Wall clock time and date at job start Fri Apr 10 2020 18:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30784 * 125.72502 * 2 1 4 4 C 1.34427 * 109.32579 * 179.97438 * 3 2 1 5 5 C 1.33864 * 107.79383 * 359.97438 * 4 3 2 6 6 N 1.34411 * 125.72281 * 180.02562 * 2 1 3 7 7 C 1.46467 * 128.44856 * 0.14782 * 6 2 1 8 8 C 1.53282 * 108.69747 * 162.71193 * 7 6 2 9 9 H 1.08998 * 109.43359 * 290.73510 * 8 7 6 10 10 C 1.50703 * 109.43608 * 170.83226 * 8 7 6 11 11 O 1.21283 * 119.99488 * 359.90089 * 10 8 7 12 12 N 1.34777 * 120.00290 * 179.90529 * 10 8 7 13 13 C 1.46498 * 119.99828 * 180.27728 * 12 10 8 14 14 C 1.52996 * 109.47059 * 179.72339 * 13 12 10 15 15 H 1.09008 * 109.47304 * 304.99667 * 14 13 12 16 16 O 1.42902 * 109.47328 * 64.99617 * 14 13 12 17 17 C 1.53003 * 109.47530 * 184.99929 * 14 13 12 18 18 N 1.46491 * 109.47329 * 179.97438 * 17 14 13 19 19 C 1.36943 * 120.00083 * 180.02562 * 18 17 14 20 20 H 1.08000 * 119.99413 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.00067 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00346 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99532 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47406 * 60.00258 * 23 21 19 25 25 H 1.48507 * 109.46670 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47317 * 299.99862 * 23 21 19 27 27 C 1.53116 * 109.66752 * 50.78259 * 8 7 6 28 28 C 1.50714 * 128.67733 * 180.15948 * 5 4 3 29 29 H 1.09005 * 109.46713 * 269.97407 * 1 2 3 30 30 H 1.08993 * 109.47263 * 29.97555 * 1 2 3 31 31 H 1.09003 * 109.47210 * 149.97888 * 1 2 3 32 32 H 1.07997 * 126.10796 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.60145 * 42.94550 * 7 6 2 34 34 H 1.09003 * 109.59933 * 282.47049 * 7 6 2 35 35 H 0.97001 * 119.99727 * 359.97438 * 12 10 8 36 36 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 37 37 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 38 38 H 0.96696 * 113.99765 * 60.00422 * 16 14 13 39 39 H 1.09000 * 109.46800 * 300.00452 * 17 14 13 40 40 H 1.09002 * 109.46892 * 59.99206 * 17 14 13 41 41 H 0.97004 * 120.00228 * 359.97438 * 18 17 14 42 42 H 0.96990 * 120.00008 * 179.97438 * 22 21 19 43 43 H 1.08998 * 109.49500 * 50.01258 * 27 8 7 44 44 H 1.09001 * 109.49832 * 170.11264 * 27 8 7 45 45 H 1.08996 * 109.75141 * 283.84849 * 28 5 4 46 46 H 1.08999 * 109.74395 * 44.56746 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2706 1.0617 0.0000 4 6 3.5602 0.6822 0.0006 5 6 3.5927 -0.6560 0.0015 6 7 2.2917 -1.0912 -0.0005 7 6 1.8922 -2.5004 -0.0041 8 6 3.0928 -3.3504 -0.4347 9 1 3.3052 -3.1705 -1.4885 10 6 2.7740 -4.8089 -0.2295 11 8 1.6955 -5.1367 0.2181 12 7 3.6873 -5.7491 -0.5433 13 6 3.3750 -7.1672 -0.3496 14 6 4.5699 -8.0169 -0.7865 15 1 4.8373 -7.7671 -1.8134 16 8 5.6812 -7.7537 0.0724 17 6 4.2000 -9.4991 -0.7021 18 7 5.3439 -10.3126 -1.1211 19 6 5.2468 -11.6786 -1.1281 20 1 4.3269 -12.1560 -0.8243 21 6 6.3306 -12.4494 -1.5256 22 7 7.4514 -11.8675 -1.8964 23 14 6.1982 -14.3127 -1.5344 24 1 5.1072 -14.7272 -2.4526 25 1 7.4825 -14.8979 -1.9965 26 1 5.8997 -14.7943 -0.1618 27 6 4.3178 -2.9740 0.4033 28 6 4.7919 -1.5690 0.0057 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8901 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 4.4170 1.3396 0.0003 33 1 1.0708 -2.6458 -0.7057 34 1 1.5770 -2.7936 0.9973 35 1 4.5497 -5.4869 -0.9016 36 1 3.1635 -7.3520 0.7037 37 1 2.5029 -7.4322 -0.9472 38 1 5.5144 -7.9535 1.0037 39 1 3.9326 -9.7489 0.3247 40 1 3.3523 -9.6999 -1.3573 41 1 6.1700 -9.8837 -1.3943 42 1 8.2088 -12.4062 -2.1738 43 1 4.0524 -2.9840 1.4604 44 1 5.1175 -3.6920 0.2216 45 1 5.2367 -1.5973 -0.9890 46 1 5.5254 -1.2100 0.7276 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699058684.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:17 Heat of formation + Delta-G solvation = -53.480732 kcal Electronic energy + Delta-G solvation = -26682.468194 eV Core-core repulsion = 22799.640164 eV Total energy + Delta-G solvation = -3882.828030 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.40153 -41.12136 -39.03856 -37.31639 -36.08946 -35.39975 -34.29972 -33.20409 -32.35954 -31.03673 -30.36460 -27.37742 -27.30489 -25.55868 -24.23608 -23.39897 -22.76500 -22.01072 -21.12552 -19.97583 -19.24948 -18.50418 -17.89193 -17.43017 -17.18009 -16.85131 -16.51723 -16.32149 -16.08580 -15.51499 -15.40090 -14.99702 -14.98750 -14.84246 -14.68775 -14.44177 -14.14227 -13.94514 -13.84513 -13.77709 -13.25086 -13.21097 -12.95855 -12.92529 -12.81889 -12.72257 -12.20738 -12.16952 -12.00390 -11.96578 -11.80119 -11.18555 -10.97327 -10.95310 -10.81074 -10.53119 -10.18086 -9.14993 -9.00897 -7.95067 -5.24323 1.05331 1.46914 1.47860 1.50412 1.56618 1.60472 2.10964 2.14716 2.56048 3.20087 3.35388 3.41578 3.52061 3.54732 3.59616 3.61590 3.77900 3.98313 4.04517 4.16124 4.21136 4.22271 4.28724 4.39659 4.42608 4.54745 4.61356 4.64386 4.69190 4.73305 4.83175 4.91779 4.93948 4.99256 5.03322 5.10558 5.21011 5.31128 5.43392 5.48011 5.81746 6.22911 6.26182 6.42313 6.80327 7.09706 7.11070 7.33640 8.09481 8.32170 9.27712 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.036947 B = 0.001937 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.669748 B =14452.739187 C =15032.974623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.193 3.807 3 N -0.532 5.532 4 C -0.048 4.048 5 C -0.030 4.030 6 N -0.453 5.453 7 C 0.125 3.875 8 C -0.110 4.110 9 H 0.126 0.874 10 C 0.526 3.474 11 O -0.578 6.578 12 N -0.706 5.706 13 C 0.102 3.898 14 C 0.108 3.892 15 H 0.102 0.898 16 O -0.562 6.562 17 C 0.121 3.879 18 N -0.739 5.739 19 C -0.250 4.250 20 H 0.076 0.924 21 C -0.075 4.075 22 N -0.966 5.966 23 Si 0.974 3.026 24 H -0.278 1.278 25 H -0.296 1.296 26 H -0.278 1.278 27 C -0.113 4.113 28 C -0.038 4.038 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.183 0.817 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.417 0.583 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.385 0.615 39 H 0.030 0.970 40 H 0.032 0.968 41 H 0.377 0.623 42 H 0.251 0.749 43 H 0.066 0.934 44 H 0.103 0.897 45 H 0.103 0.897 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.648 23.810 4.048 26.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.069 4.069 3 N -0.253 5.253 4 C -0.194 4.194 5 C -0.144 4.144 6 N -0.137 5.137 7 C 0.003 3.997 8 C -0.131 4.131 9 H 0.143 0.857 10 C 0.312 3.688 11 O -0.457 6.457 12 N -0.357 5.357 13 C -0.023 4.023 14 C 0.048 3.952 15 H 0.120 0.880 16 O -0.368 6.368 17 C -0.007 4.007 18 N -0.382 5.382 19 C -0.381 4.381 20 H 0.094 0.906 21 C -0.267 4.267 22 N -0.617 5.617 23 Si 0.802 3.198 24 H -0.204 1.204 25 H -0.222 1.222 26 H -0.204 1.204 27 C -0.151 4.151 28 C -0.076 4.076 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.200 0.800 33 H 0.121 0.879 34 H 0.106 0.894 35 H 0.254 0.746 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.234 0.766 39 H 0.048 0.952 40 H 0.050 0.950 41 H 0.210 0.790 42 H 0.060 0.940 43 H 0.085 0.915 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.572 24.248 3.834 26.729 hybrid contribution 0.685 -1.828 0.177 1.960 sum -9.887 22.420 4.012 24.830 Atomic orbital electron populations 1.20299 0.83055 1.04852 1.04374 1.23702 0.96921 0.81068 1.05192 1.70421 1.03152 1.29369 1.22330 1.22200 0.94853 0.93050 1.09325 1.21616 0.86383 0.95629 1.10751 1.45376 1.06552 1.07309 1.54462 1.21705 0.97588 0.76133 1.04314 1.21512 0.96904 0.90175 1.04541 0.85655 1.20476 0.83592 0.87977 0.76770 1.90731 1.25024 1.83423 1.46570 1.45764 1.19022 1.05660 1.65292 1.21869 0.97805 0.80289 1.02307 1.22088 0.85781 0.92066 0.95221 0.87972 1.86557 1.39097 1.88541 1.22612 1.21415 0.90682 0.90684 0.97910 1.42392 1.13151 1.02553 1.80148 1.19598 0.97990 0.84159 1.36395 0.90648 1.25582 0.95976 1.02477 1.02706 1.69815 1.03748 1.35678 1.52437 0.85216 0.76373 0.80207 0.77965 1.20405 1.22198 1.20395 1.21699 0.95965 0.98051 0.99350 1.20345 0.92027 0.90548 1.04702 0.89319 0.88861 0.89388 0.80020 0.87851 0.89355 0.74611 0.90734 0.90477 0.76635 0.95232 0.94982 0.79011 0.93985 0.91482 0.87884 0.87872 0.87437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.24 71.23 0.73 -0.13 16 2 C 0.19 3.87 7.94 138.24 1.10 4.96 16 3 N -0.53 -12.93 11.27 -188.78 -2.13 -15.06 16 4 C -0.05 -0.96 11.84 83.30 0.99 0.02 16 5 C -0.03 -0.49 6.57 40.73 0.27 -0.22 16 6 N -0.45 -7.93 3.13 -500.13 -1.57 -9.49 16 7 C 0.12 1.83 5.38 86.48 0.47 2.30 16 8 C -0.11 -1.35 2.52 -11.41 -0.03 -1.38 16 9 H 0.13 1.20 8.11 -2.39 -0.02 1.18 16 10 C 0.53 9.39 7.15 87.66 0.63 10.02 16 11 O -0.58 -14.78 15.84 -3.04 -0.05 -14.83 16 12 N -0.71 -11.58 5.32 -463.07 -2.46 -14.05 16 13 C 0.10 2.11 5.31 86.38 0.46 2.57 16 14 C 0.11 2.81 3.09 30.59 0.09 2.91 16 15 H 0.10 2.74 8.14 -2.38 -0.02 2.72 16 16 O -0.56 -15.13 13.03 -148.98 -1.94 -17.07 16 17 C 0.12 4.25 5.92 86.38 0.51 4.76 16 18 N -0.74 -35.80 5.49 -343.46 -1.89 -37.68 16 19 C -0.25 -13.57 9.99 84.03 0.84 -12.73 16 20 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 21 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 22 N -0.97 -58.31 13.06 21.65 0.28 -58.02 16 23 Si 0.97 45.23 29.55 68.60 2.03 47.26 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 27 C -0.11 -1.11 5.23 30.81 0.16 -0.95 16 28 C -0.04 -0.36 6.31 30.03 0.19 -0.17 16 29 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 0.83 7.59 -2.39 -0.02 0.81 16 32 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16 33 H 0.10 1.38 7.72 -2.39 -0.02 1.37 16 34 H 0.09 1.46 7.81 -2.39 -0.02 1.44 16 35 H 0.42 5.34 7.80 -92.71 -0.72 4.61 16 36 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.38 8.47 9.04 -74.06 -0.67 7.80 16 39 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.38 19.81 7.54 -92.71 -0.70 19.11 16 42 H 0.25 14.74 8.31 -92.72 -0.77 13.97 16 43 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 44 H 0.10 0.74 7.30 -2.39 -0.02 0.72 16 45 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -75.44 379.54 -1.93 -77.37 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: -1.07 Total: 33.37 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 6.87 Total: 8.20 kcal Atomic # 7 Polarization: -126.54 SS G_CDS: -7.76 Total: -134.31 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -1.99 Total: -31.90 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -75.44 -1.93 -77.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699058684.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.891 kcal (2) G-P(sol) polarization free energy of solvation -75.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds