Wall clock time and date at job start Fri Apr 10 2020 18:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00051 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00067 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99897 * 3 2 1 7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00368 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99845 * 179.72546 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.49862 * 59.99905 * 10 9 7 12 12 O 1.42906 * 109.46869 * 304.99983 * 11 10 9 13 13 C 1.53038 * 109.49784 * 180.02562 * 10 9 7 14 14 C 1.53100 * 109.50776 * 58.61801 * 13 10 9 15 15 C 1.53197 * 109.33134 * 61.33969 * 14 13 10 16 16 N 1.46927 * 108.77528 * 305.36729 * 15 14 13 17 17 C 1.34771 * 120.63147 * 233.58100 * 16 15 14 18 18 O 1.21284 * 119.99989 * 180.02562 * 17 16 15 19 19 C 1.50702 * 120.00127 * 0.03137 * 17 16 15 20 20 C 1.52996 * 109.46990 * 179.97438 * 19 17 16 21 21 C 1.50707 * 109.46981 * 179.97438 * 20 19 17 22 22 C 1.34666 * 126.59297 * 274.68617 * 21 20 19 23 23 N 1.34123 * 108.01762 * 179.87542 * 22 21 20 24 24 C 1.30494 * 109.25899 * 0.39862 * 23 22 21 25 25 N 1.35041 * 108.70092 * 359.75522 * 24 23 22 26 26 H 0.97003 * 126.39768 * 180.02562 * 25 24 23 27 27 C 1.46937 * 118.73675 * 53.61059 * 16 15 14 28 28 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 29 29 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 30 30 H 1.08993 * 109.47112 * 65.00298 * 11 10 9 31 31 H 1.08999 * 109.47225 * 185.00556 * 11 10 9 32 32 H 0.96702 * 113.99405 * 180.02562 * 12 11 10 33 33 H 1.09003 * 109.45804 * 178.60319 * 13 10 9 34 34 H 1.09003 * 109.45704 * 298.56048 * 13 10 9 35 35 H 1.09001 * 109.48669 * 301.38638 * 14 13 10 36 36 H 1.08998 * 109.49287 * 181.30069 * 14 13 10 37 37 H 1.08996 * 109.58625 * 185.58030 * 15 14 13 38 38 H 1.08998 * 109.70068 * 65.22372 * 15 14 13 39 39 H 1.09005 * 109.46679 * 299.99230 * 19 17 16 40 40 H 1.08989 * 109.47325 * 59.99323 * 19 17 16 41 41 H 1.08992 * 109.47358 * 299.99444 * 20 19 17 42 42 H 1.09005 * 109.47495 * 59.99975 * 20 19 17 43 43 H 1.07998 * 125.98761 * 0.02562 * 22 21 20 44 44 H 1.08004 * 125.65344 * 179.78027 * 24 23 22 45 45 H 1.08995 * 109.58441 * 186.60235 * 27 16 15 46 46 H 1.09000 * 109.70076 * 66.24335 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 -0.0051 10 6 4.1121 -2.4708 -0.0051 11 6 3.7378 -3.2767 -1.2507 12 8 2.3189 -3.4383 -1.3048 13 6 5.6168 -2.1919 -0.0114 14 6 5.9872 -1.3571 1.2174 15 6 5.6459 -2.1441 2.4867 16 7 4.2325 -2.5415 2.4311 17 6 3.3950 -2.2436 3.4441 18 8 2.2305 -2.5777 3.3864 19 6 3.9055 -1.4953 4.6485 20 6 2.7609 -1.2869 5.6422 21 6 3.2715 -0.5392 6.8469 22 6 3.8680 -1.0731 7.9297 23 7 4.1730 -0.0737 8.7705 24 6 3.7805 1.0585 8.2537 25 7 3.2127 0.8127 7.0534 26 1 2.8342 1.4712 6.4500 27 6 3.7496 -3.2705 1.2502 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3621 -0.0099 30 1 4.0775 -2.7479 -2.1412 31 1 4.2135 -4.2564 -1.2062 32 1 2.0093 -3.9413 -2.0705 33 1 6.1613 -3.1359 0.0136 34 1 5.8809 -1.6445 -0.9163 35 1 5.4245 -0.4236 1.2059 36 1 7.0550 -1.1390 1.2006 37 1 5.8149 -1.5169 3.3620 38 1 6.2734 -3.0333 2.5476 39 1 4.6997 -2.0709 5.1241 40 1 4.2958 -0.5269 4.3360 41 1 1.9671 -0.7112 5.1664 42 1 2.3702 -2.2554 5.9548 43 1 4.0681 -2.1220 8.0915 44 1 3.8918 2.0310 8.7100 45 1 2.6675 -3.3866 1.3097 46 1 4.2207 -4.2526 1.2066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673675886.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:02 Heat of formation + Delta-G solvation = -3.223166 kcal Electronic energy + Delta-G solvation = -28810.646978 eV Core-core repulsion = 24929.998280 eV Total energy + Delta-G solvation = -3880.648698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.08016 -39.94371 -37.93571 -35.75751 -33.97614 -33.74213 -32.36705 -32.24255 -31.16507 -29.45454 -28.73313 -25.84148 -25.34547 -23.59423 -23.23232 -21.76328 -21.57109 -20.78560 -19.27229 -18.20072 -17.98722 -17.73100 -16.54792 -16.30006 -15.72612 -15.50267 -15.02469 -14.73930 -14.43921 -14.22537 -14.11288 -13.81352 -13.60261 -13.38370 -13.27868 -12.99207 -12.71553 -12.55207 -12.40112 -12.07976 -11.99297 -11.76506 -11.28428 -11.11239 -11.02833 -10.91079 -10.72322 -10.55708 -10.20880 -10.08781 -10.03078 -9.96343 -9.42780 -9.26067 -8.96551 -8.85015 -8.40262 -8.09794 -7.11875 -5.53722 -2.88442 1.97311 3.05881 3.08913 3.17481 3.34996 3.40110 3.46773 3.50198 4.55241 4.65680 4.71482 4.76241 4.94746 5.00768 5.05066 5.10307 5.15972 5.21112 5.33707 5.37943 5.50111 5.51848 5.54184 5.68007 5.69477 5.76227 5.79179 5.83730 5.91631 6.01632 6.05011 6.11247 6.14376 6.18375 6.31275 6.51512 6.51801 6.67783 6.85688 7.05814 7.29309 7.92278 7.97903 8.27126 8.40788 8.66740 8.76159 9.44522 10.10798 10.26103 11.65173 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012762 B = 0.004396 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.417400 B = 6368.006377 C = 7294.163998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.003 4.003 3 Si 0.868 3.132 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.285 1.285 7 C -0.200 4.200 8 H 0.117 0.883 9 N -0.729 5.729 10 C 0.194 3.806 11 C 0.075 3.925 12 O -0.529 6.529 13 C -0.119 4.119 14 C -0.134 4.134 15 C 0.110 3.890 16 N -0.599 5.599 17 C 0.515 3.485 18 O -0.521 6.521 19 C -0.131 4.131 20 C -0.032 4.032 21 C -0.011 4.011 22 C -0.030 4.030 23 N -0.497 5.497 24 C 0.176 3.824 25 N -0.566 5.566 26 H 0.421 0.579 27 C 0.111 3.889 28 H 0.253 0.747 29 H 0.356 0.644 30 H 0.037 0.963 31 H 0.026 0.974 32 H 0.352 0.648 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.168 0.832 44 H 0.205 0.795 45 H 0.108 0.892 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.461 -3.169 7.441 16.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.197 4.197 3 Si 0.700 3.300 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.212 1.212 7 C -0.330 4.330 8 H 0.134 0.866 9 N -0.371 5.371 10 C 0.101 3.899 11 C -0.006 4.006 12 O -0.332 6.332 13 C -0.157 4.157 14 C -0.172 4.172 15 C -0.013 4.013 16 N -0.332 5.332 17 C 0.302 3.698 18 O -0.396 6.396 19 C -0.171 4.171 20 C -0.071 4.071 21 C -0.127 4.127 22 C -0.177 4.177 23 N -0.216 5.216 24 C -0.108 4.108 25 N -0.170 5.170 26 H 0.259 0.741 27 C -0.013 4.013 28 H 0.063 0.937 29 H 0.190 0.810 30 H 0.055 0.945 31 H 0.044 0.956 32 H 0.197 0.803 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.186 0.814 44 H 0.222 0.778 45 H 0.126 0.874 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.022 -3.169 8.786 16.848 hybrid contribution 0.232 1.710 -1.755 2.462 sum 14.254 -1.459 7.031 15.961 Atomic orbital electron populations 1.69678 1.04763 1.24684 1.59559 1.24614 0.95027 0.96110 1.03900 0.86805 0.78926 0.86843 0.77392 1.21717 1.22313 1.21154 1.19404 0.79920 0.95233 1.38435 0.86574 1.42802 1.04409 1.00620 1.89292 1.19918 0.89744 0.88033 0.92177 1.22647 0.83075 0.96448 0.98441 1.87043 1.20163 1.77369 1.48605 1.21684 0.95726 1.00104 0.98184 1.21895 1.00738 0.99866 0.94717 1.21632 0.82619 0.98643 0.98452 1.47786 1.08914 1.57354 1.19129 1.20314 0.85940 0.79804 0.83760 1.90755 1.16465 1.52840 1.79518 1.21636 0.99469 1.01443 0.94592 1.19812 0.97031 1.00515 0.89771 1.21437 1.07420 0.83386 1.00453 1.22088 1.04806 0.99070 0.91766 1.70251 1.22307 0.98191 1.30808 1.24915 1.00690 0.99816 0.85370 1.43378 1.46778 1.08260 1.18545 0.74124 1.22080 1.02992 0.91957 0.84277 0.93703 0.81009 0.94521 0.95636 0.80262 0.91457 0.91570 0.90957 0.91267 0.90418 0.91812 0.89073 0.89607 0.89876 0.88567 0.81436 0.77807 0.87371 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.32 13.97 55.49 0.78 -29.54 16 2 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 3 Si 0.87 22.24 27.73 -169.99 -4.71 17.52 16 4 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 5 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 6 H -0.28 -6.74 6.53 56.52 0.37 -6.38 16 7 C -0.20 -5.56 8.55 -15.06 -0.13 -5.69 16 8 H 0.12 3.60 5.49 -52.49 -0.29 3.31 16 9 N -0.73 -16.42 4.55 -47.12 -0.21 -16.63 16 10 C 0.19 3.43 0.68 -131.70 -0.09 3.34 16 11 C 0.08 1.25 6.09 37.16 0.23 1.48 16 12 O -0.53 -10.38 10.04 -35.23 -0.35 -10.73 16 13 C -0.12 -1.59 4.77 -26.66 -0.13 -1.72 16 14 C -0.13 -1.68 5.91 -26.58 -0.16 -1.83 16 15 C 0.11 1.32 6.34 -3.71 -0.02 1.30 16 16 N -0.60 -9.78 2.89 -172.76 -0.50 -10.28 16 17 C 0.51 9.21 7.70 -10.99 -0.08 9.12 16 18 O -0.52 -11.85 15.40 5.55 0.09 -11.76 16 19 C -0.13 -1.73 4.03 -27.88 -0.11 -1.84 16 20 C -0.03 -0.43 5.06 -27.88 -0.14 -0.57 16 21 C -0.01 -0.13 6.49 -81.60 -0.53 -0.66 16 22 C -0.03 -0.37 11.79 -17.82 -0.21 -0.58 16 23 N -0.50 -6.61 11.25 -14.67 -0.17 -6.78 16 24 C 0.18 1.84 13.04 -90.38 -1.18 0.66 16 25 N -0.57 -5.93 6.15 -10.30 -0.06 -5.99 16 26 H 0.42 3.52 8.96 -40.82 -0.37 3.16 16 27 C 0.11 2.01 4.92 -3.70 -0.02 1.99 16 28 H 0.25 7.87 8.31 -40.82 -0.34 7.53 16 29 H 0.36 8.03 4.29 -40.82 -0.18 7.86 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.35 5.21 9.12 45.56 0.42 5.63 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.12 6.75 -51.93 -0.35 0.77 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.80 5.93 -51.93 -0.31 0.50 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.97 7.94 -51.93 -0.41 0.56 16 40 H 0.09 1.10 7.69 -51.94 -0.40 0.70 16 41 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 42 H 0.10 1.28 8.10 -51.93 -0.42 0.86 16 43 H 0.17 1.81 8.06 -52.49 -0.42 1.38 16 44 H 0.21 1.30 8.06 -52.48 -0.42 0.88 16 45 H 0.11 2.50 5.83 -51.93 -0.30 2.20 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 363.23 15.07 5.47 5.47 Total: -1.00 -38.60 363.23 -8.35 -46.94 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -6.00 Total: 16.97 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -2.67 Total: 4.81 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -0.17 Total: -69.22 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.27 Total: -22.49 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.60 -8.35 -46.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673675886.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.719 kcal (2) G-P(sol) polarization free energy of solvation -38.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds