Wall clock time and date at job start Fri Apr 10 2020 18:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00035 * 2 1 4 4 H 1.48500 * 109.47302 * 239.99935 * 3 2 1 5 5 H 1.48503 * 109.47135 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47401 * 119.99412 * 3 2 1 7 7 C 1.38809 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00069 * 191.03865 * 7 2 1 9 9 N 1.36942 * 120.00057 * 11.04247 * 7 2 1 10 10 C 1.46932 * 120.62573 * 31.71709 * 9 7 2 11 11 C 1.53195 * 108.77372 * 126.37185 * 10 9 7 12 12 C 1.53045 * 109.31417 * 54.62920 * 11 10 9 13 13 C 1.53001 * 109.45901 * 178.62562 * 12 11 10 14 14 O 1.42895 * 109.46708 * 180.75786 * 13 12 11 15 15 N 1.46504 * 109.45717 * 58.65633 * 12 11 10 16 16 C 1.34777 * 119.99894 * 62.66062 * 15 12 11 17 17 O 1.21278 * 120.00041 * 354.88868 * 16 15 12 18 18 C 1.50705 * 119.99426 * 174.88646 * 16 15 12 19 19 C 1.53000 * 109.46677 * 180.02562 * 18 16 15 20 20 N 1.46502 * 109.47326 * 179.97438 * 19 18 16 21 21 C 1.34949 * 126.03914 * 124.99791 * 20 19 18 22 22 C 1.35308 * 107.74778 * 180.02562 * 21 20 19 23 23 C 1.39877 * 107.91945 * 359.97438 * 22 21 20 24 24 N 1.30835 * 108.19931 * 0.02562 * 23 22 21 25 25 C 1.53038 * 109.53965 * 298.63528 * 12 11 10 26 26 C 1.46923 * 120.63441 * 211.69347 * 9 7 2 27 27 H 0.97001 * 120.00466 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.58957 * 6.58035 * 10 9 7 29 29 H 1.09006 * 109.69888 * 246.22520 * 10 9 7 30 30 H 1.08993 * 109.49503 * 294.67762 * 11 10 9 31 31 H 1.09004 * 109.49787 * 174.58161 * 11 10 9 32 32 H 1.08993 * 109.47204 * 300.76015 * 13 12 11 33 33 H 1.08996 * 109.46522 * 60.75798 * 13 12 11 34 34 H 0.96700 * 113.99763 * 180.02562 * 14 13 12 35 35 H 0.96997 * 120.00081 * 242.65736 * 15 12 11 36 36 H 1.08995 * 109.47453 * 60.00532 * 18 16 15 37 37 H 1.08998 * 109.47278 * 299.99370 * 18 16 15 38 38 H 1.09002 * 109.47418 * 60.00316 * 19 18 16 39 39 H 1.08999 * 109.47381 * 300.00191 * 19 18 16 40 40 H 1.07999 * 126.12140 * 0.26482 * 21 20 19 41 41 H 1.07999 * 126.04357 * 179.97438 * 22 21 20 42 42 H 1.08000 * 125.89845 * 180.02562 * 23 22 21 43 43 H 1.08995 * 109.49571 * 181.31653 * 25 12 11 44 44 H 1.09003 * 109.49678 * 301.41658 * 25 12 11 45 45 H 1.09001 * 109.58211 * 353.41572 * 26 9 7 46 46 H 1.09003 * 109.58802 * 113.84191 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0752 -1.2107 0.1796 9 7 1.3446 -2.3772 -0.2261 10 6 0.1682 -2.4135 -1.1056 11 6 0.3869 -3.4859 -2.1775 12 6 0.7069 -4.8205 -1.5004 13 6 0.8922 -5.9017 -2.5670 14 8 1.1736 -7.1516 -1.9342 15 7 -0.3971 -5.1946 -0.6129 16 6 -1.6231 -5.4252 -1.1229 17 8 -1.8356 -5.2334 -2.3014 18 6 -2.7300 -5.9213 -0.2285 19 6 -4.0080 -6.1005 -1.0504 20 7 -5.0840 -6.5834 -0.1812 21 6 -6.2928 -6.0060 -0.0186 22 6 -6.9926 -6.7556 0.8641 23 6 -6.1839 -7.8283 1.2539 24 7 -5.0395 -7.7259 0.6281 25 6 1.9940 -4.6845 -0.6837 26 6 1.7935 -3.6257 0.4052 27 1 -0.4851 0.8400 -0.0004 28 1 0.0380 -1.4418 -1.5820 29 1 -0.7198 -2.6561 -0.5218 30 1 1.2185 -3.1947 -2.8190 31 1 -0.5171 -3.5900 -2.7778 32 1 -0.0200 -5.9903 -3.1569 33 1 1.7218 -5.6298 -3.2195 34 1 1.3035 -7.8845 -2.5516 35 1 -0.2456 -5.2764 0.3417 36 1 -2.9074 -5.1967 0.5662 37 1 -2.4428 -6.8774 0.2089 38 1 -3.8304 -6.8254 -1.8449 39 1 -4.2955 -5.1447 -1.4883 40 1 -6.6408 -5.1086 -0.5086 41 1 -7.9979 -6.5603 1.2070 42 1 -6.4571 -8.6066 1.9511 43 1 2.2339 -5.6416 -0.2207 44 1 2.8106 -4.3820 -1.3393 45 1 2.7357 -3.4537 0.9255 46 1 1.0395 -3.9685 1.1138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674299871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:13 Heat of formation + Delta-G solvation = 18.092553 kcal Electronic energy + Delta-G solvation = -28262.666225 eV Core-core repulsion = 24382.941846 eV Total energy + Delta-G solvation = -3879.724380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.20592 -40.21263 -37.72007 -36.13364 -34.34579 -34.01249 -32.04553 -30.87715 -30.27689 -29.81924 -29.23472 -26.74499 -24.72046 -23.88676 -22.31609 -21.38946 -21.15342 -20.65540 -20.06566 -18.72626 -17.63181 -17.21233 -16.85323 -16.32779 -15.89376 -15.23646 -15.00086 -14.73156 -14.42552 -14.28967 -14.06661 -13.65079 -13.46897 -13.35948 -13.18049 -13.02803 -12.80967 -12.65334 -12.39716 -12.23010 -11.86469 -11.45481 -11.43445 -11.25177 -10.89661 -10.75428 -10.71186 -10.42613 -10.31192 -10.07717 -9.98829 -9.77270 -9.59046 -9.53061 -9.11406 -8.68350 -8.60013 -8.49754 -6.63630 -5.80758 -3.29185 1.81803 2.38590 2.76434 2.88534 3.36019 3.41641 3.42367 3.48399 4.41194 4.44725 4.46852 4.70190 4.77053 4.89063 5.01767 5.22847 5.29338 5.35192 5.39091 5.45571 5.51434 5.59648 5.64628 5.70760 5.74002 5.76855 5.90333 5.91588 6.07411 6.22969 6.31451 6.49472 6.55600 6.61651 6.66690 6.74763 6.88279 6.91246 7.01598 7.35854 7.61877 7.67451 7.74140 7.76615 7.86515 8.45432 8.49614 9.20067 9.81273 10.39666 11.27067 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.003452 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.563437 B = 8109.892430 C = 9550.899381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.006 3.994 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.256 4.256 8 H 0.063 0.937 9 N -0.591 5.591 10 C 0.182 3.818 11 C -0.152 4.152 12 C 0.194 3.806 13 C 0.062 3.938 14 O -0.569 6.569 15 N -0.697 5.697 16 C 0.526 3.474 17 O -0.550 6.550 18 C -0.153 4.153 19 C 0.152 3.848 20 N -0.370 5.370 21 C 0.057 3.943 22 C -0.280 4.280 23 C 0.041 3.959 24 N -0.297 5.297 25 C -0.134 4.134 26 C 0.145 3.855 27 H 0.254 0.746 28 H 0.086 0.914 29 H 0.017 0.983 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.370 0.630 35 H 0.400 0.600 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.174 0.826 41 H 0.145 0.855 42 H 0.181 0.819 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.056 0.944 46 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.966 -14.493 -1.725 16.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.385 4.385 8 H 0.081 0.919 9 N -0.314 5.314 10 C 0.056 3.944 11 C -0.192 4.192 12 C 0.108 3.892 13 C -0.017 4.017 14 O -0.373 6.373 15 N -0.347 5.347 16 C 0.312 3.688 17 O -0.430 6.430 18 C -0.194 4.194 19 C 0.031 3.969 20 N -0.152 5.152 21 C -0.089 4.089 22 C -0.310 4.310 23 C -0.145 4.145 24 N -0.119 5.119 25 C -0.173 4.173 26 C 0.018 3.982 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.216 0.784 35 H 0.235 0.765 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.110 0.890 39 H 0.124 0.876 40 H 0.191 0.809 41 H 0.163 0.837 42 H 0.198 0.802 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -6.988 -14.279 -2.290 16.061 hybrid contribution -0.283 0.948 0.129 0.998 sum -7.271 -13.331 -2.161 15.338 Atomic orbital electron populations 1.69967 1.05265 1.25593 1.53932 1.25164 0.95383 0.98404 1.00354 0.86347 0.78844 0.83262 0.78114 1.20989 1.21611 1.20867 1.19121 0.90876 0.83992 1.44543 0.91924 1.44031 1.32816 1.03380 1.51197 1.20644 0.88140 0.96492 0.89075 1.22610 1.01792 0.94466 1.00366 1.20315 0.86499 0.92843 0.89516 1.22759 0.99811 0.83863 0.95253 1.86473 1.94337 1.18786 1.37711 1.45874 1.08674 1.68886 1.11229 1.20081 0.83341 0.77070 0.88339 1.90618 1.82453 1.52945 1.16965 1.21862 0.93557 1.04445 0.99537 1.21440 0.83976 1.01205 0.90313 1.48838 1.12105 1.19590 1.34654 1.22644 0.86603 0.99771 0.99931 1.21502 1.02944 0.99731 1.06818 1.23875 0.91497 0.99373 0.99797 1.77327 1.22320 1.03326 1.08930 1.22246 0.95497 0.99919 0.99656 1.20903 0.97727 0.87175 0.92375 0.93571 0.89612 0.96495 0.92109 0.90850 0.91709 0.93523 0.78426 0.76467 0.88435 0.87737 0.88971 0.87601 0.80908 0.83686 0.80233 0.91678 0.91034 0.92519 0.96825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.88 11.10 55.49 0.62 -25.26 16 2 C 0.01 0.16 5.04 -17.43 -0.09 0.07 16 3 Si 0.90 21.49 29.57 -169.99 -5.03 16.46 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.26 -6.88 9.58 -15.06 -0.14 -7.03 16 8 H 0.06 1.66 7.85 -52.49 -0.41 1.24 16 9 N -0.59 -14.37 2.98 -172.31 -0.51 -14.88 16 10 C 0.18 4.30 4.99 -3.71 -0.02 4.28 16 11 C -0.15 -2.98 4.71 -26.61 -0.13 -3.11 16 12 C 0.19 3.26 0.44 -131.77 -0.06 3.20 16 13 C 0.06 0.92 5.68 37.16 0.21 1.13 16 14 O -0.57 -7.66 12.84 -35.23 -0.45 -8.11 16 15 N -0.70 -10.93 3.98 -47.56 -0.19 -11.12 16 16 C 0.53 8.01 7.24 -10.98 -0.08 7.93 16 17 O -0.55 -9.53 12.23 5.56 0.07 -9.46 16 18 C -0.15 -1.90 5.89 -27.88 -0.16 -2.06 16 19 C 0.15 1.77 5.80 -4.04 -0.02 1.74 16 20 N -0.37 -4.46 3.68 -61.36 -0.23 -4.68 16 21 C 0.06 0.59 11.45 -17.23 -0.20 0.39 16 22 C -0.28 -2.77 10.80 -40.01 -0.43 -3.20 16 23 C 0.04 0.43 12.03 -17.36 -0.21 0.22 16 24 N -0.30 -3.89 12.42 30.63 0.38 -3.51 16 25 C -0.13 -2.27 4.85 -26.61 -0.13 -2.40 16 26 C 0.14 2.90 6.24 -3.71 -0.02 2.88 16 27 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 28 H 0.09 2.32 6.14 -51.93 -0.32 2.00 16 29 H 0.02 0.42 7.74 -51.93 -0.40 0.02 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.07 1.46 6.23 -51.93 -0.32 1.14 16 32 H 0.06 1.03 6.17 -51.93 -0.32 0.71 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.37 3.35 9.12 45.56 0.42 3.77 16 35 H 0.40 5.94 7.19 -40.82 -0.29 5.65 16 36 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 39 H 0.11 1.15 8.03 -51.93 -0.42 0.74 16 40 H 0.17 1.27 8.06 -52.49 -0.42 0.84 16 41 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 42 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 43 H 0.06 1.02 7.66 -51.93 -0.40 0.62 16 44 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 45 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 46 H 0.01 0.27 6.89 -51.93 -0.36 -0.08 16 LS Contribution 367.09 15.07 5.53 5.53 Total: -1.00 -32.75 367.09 -7.47 -40.22 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.18 Total: 10.76 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -1.48 Total: 4.05 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 0.07 Total: -59.46 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.38 Total: -17.57 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.75 -7.47 -40.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674299871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.312 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds