Wall clock time and date at job start Fri Apr 10 2020 18:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30788 * 125.72611 * 2 1 4 4 C 1.34426 * 109.32108 * 180.02562 * 3 2 1 5 5 C 1.33859 * 107.79939 * 0.02562 * 4 3 2 6 6 N 1.34411 * 125.72283 * 180.02562 * 2 1 3 7 7 C 1.46467 * 128.44363 * 359.83995 * 6 2 1 8 8 C 1.53283 * 108.69880 * 197.29580 * 7 6 2 9 9 C 1.53109 * 109.71375 * 309.26208 * 8 7 6 10 10 H 1.09008 * 109.49991 * 309.91782 * 9 8 7 11 11 C 1.50703 * 109.49668 * 189.85496 * 9 8 7 12 12 O 1.21281 * 120.00248 * 359.97438 * 11 9 8 13 13 N 1.34774 * 119.99737 * 179.97438 * 11 9 8 14 14 C 1.46503 * 119.99721 * 179.97438 * 13 11 9 15 15 C 1.53002 * 109.47189 * 180.02562 * 14 13 11 16 16 H 1.09004 * 109.46930 * 304.99963 * 15 14 13 17 17 O 1.42905 * 109.47079 * 64.99736 * 15 14 13 18 18 C 1.52997 * 109.47143 * 184.99897 * 15 14 13 19 19 N 1.46500 * 109.47007 * 179.97438 * 18 15 14 20 20 C 1.36943 * 120.00062 * 180.02562 * 19 18 15 21 21 H 1.07999 * 119.99847 * 359.97438 * 20 19 18 22 22 C 1.38815 * 119.99863 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00198 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99691 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47023 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47352 * 120.00042 * 24 22 20 27 27 H 1.48504 * 109.46912 * 240.00158 * 24 22 20 28 28 C 1.50710 * 128.67679 * 179.87864 * 5 4 3 29 29 H 1.08999 * 109.47470 * 269.96167 * 1 2 3 30 30 H 1.09003 * 109.47288 * 29.96135 * 1 2 3 31 31 H 1.09001 * 109.47425 * 149.96149 * 1 2 3 32 32 H 1.08005 * 126.09753 * 179.97438 * 4 3 2 33 33 H 1.09008 * 109.59654 * 77.53410 * 7 6 2 34 34 H 1.08997 * 109.60218 * 317.06850 * 7 6 2 35 35 H 1.09004 * 109.42834 * 189.18743 * 8 7 6 36 36 H 1.08999 * 109.38258 * 69.31197 * 8 7 6 37 37 H 0.96993 * 120.00520 * 0.02562 * 13 11 9 38 38 H 1.08997 * 109.47122 * 60.00313 * 14 13 11 39 39 H 1.09005 * 109.47144 * 299.99936 * 14 13 11 40 40 H 0.96702 * 113.99404 * 60.00301 * 17 15 14 41 41 H 1.08992 * 109.47303 * 299.99548 * 18 15 14 42 42 H 1.09002 * 109.47153 * 60.00035 * 18 15 14 43 43 H 0.96998 * 120.00098 * 359.97438 * 19 18 15 44 44 H 0.97001 * 120.00051 * 179.97438 * 23 22 20 45 45 H 1.08996 * 109.74560 * 76.20044 * 28 5 4 46 46 H 1.08996 * 109.74906 * 315.47272 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5602 0.6821 -0.0006 5 6 3.5927 -0.6561 -0.0015 6 7 2.2917 -1.0912 -0.0005 7 6 1.8921 -2.5003 0.0021 8 6 3.0927 -3.3508 0.4320 9 6 4.3186 -2.9740 -0.4043 10 1 4.0545 -2.9838 -1.4619 11 6 5.4238 -3.9671 -0.1526 12 8 5.2493 -4.8857 0.6198 13 7 6.6061 -3.8344 -0.7858 14 6 7.6807 -4.7995 -0.5407 15 6 8.9053 -4.4225 -1.3768 16 1 8.6197 -4.3472 -2.4261 17 8 9.4175 -3.1650 -0.9312 18 6 9.9823 -5.4973 -1.2172 19 7 11.1547 -5.1366 -2.0183 20 6 12.2524 -5.9553 -2.0327 21 1 12.2540 -6.8666 -1.4531 22 6 13.3630 -5.6137 -2.7922 23 7 13.3609 -4.5033 -3.4989 24 14 14.8601 -6.7308 -2.8123 25 1 14.6113 -7.9076 -1.9414 26 1 15.1179 -7.1881 -4.2014 27 1 16.0414 -5.9844 -2.3096 28 6 4.7919 -1.5690 -0.0049 29 1 -0.3634 -0.0007 1.0276 30 1 -0.3634 0.8903 -0.5132 31 1 -0.3634 -0.8896 -0.5144 32 1 4.4171 1.3396 -0.0011 33 1 1.5768 -2.7928 -0.9996 34 1 1.0707 -2.6462 0.7035 35 1 2.8619 -4.4056 0.2825 36 1 3.3039 -3.1717 1.4863 37 1 6.7458 -3.0995 -1.4033 38 1 7.3432 -5.7976 -0.8197 39 1 7.9454 -4.7877 0.5166 40 1 9.6921 -3.1585 -0.0040 41 1 10.2680 -5.5726 -0.1681 42 1 9.5916 -6.4565 -1.5571 43 1 11.1531 -4.3183 -2.5391 44 1 14.1371 -4.2645 -4.0293 45 1 5.2354 -1.5980 0.9903 46 1 5.5262 -1.2097 -0.7258 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699062568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:21 Heat of formation + Delta-G solvation = -26.997091 kcal Electronic energy + Delta-G solvation = -26638.924482 eV Core-core repulsion = 22757.244869 eV Total energy + Delta-G solvation = -3881.679613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.71837 -40.18800 -37.84081 -36.57633 -34.57715 -34.07135 -33.72581 -31.66785 -31.30201 -30.18152 -29.17286 -27.14513 -25.41949 -24.66127 -23.28188 -22.30781 -21.49818 -21.00884 -20.36694 -19.33908 -17.61946 -17.19927 -17.08950 -16.48732 -16.31648 -16.08219 -15.37568 -15.24985 -14.55147 -14.47703 -14.43603 -14.17455 -14.00153 -13.85609 -13.69703 -13.35458 -13.30092 -13.03260 -12.76493 -12.67197 -12.39623 -12.29272 -12.18435 -11.91359 -11.62847 -11.49626 -10.99467 -10.86664 -10.68942 -10.34474 -10.17488 -10.03718 -9.84585 -9.82631 -9.54138 -9.23961 -8.94767 -8.48639 -6.97971 -5.79924 -3.09854 1.70889 2.36354 2.39778 2.84537 2.90905 3.40806 3.46370 3.48734 3.91470 4.10079 4.11272 4.16874 4.33903 4.49486 4.55379 4.63207 4.67154 4.73200 4.79428 4.88492 4.97233 5.08222 5.13257 5.17152 5.23506 5.27214 5.38123 5.44665 5.51358 5.54759 5.60690 5.62785 5.71488 5.88107 6.06762 6.13792 6.26799 6.45099 6.47746 6.61411 6.89634 7.29536 7.65385 7.81482 7.87567 7.99592 8.38164 9.50040 10.06198 10.41969 11.42361 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.031206 B = 0.001970 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.038541 B =14207.814854 C =14878.717971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.205 3.795 3 N -0.493 5.493 4 C -0.017 4.017 5 C -0.024 4.024 6 N -0.453 5.453 7 C 0.103 3.897 8 C -0.113 4.113 9 C -0.111 4.111 10 H 0.103 0.897 11 C 0.518 3.482 12 O -0.541 6.541 13 N -0.717 5.717 14 C 0.089 3.911 15 C 0.089 3.911 16 H 0.104 0.896 17 O -0.551 6.551 18 C 0.127 3.873 19 N -0.725 5.725 20 C -0.245 4.245 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.929 5.929 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.035 4.035 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.171 0.829 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.406 0.594 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.374 0.626 41 H 0.023 0.977 42 H 0.028 0.972 43 H 0.389 0.611 44 H 0.255 0.745 45 H 0.088 0.912 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.260 6.307 7.395 28.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.057 4.057 3 N -0.213 5.213 4 C -0.165 4.165 5 C -0.138 4.138 6 N -0.138 5.138 7 C -0.019 4.019 8 C -0.151 4.151 9 C -0.133 4.133 10 H 0.121 0.879 11 C 0.304 3.696 12 O -0.419 6.419 13 N -0.369 5.369 14 C -0.035 4.035 15 C 0.029 3.971 16 H 0.122 0.878 17 O -0.356 6.356 18 C -0.002 4.002 19 N -0.371 5.371 20 C -0.376 4.376 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.577 5.577 24 Si 0.739 3.261 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.073 4.073 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.188 0.812 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.241 0.759 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.221 0.779 41 H 0.041 0.959 42 H 0.046 0.954 43 H 0.224 0.776 44 H 0.065 0.935 45 H 0.107 0.893 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -27.734 6.325 7.363 29.384 hybrid contribution 1.439 -1.075 0.005 1.796 sum -26.295 5.250 7.368 27.808 Atomic orbital electron populations 1.20161 0.84982 1.03951 1.03431 1.23129 0.95609 0.81264 1.05702 1.70466 1.02007 1.28069 1.20742 1.21865 0.94871 0.91896 1.07859 1.20951 0.85276 0.95314 1.12242 1.45300 1.06296 1.07225 1.54946 1.22041 0.98864 0.77678 1.03336 1.21686 0.91829 1.00734 1.00891 1.21439 0.94719 0.94621 1.02513 0.87935 1.20337 0.83184 0.85742 0.80381 1.90719 1.81440 1.33728 1.35973 1.45951 1.13184 1.31213 1.46527 1.22145 0.87459 0.93000 1.00936 1.22386 0.91021 0.85329 0.98352 0.87811 1.86581 1.84432 1.32246 1.32371 1.21189 0.88411 0.94921 0.95698 1.42232 1.12508 1.27235 1.55076 1.19263 0.92697 1.02246 1.23361 0.91153 1.24770 0.98480 0.97721 0.99886 1.69686 1.30240 1.24247 1.33540 0.86109 0.83054 0.79701 0.77247 1.20549 1.21809 1.21794 1.20191 0.93447 0.89979 1.03717 0.90246 0.89155 0.90971 0.81158 0.89518 0.88685 0.88255 0.90029 0.75911 0.90385 0.90959 0.77896 0.95944 0.95425 0.77635 0.93488 0.89339 0.88553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.24 36.00 0.37 0.01 16 2 C 0.20 1.94 7.94 -155.75 -1.24 0.70 16 3 N -0.49 -5.93 11.27 -11.02 -0.12 -6.06 16 4 C -0.02 -0.19 11.84 -17.95 -0.21 -0.40 16 5 C -0.02 -0.22 6.57 -81.73 -0.54 -0.76 16 6 N -0.45 -3.82 3.13 -109.43 -0.34 -4.17 16 7 C 0.10 0.56 6.61 -3.91 -0.03 0.54 16 8 C -0.11 -0.78 4.65 -26.53 -0.12 -0.90 16 9 C -0.11 -0.83 2.55 -91.43 -0.23 -1.07 16 10 H 0.10 0.66 8.12 -51.92 -0.42 0.24 16 11 C 0.52 5.42 7.13 -10.99 -0.08 5.34 16 12 O -0.54 -7.65 15.82 5.56 0.09 -7.56 16 13 N -0.72 -7.17 5.41 -60.29 -0.33 -7.49 16 14 C 0.09 1.06 5.31 -4.04 -0.02 1.03 16 15 C 0.09 1.27 3.09 -26.73 -0.08 1.19 16 16 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 17 O -0.55 -8.19 13.03 -35.23 -0.46 -8.65 16 18 C 0.13 2.36 5.92 -4.04 -0.02 2.34 16 19 N -0.73 -17.97 5.49 -59.91 -0.33 -18.30 16 20 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 24 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 C -0.03 -0.26 5.45 -27.60 -0.15 -0.41 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.25 7.95 -51.93 -0.41 -0.17 16 32 H 0.17 1.50 8.06 -52.48 -0.42 1.08 16 33 H 0.09 0.36 8.14 -51.92 -0.42 -0.06 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.10 0.68 7.77 -51.93 -0.40 0.28 16 36 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 37 H 0.41 3.47 8.20 -40.82 -0.33 3.13 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.37 4.64 9.05 45.56 0.41 5.05 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.39 10.34 7.54 -40.82 -0.31 10.03 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.09 0.70 8.11 -51.93 -0.42 0.27 16 46 H 0.10 0.61 7.95 -51.93 -0.41 0.20 16 LS Contribution 381.16 15.07 5.74 5.74 Total: -1.00 -35.99 381.16 -9.15 -45.14 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -6.50 Total: 11.21 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -2.60 Total: 0.23 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: -0.40 Total: -63.35 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.37 Total: -16.21 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.99 -9.15 -45.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699062568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.143 kcal (2) G-P(sol) polarization free energy of solvation -35.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds