Wall clock time and date at job start Fri Apr 10 2020 18:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 119.99886 * 2 1 4 4 H 1.48503 * 109.47626 * 270.00341 * 3 2 1 5 5 H 1.48498 * 109.47055 * 30.00275 * 3 2 1 6 6 H 1.48503 * 109.47207 * 150.00178 * 3 2 1 7 7 C 1.38809 * 120.00410 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00431 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99812 * 359.97438 * 7 2 1 10 10 C 1.47866 * 126.94381 * 0.02562 * 9 7 2 11 11 C 1.56014 * 105.10361 * 181.98364 * 10 9 7 12 12 H 1.09003 * 116.25055 * 159.68093 * 11 10 9 13 13 C 1.57083 * 99.61069 * 32.80751 * 11 10 9 14 14 C 1.49295 * 126.94561 * 180.02562 * 9 7 2 15 15 H 1.09001 * 116.14938 * 16.72037 * 14 9 7 16 16 C 1.56000 * 104.29489 * 246.64141 * 14 9 7 17 17 N 1.47861 * 105.11277 * 289.08069 * 16 14 9 18 18 C 1.34780 * 126.94411 * 181.90784 * 17 16 14 19 19 O 1.21280 * 120.00423 * 179.68414 * 18 17 16 20 20 C 1.50701 * 119.99795 * 359.69090 * 18 17 16 21 21 N 1.46499 * 109.46992 * 179.97438 * 20 18 17 22 22 C 1.34779 * 119.99872 * 179.97438 * 21 20 18 23 23 O 1.21590 * 120.00297 * 0.02562 * 22 21 20 24 24 N 1.34783 * 119.99768 * 180.02562 * 22 21 20 25 25 C 1.47021 * 125.65051 * 359.69426 * 24 22 21 26 26 C 1.54311 * 107.27317 * 180.96765 * 25 24 22 27 27 C 1.55151 * 102.86729 * 22.52642 * 26 25 24 28 28 C 1.47423 * 125.64261 * 179.97438 * 24 22 21 29 29 H 0.96999 * 120.00522 * 0.02562 * 1 2 3 30 30 H 1.08995 * 110.31546 * 63.07591 * 10 9 7 31 31 H 1.08999 * 110.31578 * 300.89027 * 10 9 7 32 32 H 1.09001 * 112.36573 * 64.26764 * 13 11 10 33 33 H 1.08996 * 112.36921 * 191.71606 * 13 11 10 34 34 H 1.09000 * 110.40604 * 170.12412 * 16 14 9 35 35 H 1.08998 * 110.21368 * 47.94711 * 16 14 9 36 36 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 37 37 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 38 38 H 0.97000 * 120.00420 * 0.02562 * 21 20 18 39 39 H 1.08993 * 109.88119 * 300.51438 * 25 24 22 40 40 H 1.09000 * 109.88086 * 61.67552 * 25 24 22 41 41 H 1.09006 * 110.92348 * 264.10689 * 26 25 24 42 42 H 1.09002 * 110.58958 * 140.78617 * 26 25 24 43 43 H 1.08998 * 111.00378 * 206.22954 * 27 26 25 44 44 H 1.09002 * 111.00398 * 82.37381 * 27 26 25 45 45 H 1.08998 * 110.37140 * 274.67070 * 28 24 22 46 46 H 1.09001 * 110.37146 * 36.89266 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1422 -2.5669 -0.0005 11 6 -0.3637 -4.1103 0.0516 12 1 -1.3410 -4.4457 0.3987 13 6 0.8841 -4.5255 0.9108 14 6 1.9103 -3.7618 -0.0005 15 1 2.9607 -3.8368 0.2810 16 6 1.5097 -4.3509 -1.3883 17 7 0.0520 -4.5834 -1.3022 18 6 -0.7404 -5.1193 -2.2517 19 8 -1.9271 -5.2582 -2.0438 20 6 -0.1516 -5.5460 -3.5717 21 7 -1.2099 -6.0932 -4.4242 22 6 -0.9150 -6.5409 -5.6608 23 8 0.2294 -6.4910 -6.0687 24 7 -1.8887 -7.0439 -6.4454 25 6 -3.3067 -7.1686 -6.0776 26 6 -4.0349 -7.8172 -7.2736 27 6 -2.8881 -8.5460 -8.0224 28 6 -1.7071 -7.5653 -7.8123 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5738 -2.1532 -0.9119 31 1 -0.5813 -2.0917 0.8767 32 1 0.8453 -4.1196 1.9216 33 1 1.0493 -5.6028 0.9088 34 1 2.0327 -5.2902 -1.5678 35 1 1.7328 -3.6355 -2.1798 36 1 0.3020 -4.6850 -4.0625 37 1 0.6080 -6.3089 -3.4011 38 1 -2.1229 -6.1327 -4.0991 39 1 -3.4064 -7.7992 -5.1943 40 1 -3.7268 -6.1823 -5.8808 41 1 -4.4901 -7.0584 -7.9102 42 1 -4.7828 -8.5300 -6.9263 43 1 -3.1208 -8.6558 -9.0816 44 1 -2.6779 -9.5142 -7.5678 45 1 -1.7546 -6.7532 -8.5377 46 1 -0.7560 -8.0913 -7.8945 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692364646.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:03 Heat of formation + Delta-G solvation = -18.317953 kcal Electronic energy + Delta-G solvation = -27666.002577 eV Core-core repulsion = 23784.699319 eV Total energy + Delta-G solvation = -3881.303258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.80526 -41.23727 -39.58600 -38.45726 -35.60818 -35.49811 -33.46172 -32.59905 -30.94596 -30.28597 -29.98538 -28.41367 -26.98082 -25.25166 -24.37415 -22.33512 -21.97940 -21.46707 -21.14521 -20.19476 -19.52096 -18.62046 -17.91883 -17.66613 -17.35097 -17.16334 -16.66615 -16.43242 -15.87043 -15.73099 -15.38742 -14.97563 -14.57845 -14.51394 -14.22531 -13.99475 -13.83699 -13.76259 -13.51150 -13.33322 -13.23104 -13.10036 -12.84979 -12.71327 -12.33685 -12.21897 -12.15895 -12.13993 -12.05488 -11.88030 -11.60141 -11.53389 -11.50350 -11.13514 -10.73759 -10.44552 -9.63981 -9.58766 -8.91449 -7.85196 -5.20439 1.29375 1.44526 1.46680 1.47766 1.56229 1.96301 1.99313 2.48190 2.91125 3.27292 3.33261 3.47468 3.66812 3.70383 3.77239 3.87576 4.01368 4.06368 4.20845 4.22653 4.25318 4.29404 4.47763 4.58806 4.61981 4.67393 4.77968 4.85212 4.91682 4.93167 4.98640 5.02762 5.11106 5.13699 5.16205 5.23222 5.26126 5.35556 5.45038 5.51582 5.65760 5.91507 6.10110 6.52700 6.78962 6.95098 7.03261 7.37125 7.70952 8.40802 9.25928 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019933 B = 0.002662 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.349438 B =10516.461561 C =10895.356223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.072 4.072 3 Si 0.975 3.025 4 H -0.292 1.292 5 H -0.301 1.301 6 H -0.262 1.262 7 C -0.229 4.229 8 H 0.096 0.904 9 N -0.618 5.618 10 C 0.185 3.815 11 C 0.104 3.896 12 H 0.120 0.880 13 C -0.128 4.128 14 C 0.135 3.865 15 H 0.137 0.863 16 C 0.085 3.915 17 N -0.603 5.603 18 C 0.524 3.476 19 O -0.581 6.581 20 C 0.135 3.865 21 N -0.728 5.728 22 C 0.718 3.282 23 O -0.630 6.630 24 N -0.639 5.639 25 C 0.087 3.913 26 C -0.121 4.121 27 C -0.122 4.122 28 C 0.114 3.886 29 H 0.243 0.757 30 H -0.004 1.004 31 H 0.020 0.980 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.410 0.590 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.535 -19.726 -10.726 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.264 4.264 3 Si 0.805 3.195 4 H -0.220 1.220 5 H -0.228 1.228 6 H -0.186 1.186 7 C -0.357 4.357 8 H 0.113 0.887 9 N -0.342 5.342 10 C 0.059 3.941 11 C 0.001 3.999 12 H 0.137 0.863 13 C -0.167 4.167 14 C 0.029 3.971 15 H 0.154 0.846 16 C -0.039 4.039 17 N -0.335 5.335 18 C 0.313 3.687 19 O -0.462 6.462 20 C 0.007 3.993 21 N -0.387 5.387 22 C 0.420 3.580 23 O -0.512 6.512 24 N -0.377 5.377 25 C -0.035 4.035 26 C -0.159 4.159 27 C -0.160 4.160 28 C -0.009 4.009 29 H 0.053 0.947 30 H 0.014 0.986 31 H 0.038 0.962 32 H 0.101 0.899 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.131 0.869 38 H 0.248 0.752 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.122 0.878 43 H 0.127 0.873 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.328 -19.492 -10.915 22.755 hybrid contribution -0.326 1.786 0.191 1.826 sum -4.654 -17.705 -10.724 21.217 Atomic orbital electron populations 1.70144 1.06526 1.25102 1.58839 1.25643 0.96420 1.01137 1.03248 0.85110 0.77894 0.79408 0.77127 1.21975 1.22824 1.18636 1.19536 0.91285 0.83140 1.41780 0.88673 1.45512 1.01538 1.01105 1.86076 1.21547 0.84949 0.90301 0.97261 1.24240 0.99655 0.94072 0.81907 0.86252 1.24065 0.93545 1.00977 0.98108 1.23598 0.98454 0.83185 0.91901 0.84552 1.23321 0.78852 1.01053 1.00718 1.49174 1.10361 1.58917 1.15076 1.20293 0.85886 0.77202 0.85326 1.90625 1.16373 1.58391 1.80825 1.20756 0.90407 1.00763 0.87356 1.44714 1.12812 1.66886 1.14241 1.15473 0.83856 0.78356 0.80314 1.90891 1.20485 1.64750 1.75047 1.47688 1.08175 1.65014 1.16777 1.22290 0.79654 1.01451 1.00131 1.22629 0.97580 1.00448 0.95216 1.22800 0.92802 0.97554 1.02844 1.22318 1.00416 0.97125 0.80993 0.94748 0.98566 0.96184 0.89921 0.87619 0.87605 0.92749 0.89315 0.86938 0.75188 0.90963 0.91658 0.89489 0.87839 0.87288 0.90193 0.91448 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.03 10.56 21.65 0.23 -57.81 16 2 C -0.07 -4.03 5.49 84.86 0.47 -3.56 16 3 Si 0.98 45.33 29.55 68.60 2.03 47.36 16 4 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 5 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.23 -12.01 10.38 84.03 0.87 -11.14 16 8 H 0.10 4.62 7.83 -2.91 -0.02 4.60 16 9 N -0.62 -29.10 3.03 -648.63 -1.96 -31.06 16 10 C 0.19 9.04 4.77 87.16 0.42 9.45 16 11 C 0.10 3.82 5.24 46.93 0.25 4.07 16 12 H 0.12 4.27 8.05 -2.39 -0.02 4.25 16 13 C -0.13 -3.77 6.80 33.46 0.23 -3.54 16 14 C 0.13 4.48 5.52 46.91 0.26 4.74 16 15 H 0.14 3.79 8.14 -2.39 -0.02 3.77 16 16 C 0.08 2.58 6.01 87.16 0.52 3.10 16 17 N -0.60 -20.61 2.95 -768.34 -2.26 -22.88 16 18 C 0.52 17.88 7.96 87.66 0.70 18.58 16 19 O -0.58 -22.59 16.01 -3.03 -0.05 -22.63 16 20 C 0.14 3.97 5.44 85.63 0.47 4.43 16 21 N -0.73 -20.86 5.49 -482.28 -2.65 -23.50 16 22 C 0.72 21.57 8.49 179.05 1.52 23.09 16 23 O -0.63 -23.30 16.60 -4.00 -0.07 -23.37 16 24 N -0.64 -14.39 3.33 -829.73 -2.76 -17.15 16 25 C 0.09 1.36 6.14 86.72 0.53 1.90 16 26 C -0.12 -1.07 6.95 31.78 0.22 -0.85 16 27 C -0.12 -1.14 7.08 31.99 0.23 -0.91 16 28 C 0.11 1.99 6.91 86.87 0.60 2.59 16 29 H 0.24 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.00 -0.22 7.68 -2.39 -0.02 -0.24 16 31 H 0.02 1.10 7.46 -2.39 -0.02 1.09 16 32 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 38 H 0.41 11.25 6.42 -92.71 -0.60 10.66 16 39 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 42 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 46 H 0.07 1.31 8.03 -2.39 -0.02 1.29 16 Total: -1.00 -76.74 369.79 0.17 -76.58 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.39 Total: 22.52 kcal Atomic # 6 Polarization: 44.67 SS G_CDS: 7.27 Total: 51.95 kcal Atomic # 7 Polarization: -143.00 SS G_CDS: -9.41 Total: -152.40 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -0.11 Total: -46.00 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -76.74 0.17 -76.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692364646.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.258 kcal (2) G-P(sol) polarization free energy of solvation -76.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds