Wall clock time and date at job start Fri Apr 10 2020 18:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30786 * 125.72498 * 2 1 4 4 C 1.34425 * 109.31706 * 180.02562 * 3 2 1 5 5 C 1.33857 * 107.80132 * 0.02562 * 4 3 2 6 6 N 1.34402 * 125.71877 * 179.97438 * 2 1 3 7 7 C 1.46476 * 128.44532 * 359.87302 * 6 2 1 8 8 C 1.53285 * 108.69476 * 197.27778 * 7 6 2 9 9 H 1.09000 * 109.42958 * 69.29145 * 8 7 6 10 10 C 1.50703 * 109.42833 * 189.18557 * 8 7 6 11 11 O 1.21279 * 119.99926 * 0.02562 * 10 8 7 12 12 N 1.34775 * 119.99773 * 180.02562 * 10 8 7 13 13 C 1.46504 * 119.99531 * 179.97438 * 12 10 8 14 14 C 1.53006 * 109.46883 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.47395 * 305.00649 * 14 13 12 16 16 O 1.42897 * 109.46881 * 65.00211 * 14 13 12 17 17 C 1.52999 * 109.47054 * 185.00191 * 14 13 12 18 18 N 1.46496 * 109.46662 * 180.02562 * 17 14 13 19 19 C 1.36945 * 119.99808 * 180.02562 * 18 17 14 20 20 H 1.08004 * 119.99751 * 359.97438 * 19 18 17 21 21 C 1.38815 * 120.00304 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99520 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00035 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47269 * 59.99634 * 23 21 19 25 25 H 1.48504 * 109.47054 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47171 * 299.99516 * 23 21 19 27 27 C 1.53110 * 109.71616 * 309.26094 * 8 7 6 28 28 C 1.50710 * 128.68125 * 179.85593 * 5 4 3 29 29 H 1.09005 * 109.47185 * 270.00640 * 1 2 3 30 30 H 1.09002 * 109.47020 * 29.99713 * 1 2 3 31 31 H 1.08995 * 109.47529 * 150.00326 * 1 2 3 32 32 H 1.08005 * 126.09389 * 179.97438 * 4 3 2 33 33 H 1.09003 * 109.59790 * 77.51949 * 7 6 2 34 34 H 1.08998 * 109.72762 * 317.12312 * 7 6 2 35 35 H 0.96992 * 120.00503 * 359.97438 * 12 10 8 36 36 H 1.09001 * 109.46891 * 60.00097 * 13 12 10 37 37 H 1.08993 * 109.47378 * 299.99469 * 13 12 10 38 38 H 0.96702 * 114.00429 * 59.99915 * 16 14 13 39 39 H 1.09001 * 109.47018 * 300.00144 * 17 14 13 40 40 H 1.08995 * 109.47070 * 60.00530 * 17 14 13 41 41 H 0.96998 * 120.01051 * 0.02562 * 18 17 14 42 42 H 0.97001 * 119.99215 * 180.02562 * 22 21 19 43 43 H 1.09003 * 109.49503 * 189.85678 * 27 8 7 44 44 H 1.08997 * 109.49914 * 309.95429 * 27 8 7 45 45 H 1.09000 * 109.74044 * 315.48004 * 28 5 4 46 46 H 1.08995 * 109.74474 * 76.14330 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2707 1.0618 0.0000 4 6 3.5602 0.6820 -0.0006 5 6 3.5927 -0.6561 -0.0015 6 7 2.2917 -1.0912 0.0005 7 6 1.8920 -2.5004 0.0037 8 6 3.0925 -3.3506 0.4342 9 1 3.3045 -3.1713 1.4883 10 6 2.7736 -4.8090 0.2282 11 8 1.6947 -5.1366 -0.2187 12 7 3.6872 -5.7493 0.5405 13 6 3.3769 -7.1671 0.3407 14 6 4.5747 -8.0167 0.7700 15 1 5.4649 -7.6869 0.2344 16 8 4.7833 -7.8699 2.1761 17 6 4.2998 -9.4865 0.4460 18 7 5.4464 -10.3000 0.8577 19 6 5.4284 -11.6558 0.6654 20 1 4.5686 -12.1252 0.2106 21 6 6.5146 -12.4268 1.0559 22 7 7.5622 -11.8546 1.6107 23 14 6.4896 -14.2762 0.7942 24 1 6.3439 -14.5692 -0.6542 25 1 7.7592 -14.8638 1.2925 26 1 5.3462 -14.8656 1.5360 27 6 4.3185 -2.9742 -0.4021 28 6 4.7918 -1.5692 -0.0054 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5137 32 1 4.4171 1.3395 -0.0011 33 1 1.5769 -2.7933 -0.9979 34 1 1.0695 -2.6479 0.7035 35 1 4.5502 -5.4874 0.8975 36 1 3.1631 -7.3472 -0.7129 37 1 2.5068 -7.4364 0.9392 38 1 4.0299 -8.1451 2.7163 39 1 3.4096 -9.8163 0.9817 40 1 4.1408 -9.5985 -0.6265 41 1 6.2185 -9.8785 1.2665 42 1 8.3214 -12.3934 1.8832 43 1 5.1179 -3.6925 -0.2195 44 1 4.0545 -2.9840 -1.4596 45 1 5.5259 -1.2098 -0.7265 46 1 5.2363 -1.5974 0.9894 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699058681.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:07 Heat of formation + Delta-G solvation = -26.643418 kcal Electronic energy + Delta-G solvation = -26666.057244 eV Core-core repulsion = 22784.392968 eV Total energy + Delta-G solvation = -3881.664277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.72051 -40.29372 -37.88643 -36.61985 -34.66760 -34.09829 -33.66195 -31.76558 -31.29906 -30.37409 -29.10150 -26.76186 -25.94716 -24.50306 -22.98948 -22.50132 -21.55677 -21.27597 -20.29397 -19.34074 -17.79208 -17.21562 -16.97836 -16.58478 -16.16870 -16.05941 -15.47486 -15.23338 -14.86010 -14.54566 -14.40709 -14.16817 -14.03145 -13.86115 -13.67902 -13.34908 -13.26134 -13.06898 -12.75216 -12.72649 -12.43380 -12.34496 -12.20437 -11.97430 -11.62998 -11.47456 -11.01792 -10.85382 -10.73403 -10.28668 -10.22736 -10.20563 -9.88418 -9.80404 -9.58889 -9.32701 -8.96081 -8.47395 -7.00731 -5.81941 -3.12087 1.72939 2.24372 2.30456 2.84603 2.91783 3.40025 3.44479 3.45609 3.80200 4.08078 4.11214 4.19952 4.34457 4.46337 4.56729 4.62237 4.70377 4.74166 4.80102 4.85954 4.97919 5.10739 5.12837 5.14710 5.20777 5.31854 5.34759 5.48018 5.48441 5.50495 5.57194 5.61439 5.65739 5.83134 6.08210 6.09291 6.19285 6.41668 6.48019 6.57427 6.89984 7.18436 7.62158 7.81396 7.82248 7.88526 8.36167 9.47864 10.03619 10.39354 11.40172 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.036180 B = 0.001934 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.732979 B =14477.162812 C =14983.053396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.209 3.791 3 N -0.495 5.495 4 C -0.021 4.021 5 C -0.030 4.030 6 N -0.452 5.452 7 C 0.124 3.876 8 C -0.120 4.120 9 H 0.110 0.890 10 C 0.522 3.478 11 O -0.541 6.541 12 N -0.715 5.715 13 C 0.089 3.911 14 C 0.089 3.911 15 H 0.105 0.895 16 O -0.552 6.552 17 C 0.127 3.873 18 N -0.725 5.725 19 C -0.246 4.246 20 H 0.069 0.931 21 C -0.011 4.011 22 N -0.930 5.930 23 Si 0.909 3.091 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.286 1.286 27 C -0.118 4.118 28 C -0.043 4.043 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.169 0.831 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.406 0.594 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.374 0.626 39 H 0.023 0.977 40 H 0.028 0.972 41 H 0.389 0.611 42 H 0.256 0.744 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.962 23.759 -2.433 25.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.053 4.053 3 N -0.214 5.214 4 C -0.169 4.169 5 C -0.144 4.144 6 N -0.135 5.135 7 C 0.001 3.999 8 C -0.142 4.142 9 H 0.128 0.872 10 C 0.307 3.693 11 O -0.419 6.419 12 N -0.366 5.366 13 C -0.035 4.035 14 C 0.029 3.971 15 H 0.122 0.878 16 O -0.357 6.357 17 C -0.002 4.002 18 N -0.370 5.370 19 C -0.377 4.377 20 H 0.087 0.913 21 C -0.208 4.208 22 N -0.577 5.577 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.156 4.156 28 C -0.081 4.081 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.092 0.908 32 H 0.187 0.813 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.242 0.758 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.221 0.779 39 H 0.040 0.960 40 H 0.046 0.954 41 H 0.224 0.776 42 H 0.066 0.934 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.111 0.889 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.547 24.218 -2.996 26.585 hybrid contribution 0.458 -1.918 0.342 2.001 sum -10.089 22.301 -2.654 24.620 Atomic orbital electron populations 1.20193 0.84922 1.04087 1.03557 1.23130 0.95653 0.81070 1.05465 1.70462 1.02019 1.27999 1.20934 1.21825 0.94840 0.91934 1.08295 1.21136 0.85595 0.95493 1.12175 1.45266 1.06420 1.07099 1.54752 1.21681 0.96999 0.76633 1.04548 1.21566 0.96746 0.92446 1.03420 0.87239 1.20117 0.84376 0.87074 0.77780 1.90736 1.23443 1.82770 1.44934 1.45897 1.18683 1.06561 1.65449 1.22174 0.99135 0.79581 1.02653 1.22391 0.96841 0.95166 0.82689 0.87756 1.86577 1.44708 1.88146 1.16263 1.21185 0.92486 0.88596 0.97937 1.42213 1.16893 1.04119 1.73807 1.19168 1.01192 0.83363 1.34020 0.91260 1.24772 0.96564 0.98153 1.01307 1.69669 1.06815 1.34688 1.46569 0.86245 0.76764 0.85245 0.77762 1.21220 1.21610 1.21223 1.21698 0.96129 0.97497 1.00238 1.20219 0.93064 0.91550 1.03296 0.90159 0.89141 0.90758 0.81345 0.88550 0.88402 0.75823 0.90230 0.90860 0.77869 0.95957 0.95383 0.77635 0.93378 0.89559 0.90515 0.88856 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.24 36.01 0.37 -0.09 16 2 C 0.21 2.13 7.94 -155.76 -1.24 0.89 16 3 N -0.49 -5.99 11.27 -11.02 -0.12 -6.12 16 4 C -0.02 -0.22 11.84 -17.95 -0.21 -0.43 16 5 C -0.03 -0.27 6.57 -81.73 -0.54 -0.81 16 6 N -0.45 -4.18 3.13 -109.42 -0.34 -4.53 16 7 C 0.12 0.99 5.32 -3.91 -0.02 0.97 16 8 C -0.12 -0.87 2.52 -91.57 -0.23 -1.10 16 9 H 0.11 0.71 8.11 -51.93 -0.42 0.28 16 10 C 0.52 5.20 7.15 -10.98 -0.08 5.12 16 11 O -0.54 -7.30 15.84 5.56 0.09 -7.21 16 12 N -0.71 -6.73 5.32 -60.29 -0.32 -7.05 16 13 C 0.09 1.01 5.31 -4.04 -0.02 0.99 16 14 C 0.09 1.23 3.09 -26.73 -0.08 1.15 16 15 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 16 O -0.55 -8.01 13.03 -35.23 -0.46 -8.47 16 17 C 0.13 2.32 5.92 -4.04 -0.02 2.29 16 18 N -0.73 -17.74 5.49 -59.91 -0.33 -18.07 16 19 C -0.25 -6.77 9.99 -15.05 -0.15 -6.92 16 20 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 23 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 C -0.12 -0.72 5.22 -26.43 -0.14 -0.86 16 28 C -0.04 -0.26 6.31 -27.63 -0.17 -0.43 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.40 7.95 -51.93 -0.41 -0.01 16 32 H 0.17 1.34 8.06 -52.48 -0.42 0.91 16 33 H 0.10 0.83 7.81 -51.93 -0.41 0.43 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.41 3.21 7.79 -40.82 -0.32 2.89 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.37 4.52 9.05 45.56 0.41 4.94 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.39 10.21 7.54 -40.82 -0.31 9.90 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.09 0.43 7.30 -51.93 -0.38 0.05 16 44 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16 45 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 380.23 15.07 5.73 5.73 Total: -1.00 -35.19 380.23 -9.14 -44.34 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -6.45 Total: 11.08 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -2.63 Total: 0.34 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: -0.39 Total: -62.86 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.37 Total: -15.68 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.19 -9.14 -44.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699058681.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.692 kcal (2) G-P(sol) polarization free energy of solvation -35.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds