Wall clock time and date at job start Fri Apr 10 2020 18:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 119.99886 * 2 1 4 4 H 1.48503 * 109.47626 * 270.00341 * 3 2 1 5 5 H 1.48498 * 109.47055 * 30.00275 * 3 2 1 6 6 H 1.48503 * 109.47207 * 150.00178 * 3 2 1 7 7 C 1.38809 * 120.00410 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00431 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99812 * 359.97438 * 7 2 1 10 10 C 1.47866 * 126.94381 * 0.02562 * 9 7 2 11 11 C 1.56014 * 105.10361 * 181.98364 * 10 9 7 12 12 H 1.09003 * 116.25055 * 159.68093 * 11 10 9 13 13 C 1.57083 * 99.61069 * 32.80751 * 11 10 9 14 14 C 1.49295 * 126.94561 * 180.02562 * 9 7 2 15 15 H 1.09001 * 116.14938 * 16.72037 * 14 9 7 16 16 C 1.56000 * 104.29489 * 246.64141 * 14 9 7 17 17 N 1.47861 * 105.11277 * 289.08069 * 16 14 9 18 18 C 1.34780 * 126.94411 * 181.90784 * 17 16 14 19 19 O 1.21280 * 120.00423 * 179.68414 * 18 17 16 20 20 C 1.50701 * 119.99795 * 359.69090 * 18 17 16 21 21 N 1.46499 * 109.46992 * 179.97438 * 20 18 17 22 22 C 1.34779 * 119.99872 * 179.97438 * 21 20 18 23 23 O 1.21590 * 120.00297 * 0.02562 * 22 21 20 24 24 N 1.34783 * 119.99768 * 180.02562 * 22 21 20 25 25 C 1.47021 * 125.65051 * 359.69426 * 24 22 21 26 26 C 1.54311 * 107.27317 * 180.96765 * 25 24 22 27 27 C 1.55151 * 102.86729 * 22.52642 * 26 25 24 28 28 C 1.47423 * 125.64261 * 179.97438 * 24 22 21 29 29 H 0.96999 * 120.00522 * 0.02562 * 1 2 3 30 30 H 1.08995 * 110.31546 * 63.07591 * 10 9 7 31 31 H 1.08999 * 110.31578 * 300.89027 * 10 9 7 32 32 H 1.09001 * 112.36573 * 64.26764 * 13 11 10 33 33 H 1.08996 * 112.36921 * 191.71606 * 13 11 10 34 34 H 1.09000 * 110.40604 * 170.12412 * 16 14 9 35 35 H 1.08998 * 110.21368 * 47.94711 * 16 14 9 36 36 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 37 37 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 38 38 H 0.97000 * 120.00420 * 0.02562 * 21 20 18 39 39 H 1.08993 * 109.88119 * 300.51438 * 25 24 22 40 40 H 1.09000 * 109.88086 * 61.67552 * 25 24 22 41 41 H 1.09006 * 110.92348 * 264.10689 * 26 25 24 42 42 H 1.09002 * 110.58958 * 140.78617 * 26 25 24 43 43 H 1.08998 * 111.00378 * 206.22954 * 27 26 25 44 44 H 1.09002 * 111.00398 * 82.37381 * 27 26 25 45 45 H 1.08998 * 110.37140 * 274.67070 * 28 24 22 46 46 H 1.09001 * 110.37146 * 36.89266 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1422 -2.5669 -0.0005 11 6 -0.3637 -4.1103 0.0516 12 1 -1.3410 -4.4457 0.3987 13 6 0.8841 -4.5255 0.9108 14 6 1.9103 -3.7618 -0.0005 15 1 2.9607 -3.8368 0.2810 16 6 1.5097 -4.3509 -1.3883 17 7 0.0520 -4.5834 -1.3022 18 6 -0.7404 -5.1193 -2.2517 19 8 -1.9271 -5.2582 -2.0438 20 6 -0.1516 -5.5460 -3.5717 21 7 -1.2099 -6.0932 -4.4242 22 6 -0.9150 -6.5409 -5.6608 23 8 0.2294 -6.4910 -6.0687 24 7 -1.8887 -7.0439 -6.4454 25 6 -3.3067 -7.1686 -6.0776 26 6 -4.0349 -7.8172 -7.2736 27 6 -2.8881 -8.5460 -8.0224 28 6 -1.7071 -7.5653 -7.8123 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5738 -2.1532 -0.9119 31 1 -0.5813 -2.0917 0.8767 32 1 0.8453 -4.1196 1.9216 33 1 1.0493 -5.6028 0.9088 34 1 2.0327 -5.2902 -1.5678 35 1 1.7328 -3.6355 -2.1798 36 1 0.3020 -4.6850 -4.0625 37 1 0.6080 -6.3089 -3.4011 38 1 -2.1229 -6.1327 -4.0991 39 1 -3.4064 -7.7992 -5.1943 40 1 -3.7268 -6.1823 -5.8808 41 1 -4.4901 -7.0584 -7.9102 42 1 -4.7828 -8.5300 -6.9263 43 1 -3.1208 -8.6558 -9.0816 44 1 -2.6779 -9.5142 -7.5678 45 1 -1.7546 -6.7532 -8.5377 46 1 -0.7560 -8.0913 -7.8945 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692364646.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:03 Heat of formation + Delta-G solvation = 4.557000 kcal Electronic energy + Delta-G solvation = -27665.010644 eV Core-core repulsion = 23784.699319 eV Total energy + Delta-G solvation = -3880.311325 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.51526 -39.99789 -38.23586 -37.45316 -34.36010 -33.70898 -31.96647 -31.54216 -29.46002 -29.16517 -28.64032 -27.20113 -25.23917 -23.83822 -23.23124 -21.52591 -20.70728 -20.09560 -19.89292 -18.84166 -18.24361 -17.00312 -16.87283 -16.37074 -15.91868 -15.84859 -15.43473 -14.96527 -14.63461 -14.14482 -13.91873 -13.81908 -13.61917 -13.42513 -13.18620 -12.96177 -12.72983 -12.26173 -12.22287 -11.93021 -11.71194 -11.69078 -11.55625 -11.36193 -11.11880 -11.07352 -10.89525 -10.82488 -10.64788 -10.30553 -10.28473 -10.10565 -9.69396 -9.63904 -9.24138 -8.74352 -8.68962 -8.12209 -6.96995 -5.80003 -3.14747 2.37753 2.83973 3.13122 3.27495 3.36192 3.41022 3.43324 3.89953 4.24024 4.32939 4.39462 4.55880 4.63859 4.93062 5.04525 5.05829 5.13392 5.27784 5.28659 5.37066 5.41235 5.48831 5.49802 5.52184 5.53959 5.59179 5.63034 5.71334 5.79754 5.89223 6.02438 6.10522 6.21074 6.32141 6.34356 6.44186 6.54658 6.62345 6.91995 7.38036 7.42846 7.68095 7.85715 7.94764 8.06482 8.36148 8.51336 9.06947 9.67914 10.36145 11.32169 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019933 B = 0.002662 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.349438 B =10516.461561 C =10895.356223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.232 4.232 8 H 0.082 0.918 9 N -0.597 5.597 10 C 0.174 3.826 11 C 0.098 3.902 12 H 0.115 0.885 13 C -0.151 4.151 14 C 0.142 3.858 15 H 0.109 0.891 16 C 0.079 3.921 17 N -0.600 5.600 18 C 0.524 3.476 19 O -0.557 6.557 20 C 0.125 3.875 21 N -0.730 5.730 22 C 0.725 3.275 23 O -0.591 6.591 24 N -0.638 5.638 25 C 0.096 3.904 26 C -0.129 4.129 27 C -0.134 4.134 28 C 0.125 3.875 29 H 0.254 0.746 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.407 0.593 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.326 -17.143 -10.221 20.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.360 4.360 8 H 0.099 0.901 9 N -0.321 5.321 10 C 0.049 3.951 11 C -0.004 4.004 12 H 0.133 0.867 13 C -0.191 4.191 14 C 0.033 3.967 15 H 0.126 0.874 16 C -0.047 4.047 17 N -0.333 5.333 18 C 0.311 3.689 19 O -0.437 6.437 20 C -0.003 4.003 21 N -0.388 5.388 22 C 0.427 3.573 23 O -0.469 6.469 24 N -0.378 5.378 25 C -0.027 4.027 26 C -0.167 4.167 27 C -0.173 4.173 28 C 0.001 3.999 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.245 0.755 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.131 -16.848 -10.397 20.452 hybrid contribution -0.066 1.028 0.069 1.032 sum -5.197 -15.820 -10.328 19.595 Atomic orbital electron populations 1.69906 1.04966 1.25370 1.56373 1.24824 0.95700 0.97776 1.01956 0.86106 0.78567 0.83373 0.77595 1.21582 1.21688 1.20602 1.19052 0.90442 0.82018 1.44504 0.90066 1.45250 1.01310 0.99325 1.86260 1.21935 0.84783 0.87013 1.01404 1.24406 0.97878 0.97809 0.80278 0.86742 1.24165 0.96635 0.98996 0.99299 1.23165 0.96705 0.86238 0.90631 0.87359 1.23390 0.79404 0.99367 1.02498 1.49134 1.09650 1.59116 1.15368 1.19941 0.86268 0.77751 0.84907 1.90639 1.15298 1.57396 1.80359 1.20855 0.90088 1.00507 0.88816 1.44760 1.12834 1.66979 1.14251 1.15284 0.83683 0.78222 0.80131 1.90932 1.18697 1.63022 1.74271 1.47518 1.07496 1.66368 1.16390 1.22038 0.81189 1.01088 0.98430 1.22605 0.97634 1.00032 0.96470 1.22814 0.94618 0.98549 1.01279 1.22073 0.99329 0.96305 0.82148 0.93562 0.93451 0.92493 0.89644 0.91556 0.92322 0.90666 0.88546 0.88830 0.75536 0.91417 0.91330 0.90353 0.89904 0.89667 0.90531 0.91628 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.53 10.56 55.49 0.59 -25.94 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.23 -6.09 10.38 -15.06 -0.16 -6.25 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -14.04 3.03 -156.37 -0.47 -14.51 16 10 C 0.17 4.07 4.77 -1.68 -0.01 4.06 16 11 C 0.10 1.84 5.24 -62.54 -0.33 1.51 16 12 H 0.11 2.06 8.05 -51.93 -0.42 1.65 16 13 C -0.15 -2.46 6.80 -22.31 -0.15 -2.61 16 14 C 0.14 2.53 5.52 -62.57 -0.35 2.19 16 15 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 16 C 0.08 1.29 6.01 -1.69 -0.01 1.28 16 17 N -0.60 -10.62 2.95 -156.79 -0.46 -11.08 16 18 C 0.52 9.13 7.96 -10.98 -0.09 9.05 16 19 O -0.56 -10.90 16.01 5.56 0.09 -10.81 16 20 C 0.13 1.89 5.44 -5.19 -0.03 1.86 16 21 N -0.73 -10.61 5.49 -66.41 -0.36 -10.97 16 22 C 0.73 10.96 8.49 -86.91 -0.74 10.23 16 23 O -0.59 -10.89 16.60 5.29 0.09 -10.80 16 24 N -0.64 -7.42 3.33 -176.23 -0.59 -8.01 16 25 C 0.10 0.82 6.14 -3.07 -0.02 0.80 16 26 C -0.13 -0.75 6.95 -24.91 -0.17 -0.93 16 27 C -0.13 -0.80 7.08 -24.57 -0.17 -0.98 16 28 C 0.12 1.15 6.91 -2.52 -0.02 1.13 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.05 1.29 7.68 -51.93 -0.40 0.89 16 31 H 0.06 1.47 7.46 -51.93 -0.39 1.09 16 32 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.41 5.66 6.42 -40.82 -0.26 5.40 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.08 0.80 8.03 -51.93 -0.42 0.38 16 LS Contribution 369.79 15.07 5.57 5.57 Total: -1.00 -33.40 369.79 -10.25 -43.65 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -7.35 Total: 5.22 kcal Atomic # 6 Polarization: 23.43 SS G_CDS: -2.33 Total: 21.10 kcal Atomic # 7 Polarization: -69.21 SS G_CDS: -1.30 Total: -70.52 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: 0.18 Total: -21.61 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.40 -10.25 -43.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692364646.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.212 kcal (2) G-P(sol) polarization free energy of solvation -33.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds