Wall clock time and date at job start Fri Apr 10 2020 18:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35453 * 125.55771 * 2 1 4 4 C 1.39841 * 107.86142 * 179.73323 * 3 2 1 5 5 C 1.37867 * 107.08790 * 359.97438 * 4 3 2 6 6 C 1.46671 * 126.23712 * 179.97438 * 5 4 3 7 7 O 1.21697 * 120.00233 * 175.01453 * 6 5 4 8 8 N 1.34782 * 119.99930 * 355.02432 * 6 5 4 9 9 C 1.46495 * 119.99945 * 185.08230 * 8 6 5 10 10 C 1.52998 * 109.47237 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.47027 * 295.00034 * 10 9 8 12 12 C 1.52998 * 109.47564 * 174.99708 * 10 9 8 13 13 N 1.46903 * 109.47037 * 54.99604 * 10 9 8 14 14 C 1.46905 * 110.99844 * 205.00271 * 13 10 9 15 15 C 1.50704 * 109.46718 * 180.02562 * 14 13 10 16 16 O 1.21286 * 119.99973 * 359.97438 * 15 14 13 17 17 N 1.34771 * 119.99664 * 179.97438 * 15 14 13 18 18 C 1.37092 * 120.00182 * 179.97438 * 17 15 14 19 19 H 1.08003 * 119.99637 * 0.02562 * 18 17 15 20 20 C 1.38947 * 120.00675 * 180.02562 * 18 17 15 21 21 N 1.31415 * 119.99631 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00585 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46695 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47038 * 119.99972 * 22 20 18 25 25 H 1.48497 * 109.46942 * 240.00080 * 22 20 18 26 26 N 1.35530 * 125.56913 * 179.68691 * 2 1 3 27 27 C 1.46501 * 125.67279 * 0.26837 * 26 2 1 28 28 H 1.08994 * 109.47082 * 90.03071 * 1 2 3 29 29 H 1.09002 * 109.46819 * 210.02745 * 1 2 3 30 30 H 1.09003 * 109.47478 * 330.02337 * 1 2 3 31 31 H 1.07997 * 126.07179 * 359.73329 * 3 2 1 32 32 H 1.08000 * 126.45545 * 179.97438 * 4 3 2 33 33 H 0.96990 * 119.99891 * 5.07429 * 8 6 5 34 34 H 1.09005 * 109.47421 * 299.99584 * 9 8 6 35 35 H 1.09003 * 109.47377 * 59.99482 * 9 8 6 36 36 H 1.09005 * 109.46795 * 59.99574 * 12 10 9 37 37 H 1.08995 * 109.47591 * 180.02562 * 12 10 9 38 38 H 1.09000 * 109.47215 * 300.00212 * 12 10 9 39 39 H 1.00901 * 111.00026 * 81.05101 * 13 10 9 40 40 H 1.09000 * 109.46925 * 299.99997 * 14 13 10 41 41 H 1.08997 * 109.47200 * 60.00194 * 14 13 10 42 42 H 0.97003 * 120.00349 * 0.02562 * 17 15 14 43 43 H 0.96999 * 120.00413 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.47110 * 95.47397 * 27 26 2 45 45 H 1.08997 * 109.46907 * 215.46889 * 27 26 2 46 46 H 1.08999 * 109.47229 * 335.47464 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2947 1.1020 0.0000 4 6 3.6269 0.6769 0.0062 5 6 3.6123 -0.7017 0.0105 6 6 4.7860 -1.5812 0.0170 7 8 4.6431 -2.7860 0.1119 8 7 6.0229 -1.0551 -0.0819 9 6 7.1878 -1.9371 -0.1876 10 6 8.4597 -1.0925 -0.2872 11 1 8.4450 -0.5217 -1.2157 12 6 9.6838 -2.0102 -0.2720 13 7 8.5252 -0.1697 0.8538 14 6 9.3363 1.0115 0.5297 15 6 9.3809 1.9326 1.7216 16 8 8.7945 1.6347 2.7405 17 7 10.0726 3.0874 1.6552 18 6 10.1128 3.9257 2.7392 19 1 9.5906 3.6604 3.6466 20 6 10.8254 5.1166 2.6706 21 7 11.4605 5.4396 1.5664 22 14 10.8809 6.2584 4.1480 23 1 10.0898 5.6698 5.2584 24 1 12.2894 6.4367 4.5832 25 1 10.3068 7.5766 3.7765 26 7 2.2954 -1.1024 0.0060 27 6 1.8243 -2.4896 0.0080 28 1 -0.3633 -0.0006 -1.0276 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3634 0.8902 0.5135 31 1 1.9543 2.1269 -0.0041 32 1 4.5023 1.3094 0.0074 33 1 6.1418 -0.0925 -0.0833 34 1 7.2425 -2.5741 0.6952 35 1 7.0937 -2.5581 -1.0785 36 1 9.6351 -2.6950 -1.1187 37 1 10.5899 -1.4085 -0.3425 38 1 9.6985 -2.5809 0.6565 39 1 8.8781 -0.6359 1.6762 40 1 10.3487 0.6982 0.2749 41 1 8.8937 1.5347 -0.3179 42 1 10.5413 3.3259 0.8401 43 1 11.9583 6.2707 1.5185 44 1 1.8041 -2.8680 -1.0140 45 1 2.4977 -3.1011 0.6086 46 1 0.8205 -2.5319 0.4309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690552956.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:42 Heat of formation + Delta-G solvation = -30.334133 kcal Electronic energy + Delta-G solvation = -26701.125749 eV Core-core repulsion = 22819.301431 eV Total energy + Delta-G solvation = -3881.824318 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.49080 -39.20712 -38.36068 -36.86380 -34.24759 -33.82593 -32.81627 -31.90879 -31.28387 -30.65399 -27.61759 -26.57311 -26.38015 -25.36591 -23.90833 -21.98777 -21.03362 -20.23391 -19.35043 -19.11650 -17.94943 -17.68135 -16.22983 -15.99951 -15.91441 -15.59274 -15.17907 -14.99128 -14.56843 -14.34638 -14.19716 -13.84804 -13.57256 -13.40689 -13.37031 -13.18028 -13.03727 -12.91353 -12.60207 -12.54067 -12.19061 -12.11224 -12.02788 -11.89820 -11.70225 -11.58401 -11.41347 -11.07062 -10.99192 -10.34705 -10.23148 -9.94197 -9.52866 -9.00340 -8.77586 -8.50822 -8.12106 -8.07103 -7.97110 -6.42811 -3.83496 1.45821 2.56466 2.65630 3.15962 3.26828 3.34111 3.42259 3.46151 3.89301 4.05542 4.29208 4.62922 4.65443 4.77269 4.80949 4.92475 5.01802 5.06524 5.11666 5.20356 5.26205 5.26784 5.38435 5.43220 5.48109 5.50950 5.61740 5.62364 5.68580 5.74229 5.88175 5.98986 6.03504 6.08130 6.16158 6.24988 6.50282 6.77625 6.95753 7.13411 7.14217 7.54751 7.58289 7.65909 8.05518 8.28586 8.59992 9.17263 9.53244 10.04494 10.74966 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012249 B = 0.002723 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.343608 B =10281.913332 C =12121.028914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.036 3.964 3 C -0.205 4.205 4 C -0.131 4.131 5 C -0.053 4.053 6 C 0.588 3.412 7 O -0.564 6.564 8 N -0.699 5.699 9 C 0.138 3.862 10 C 0.068 3.932 11 H 0.085 0.915 12 C -0.180 4.180 13 N -0.664 5.664 14 C 0.049 3.951 15 C 0.440 3.560 16 O -0.582 6.582 17 N -0.564 5.564 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 N -0.410 5.410 27 C 0.068 3.932 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.413 0.587 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.354 0.646 40 H 0.045 0.955 41 H 0.086 0.914 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.073 0.927 45 H 0.100 0.900 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.655 -12.821 -9.073 21.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.229 4.229 4 C -0.157 4.157 5 C -0.166 4.166 6 C 0.376 3.624 7 O -0.445 6.445 8 N -0.349 5.349 9 C 0.013 3.987 10 C -0.043 4.043 11 H 0.103 0.897 12 C -0.240 4.240 13 N -0.296 5.296 14 C -0.083 4.083 15 C 0.225 3.775 16 O -0.466 6.466 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 N -0.084 5.084 27 C -0.073 4.073 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.160 0.840 32 H 0.165 0.835 33 H 0.249 0.751 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.174 0.826 40 H 0.063 0.937 41 H 0.104 0.896 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.119 0.881 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.703 -13.780 -8.510 22.559 hybrid contribution 1.462 0.939 0.179 1.747 sum -14.241 -12.841 -8.331 20.907 Atomic orbital electron populations 1.20372 0.87915 1.03347 1.02696 1.20535 0.93669 0.85926 1.07955 1.20639 0.92525 0.97768 1.11966 1.21444 0.98090 0.92047 1.04153 1.19993 0.84188 0.93606 1.18806 1.16947 0.82483 0.86614 0.76310 1.90743 1.86603 1.15083 1.52119 1.45428 1.04538 1.11521 1.73460 1.21334 0.83446 0.92111 1.01808 1.21858 0.93378 0.93520 0.95576 0.89690 1.22431 0.98466 1.00378 1.02716 1.60176 1.56417 1.07672 1.05364 1.21726 0.96014 0.92229 0.98353 1.19802 0.84407 0.83864 0.89415 1.90540 1.48219 1.75326 1.32469 1.41870 1.45058 1.17470 1.15654 1.19746 1.29695 0.99153 0.94157 0.87880 1.25258 0.96501 0.97992 0.98205 1.69617 1.33169 1.25042 1.26516 0.85810 0.77956 0.79621 0.81036 1.19196 1.20797 1.20725 1.43696 1.04665 1.06410 1.53622 1.22187 1.01256 0.79940 1.03928 0.90877 0.91761 0.89852 0.84035 0.83501 0.75065 0.91376 0.91377 0.91854 0.91878 0.91962 0.82619 0.93705 0.89581 0.77495 0.91929 0.90861 0.88110 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.07 36.01 0.36 -0.23 16 2 C 0.04 0.39 6.87 -81.95 -0.56 -0.17 16 3 C -0.21 -2.43 10.71 -39.98 -0.43 -2.86 16 4 C -0.13 -1.73 10.35 -39.12 -0.41 -2.13 16 5 C -0.05 -0.74 6.89 -81.98 -0.56 -1.31 16 6 C 0.59 8.72 7.77 -12.85 -0.10 8.62 16 7 O -0.56 -9.42 14.78 5.19 0.08 -9.34 16 8 N -0.70 -9.18 5.37 -61.62 -0.33 -9.51 16 9 C 0.14 1.61 5.38 -4.05 -0.02 1.59 16 10 C 0.07 0.74 2.75 -67.71 -0.19 0.56 16 11 H 0.08 0.87 7.80 -51.93 -0.40 0.47 16 12 C -0.18 -1.72 9.16 37.16 0.34 -1.38 16 13 N -0.66 -9.68 5.31 -107.99 -0.57 -10.26 16 14 C 0.05 0.80 5.97 -4.97 -0.03 0.77 16 15 C 0.44 9.97 7.82 -10.99 -0.09 9.89 16 16 O -0.58 -15.38 15.78 5.55 0.09 -15.30 16 17 N -0.56 -13.92 5.29 -10.97 -0.06 -13.98 16 18 C -0.30 -8.20 9.68 -14.94 -0.14 -8.34 16 19 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 22 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 N -0.41 -5.03 3.16 -115.62 -0.37 -5.40 16 27 C 0.07 0.66 10.33 59.85 0.62 1.27 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.38 6.91 -51.93 -0.36 0.02 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.15 1.79 7.45 -52.49 -0.39 1.40 16 33 H 0.41 5.34 7.04 -40.82 -0.29 5.05 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.62 7.45 -51.93 -0.39 0.24 16 38 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 39 H 0.35 5.59 8.17 -39.29 -0.32 5.27 16 40 H 0.04 0.66 7.44 -51.93 -0.39 0.27 16 41 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 42 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 43 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.10 1.14 6.53 -51.93 -0.34 0.80 16 46 H 0.08 0.54 6.80 -51.93 -0.35 0.19 16 LS Contribution 384.91 15.07 5.80 5.80 Total: -1.00 -33.45 384.91 -7.83 -41.28 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: -6.86 Total: 17.60 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -1.30 Total: 6.76 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -0.60 Total: -62.69 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: 0.16 Total: -24.64 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.45 -7.83 -41.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690552956.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.943 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds