation = -27931.144385 eV Core-core repulsion = 24050.162080 eV Total energy + Delta-G solvation = -3880.982305 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.63398 -41.08229 -39.33663 -36.64362 -35.71775 -35.29403 -33.95454 -33.10187 -31.83664 -30.55342 -29.51309 -28.59587 -27.22391 -26.40647 -24.93848 -24.14293 -22.81168 -21.87620 -20.56362 -20.07678 -19.21527 -18.48036 -17.84716 -17.37314 -16.95091 -16.73926 -16.50235 -16.27929 -15.96945 -15.74189 -15.19888 -15.01784 -14.92944 -14.50953 -14.44544 -14.28806 -14.09958 -14.06090 -13.88372 -13.47897 -13.43281 -13.36130 -13.03288 -12.92398 -12.85752 -12.76160 -12.62854 -12.25229 -12.04636 -11.89816 -11.84484 -11.60900 -11.20039 -10.99153 -10.94150 -10.20133 -9.64452 -9.56317 -8.99077 -7.92223 -5.21690 0.63341 1.26855 1.41015 1.42998 1.49082 1.51660 1.59985 1.93673 2.58208 2.75642 3.31368 3.41744 3.49312 3.56200 3.75997 3.89040 3.92960 3.97292 4.09856 4.17652 4.26549 4.30937 4.34167 4.40725 4.44821 4.54510 4.56056 4.61825 4.65871 4.66915 4.72436 4.74238 4.82500 4.87884 4.94583 4.97209 4.99476 5.11178 5.27540 5.43013 5.50572 5.92409 6.22979 6.24868 6.29456 6.54992 7.02707 7.35240 8.09260 8.33852 9.31629 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.027593 B = 0.002632 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.489576 B =10634.114588 C =10867.334999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.103 3.897 3 N -0.319 5.319 4 N -0.358 5.358 5 C 0.086 3.914 6 C 0.137 3.863 7 C -0.096 4.096 8 C -0.312 4.312 9 C 0.607 3.393 10 O -0.577 6.577 11 N -0.602 5.602 12 C 0.087 3.913 13 C 0.041 3.959 14 O -0.385 6.385 15 C 0.087 3.913 16 H 0.047 0.953 17 C 0.161 3.839 18 N -0.741 5.741 19 C -0.246 4.246 20 H 0.079 0.921 21 C -0.078 4.078 22 N -0.970 5.970 23 Si 0.977 3.023 24 H -0.286 1.286 25 H -0.295 1.295 26 H -0.268 1.268 27 C 0.095 3.905 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.126 0.874 40 H 0.049 0.951 41 H 0.033 0.967 42 H 0.045 0.955 43 H 0.374 0.626 44 H 0.251 0.749 45 H 0.094 0.906 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.828 18.230 -8.033 30.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.063 4.063 3 N -0.141 5.141 4 N -0.137 5.137 5 C -0.053 4.053 6 C 0.004 3.996 7 C -0.154 4.154 8 C -0.327 4.327 9 C 0.395 3.605 10 O -0.456 6.456 11 N -0.335 5.335 12 C -0.035 4.035 13 C -0.036 4.036 14 O -0.303 6.303 15 C 0.028 3.972 16 H 0.065 0.935 17 C 0.034 3.966 18 N -0.384 5.384 19 C -0.377 4.377 20 H 0.097 0.903 21 C -0.270 4.270 22 N -0.621 5.621 23 Si 0.806 3.194 24 H -0.213 1.213 25 H -0.222 1.222 26 H -0.193 1.193 27 C -0.028 4.028 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.116 0.884 32 H 0.135 0.865 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.130 0.870 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.143 0.857 40 H 0.067 0.933 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.206 0.794 44 H 0.060 0.940 45 H 0.112 0.888 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 22.925 19.040 -8.436 30.972 hybrid contribution -1.104 -1.165 0.181 1.616 sum 21.820 17.875 -8.255 29.390 Atomic orbital electron populations 1.20290 0.85667 1.03674 1.04077 1.22485 0.97437 0.88909 0.97448 1.77071 0.87207 1.22480 1.27371 1.48524 1.06081 1.04414 1.54692 1.22379 0.83064 0.94409 1.05485 1.21740 0.96216 0.85161 0.96449 1.20699 0.91660 0.98132 1.04955 1.19711 0.93642 0.92863 1.26463 1.17605 0.75415 0.85048 0.82406 1.90751 1.53492 1.68944 1.32450 1.48167 1.66243 1.12554 1.06490 1.22463 0.99132 0.99190 0.82720 1.23166 0.96084 0.82160 1.02218 1.88097 1.89174 1.23525 1.29547 1.22465 0.95424 0.94702 0.84570 0.93488 1.20762 0.88730 0.92123 0.94983 1.42435 1.27131 1.05312 1.63495 1.19672 1.05283 0.86579 1.26181 0.90310 1.25621 0.99132 1.00729 1.01510 1.69842 1.21333 1.28292 1.42650 0.85086 0.76834 0.79328 0.78182 1.21328 1.22202 1.19252 1.22140 0.97061 0.82378 1.01207 0.89002 0.89261 0.91640 0.88430 0.86476 0.88545 0.88678 0.86981 0.89979 0.88776 0.87901 0.85667 0.93254 0.94913 0.93767 0.79381 0.94031 0.88830 0.88839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.67 10.28 71.24 0.73 -0.94 16 2 C 0.10 2.48 7.15 43.51 0.31 2.79 16 3 N -0.32 -7.26 12.50 -46.68 -0.58 -7.84 16 4 N -0.36 -5.89 3.98 -354.31 -1.41 -7.30 16 5 C 0.09 0.50 11.06 127.77 1.41 1.91 16 6 C 0.14 2.42 7.01 42.14 0.30 2.72 16 7 C -0.10 -0.97 9.70 71.23 0.69 -0.28 16 8 C -0.31 -7.51 3.92 -20.15 -0.08 -7.59 16 9 C 0.61 17.32 6.87 86.67 0.60 17.91 16 10 O -0.58 -20.95 16.58 -4.06 -0.07 -21.02 16 11 N -0.60 -15.54 3.02 -821.30 -2.48 -18.03 16 12 C 0.09 1.78 6.54 86.36 0.56 2.35 16 13 C 0.04 1.01 6.98 72.08 0.50 1.52 16 14 O -0.38 -13.40 10.33 -148.98 -1.54 -14.94 16 15 C 0.09 3.05 2.81 30.68 0.09 3.13 16 16 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 17 C 0.16 6.69 5.93 86.38 0.51 7.20 16 18 N -0.74 -39.56 5.55 -343.46 -1.91 -41.47 16 19 C -0.25 -14.14 9.99 84.03 0.84 -13.30 16 20 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 21 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 22 N -0.97 -61.15 13.06 21.65 0.28 -60.86 16 23 Si 0.98 47.08 29.55 68.60 2.03 49.11 16 24 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 25 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 26 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 27 C 0.10 2.74 5.93 86.34 0.51 3.25 16 28 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.06 1.57 8.01 -2.39 -0.02 1.55 16 31 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.12 0.04 7.64 -2.39 -0.02 0.02 16 33 H 0.10 0.53 8.14 -2.38 -0.02 0.52 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.11 0.35 7.71 -2.39 -0.02 0.33 16 36 H 0.08 0.97 7.96 -2.39 -0.02 0.96 16 37 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.10 1.88 6.34 -2.39 -0.02 1.86 16 39 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.37 21.53 7.67 -92.70 -0.71 20.82 16 44 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 45 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.09 2.88 7.08 -2.39 -0.02 2.86 16 Total: -1.00 -80.99 381.80 2.04 -78.95 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.28 Total: 26.86 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: 7.44 Total: 16.56 kcal Atomic # 7 Polarization: -129.41 SS G_CDS: -6.10 Total: -135.51 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -1.61 Total: -35.96 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -80.99 2.04 -78.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673298464.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.032 kcal (2) G-P(sol) polarization free energy of solvation -80.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds