Wall clock time and date at job start Fri Apr 10 2020 18:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30786 * 125.72498 * 2 1 4 4 C 1.34425 * 109.31706 * 180.02562 * 3 2 1 5 5 C 1.33857 * 107.80132 * 0.02562 * 4 3 2 6 6 N 1.34402 * 125.71877 * 179.97438 * 2 1 3 7 7 C 1.46476 * 128.44532 * 359.87302 * 6 2 1 8 8 C 1.53285 * 108.69476 * 197.27778 * 7 6 2 9 9 H 1.09000 * 109.42958 * 69.29145 * 8 7 6 10 10 C 1.50703 * 109.42833 * 189.18557 * 8 7 6 11 11 O 1.21279 * 119.99926 * 0.02562 * 10 8 7 12 12 N 1.34775 * 119.99773 * 180.02562 * 10 8 7 13 13 C 1.46504 * 119.99531 * 179.97438 * 12 10 8 14 14 C 1.53006 * 109.46883 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.47395 * 305.00649 * 14 13 12 16 16 O 1.42897 * 109.46881 * 65.00211 * 14 13 12 17 17 C 1.52999 * 109.47054 * 185.00191 * 14 13 12 18 18 N 1.46496 * 109.46662 * 180.02562 * 17 14 13 19 19 C 1.36945 * 119.99808 * 180.02562 * 18 17 14 20 20 H 1.08004 * 119.99751 * 359.97438 * 19 18 17 21 21 C 1.38815 * 120.00304 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99520 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00035 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47269 * 59.99634 * 23 21 19 25 25 H 1.48504 * 109.47054 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47171 * 299.99516 * 23 21 19 27 27 C 1.53110 * 109.71616 * 309.26094 * 8 7 6 28 28 C 1.50710 * 128.68125 * 179.85593 * 5 4 3 29 29 H 1.09005 * 109.47185 * 270.00640 * 1 2 3 30 30 H 1.09002 * 109.47020 * 29.99713 * 1 2 3 31 31 H 1.08995 * 109.47529 * 150.00326 * 1 2 3 32 32 H 1.08005 * 126.09389 * 179.97438 * 4 3 2 33 33 H 1.09003 * 109.59790 * 77.51949 * 7 6 2 34 34 H 1.08998 * 109.72762 * 317.12312 * 7 6 2 35 35 H 0.96992 * 120.00503 * 359.97438 * 12 10 8 36 36 H 1.09001 * 109.46891 * 60.00097 * 13 12 10 37 37 H 1.08993 * 109.47378 * 299.99469 * 13 12 10 38 38 H 0.96702 * 114.00429 * 59.99915 * 16 14 13 39 39 H 1.09001 * 109.47018 * 300.00144 * 17 14 13 40 40 H 1.08995 * 109.47070 * 60.00530 * 17 14 13 41 41 H 0.96998 * 120.01051 * 0.02562 * 18 17 14 42 42 H 0.97001 * 119.99215 * 180.02562 * 22 21 19 43 43 H 1.09003 * 109.49503 * 189.85678 * 27 8 7 44 44 H 1.08997 * 109.49914 * 309.95429 * 27 8 7 45 45 H 1.09000 * 109.74044 * 315.48004 * 28 5 4 46 46 H 1.08995 * 109.74474 * 76.14330 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2707 1.0618 0.0000 4 6 3.5602 0.6820 -0.0006 5 6 3.5927 -0.6561 -0.0015 6 7 2.2917 -1.0912 0.0005 7 6 1.8920 -2.5004 0.0037 8 6 3.0925 -3.3506 0.4342 9 1 3.3045 -3.1713 1.4883 10 6 2.7736 -4.8090 0.2282 11 8 1.6947 -5.1366 -0.2187 12 7 3.6872 -5.7493 0.5405 13 6 3.3769 -7.1671 0.3407 14 6 4.5747 -8.0167 0.7700 15 1 5.4649 -7.6869 0.2344 16 8 4.7833 -7.8699 2.1761 17 6 4.2998 -9.4865 0.4460 18 7 5.4464 -10.3000 0.8577 19 6 5.4284 -11.6558 0.6654 20 1 4.5686 -12.1252 0.2106 21 6 6.5146 -12.4268 1.0559 22 7 7.5622 -11.8546 1.6107 23 14 6.4896 -14.2762 0.7942 24 1 6.3439 -14.5692 -0.6542 25 1 7.7592 -14.8638 1.2925 26 1 5.3462 -14.8656 1.5360 27 6 4.3185 -2.9742 -0.4021 28 6 4.7918 -1.5692 -0.0054 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5137 32 1 4.4171 1.3395 -0.0011 33 1 1.5769 -2.7933 -0.9979 34 1 1.0695 -2.6479 0.7035 35 1 4.5502 -5.4874 0.8975 36 1 3.1631 -7.3472 -0.7129 37 1 2.5068 -7.4364 0.9392 38 1 4.0299 -8.1451 2.7163 39 1 3.4096 -9.8163 0.9817 40 1 4.1408 -9.5985 -0.6265 41 1 6.2185 -9.8785 1.2665 42 1 8.3214 -12.3934 1.8832 43 1 5.1179 -3.6925 -0.2195 44 1 4.0545 -2.9840 -1.4596 45 1 5.5259 -1.2098 -0.7265 46 1 5.2363 -1.5974 0.9894 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699058681.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:06 Heat of formation + Delta-G solvation = -53.538624 kcal Electronic energy + Delta-G solvation = -26667.223508 eV Core-core repulsion = 22784.392968 eV Total energy + Delta-G solvation = -3882.830540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.40221 -41.12339 -39.04295 -37.31817 -36.08937 -35.40387 -34.29826 -33.20425 -32.35961 -31.04164 -30.36654 -27.37638 -27.30470 -25.56057 -24.23539 -23.40527 -22.76649 -22.01215 -21.12879 -19.97695 -19.24887 -18.51174 -17.89364 -17.41763 -17.14687 -16.86113 -16.51698 -16.36556 -16.08716 -15.48547 -15.41516 -15.03906 -14.96436 -14.83716 -14.66382 -14.47877 -14.12688 -13.95421 -13.87804 -13.71818 -13.25301 -13.23004 -12.95651 -12.93825 -12.81745 -12.72325 -12.20698 -12.18222 -12.00417 -11.96410 -11.80149 -11.18879 -10.97326 -10.95467 -10.81383 -10.53080 -10.18284 -9.14938 -9.00882 -7.95093 -5.24313 1.05034 1.46839 1.47892 1.50436 1.56655 1.60602 2.10642 2.14768 2.56069 3.19821 3.35512 3.41835 3.52537 3.53114 3.60044 3.61770 3.77707 3.97650 4.04424 4.15782 4.19536 4.21826 4.31459 4.39518 4.42765 4.56930 4.60799 4.64425 4.68842 4.73228 4.81483 4.91173 4.93931 4.98684 5.02965 5.10188 5.20998 5.30988 5.43088 5.48001 5.81708 6.22893 6.26179 6.42278 6.79644 7.09630 7.10965 7.33631 8.09478 8.32160 9.27674 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.036180 B = 0.001934 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.732979 B =14477.162812 C =14983.053396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.193 3.807 3 N -0.532 5.532 4 C -0.048 4.048 5 C -0.029 4.029 6 N -0.453 5.453 7 C 0.125 3.875 8 C -0.109 4.109 9 H 0.125 0.875 10 C 0.526 3.474 11 O -0.578 6.578 12 N -0.706 5.706 13 C 0.102 3.898 14 C 0.108 3.892 15 H 0.104 0.896 16 O -0.563 6.563 17 C 0.121 3.879 18 N -0.739 5.739 19 C -0.250 4.250 20 H 0.076 0.924 21 C -0.075 4.075 22 N -0.966 5.966 23 Si 0.974 3.026 24 H -0.278 1.278 25 H -0.296 1.296 26 H -0.278 1.278 27 C -0.114 4.114 28 C -0.038 4.038 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.183 0.817 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.417 0.583 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.385 0.615 39 H 0.029 0.971 40 H 0.033 0.967 41 H 0.377 0.623 42 H 0.251 0.749 43 H 0.103 0.897 44 H 0.067 0.933 45 H 0.108 0.892 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.279 23.735 -2.454 25.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.069 4.069 3 N -0.253 5.253 4 C -0.194 4.194 5 C -0.144 4.144 6 N -0.137 5.137 7 C 0.002 3.998 8 C -0.131 4.131 9 H 0.143 0.857 10 C 0.312 3.688 11 O -0.457 6.457 12 N -0.357 5.357 13 C -0.023 4.023 14 C 0.048 3.952 15 H 0.122 0.878 16 O -0.369 6.369 17 C -0.007 4.007 18 N -0.382 5.382 19 C -0.381 4.381 20 H 0.094 0.906 21 C -0.268 4.268 22 N -0.617 5.617 23 Si 0.803 3.197 24 H -0.204 1.204 25 H -0.222 1.222 26 H -0.204 1.204 27 C -0.152 4.152 28 C -0.076 4.076 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.200 0.800 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.254 0.746 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.234 0.766 39 H 0.047 0.953 40 H 0.051 0.949 41 H 0.210 0.790 42 H 0.060 0.940 43 H 0.121 0.879 44 H 0.086 0.914 45 H 0.126 0.874 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.892 24.214 -3.024 26.723 hybrid contribution 0.487 -1.853 0.329 1.944 sum -10.405 22.361 -2.696 24.810 Atomic orbital electron populations 1.20300 0.83045 1.04776 1.04475 1.23707 0.96925 0.81064 1.05179 1.70424 1.03152 1.29368 1.22319 1.22200 0.94858 0.93047 1.09334 1.21613 0.86386 0.95632 1.10740 1.45374 1.06552 1.07301 1.54481 1.21696 0.97600 0.76135 1.04320 1.21502 0.96881 0.90172 1.04526 0.85696 1.20472 0.83628 0.87972 0.76734 1.90729 1.24986 1.83430 1.46599 1.45764 1.19146 1.05665 1.65165 1.21872 0.97699 0.80305 1.02400 1.22099 0.97794 0.92702 0.82582 0.87850 1.86558 1.45739 1.88060 1.16561 1.21415 0.90592 0.90728 0.97956 1.42393 1.18223 1.03801 1.73830 1.19600 1.00994 0.84986 1.32559 0.90647 1.25587 0.96581 1.02497 1.02091 1.69823 1.07453 1.35981 1.48417 0.85213 0.76477 0.80165 0.77891 1.20388 1.22198 1.20412 1.21704 0.95974 0.98084 0.99424 1.20335 0.92039 0.90531 1.04723 0.89056 0.88929 0.89560 0.80020 0.89360 0.87865 0.74614 0.90429 0.90772 0.76644 0.95275 0.94919 0.79012 0.93992 0.87851 0.91423 0.87396 0.87884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.24 71.24 0.73 -0.13 16 2 C 0.19 3.87 7.94 138.25 1.10 4.97 16 3 N -0.53 -12.93 11.27 -188.78 -2.13 -15.05 16 4 C -0.05 -0.97 11.84 83.30 0.99 0.02 16 5 C -0.03 -0.49 6.57 40.73 0.27 -0.22 16 6 N -0.45 -7.93 3.13 -500.11 -1.57 -9.50 16 7 C 0.12 1.83 5.32 86.48 0.46 2.29 16 8 C -0.11 -1.34 2.52 -11.41 -0.03 -1.37 16 9 H 0.13 1.22 8.11 -2.39 -0.02 1.20 16 10 C 0.53 9.40 7.15 87.66 0.63 10.03 16 11 O -0.58 -14.79 15.84 -3.03 -0.05 -14.83 16 12 N -0.71 -11.60 5.32 -463.05 -2.46 -14.06 16 13 C 0.10 2.11 5.31 86.38 0.46 2.57 16 14 C 0.11 2.81 3.09 30.60 0.09 2.90 16 15 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 16 O -0.56 -15.35 13.03 -148.98 -1.94 -17.29 16 17 C 0.12 4.25 5.92 86.38 0.51 4.76 16 18 N -0.74 -35.80 5.49 -343.45 -1.89 -37.68 16 19 C -0.25 -13.57 9.99 84.03 0.84 -12.73 16 20 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 21 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 22 N -0.97 -58.31 13.06 21.65 0.28 -58.02 16 23 Si 0.97 45.23 29.55 68.60 2.03 47.26 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 25 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 26 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 27 C -0.11 -1.11 5.22 30.79 0.16 -0.95 16 28 C -0.04 -0.36 6.31 30.01 0.19 -0.17 16 29 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 0.85 7.95 -2.39 -0.02 0.83 16 32 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16 33 H 0.09 1.46 7.81 -2.39 -0.02 1.44 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.42 5.34 7.79 -92.71 -0.72 4.62 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.38 8.61 9.05 -74.06 -0.67 7.94 16 39 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.38 19.82 7.54 -92.71 -0.70 19.12 16 42 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 43 H 0.10 0.69 7.30 -2.39 -0.02 0.67 16 44 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 45 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -75.54 380.23 -1.94 -77.48 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: -1.08 Total: 33.50 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 6.86 Total: 8.20 kcal Atomic # 7 Polarization: -126.56 SS G_CDS: -7.76 Total: -134.32 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -1.99 Total: -32.12 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -75.54 -1.94 -77.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699058681.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.942 kcal (2) G-P(sol) polarization free energy of solvation -75.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds