Wall clock time and date at job start Fri Apr 10 2020 18:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30788 * 125.72611 * 2 1 4 4 C 1.34426 * 109.32108 * 180.02562 * 3 2 1 5 5 C 1.33859 * 107.79939 * 0.02562 * 4 3 2 6 6 N 1.34411 * 125.72283 * 180.02562 * 2 1 3 7 7 C 1.46467 * 128.44363 * 359.83995 * 6 2 1 8 8 C 1.53283 * 108.69880 * 197.29580 * 7 6 2 9 9 C 1.53109 * 109.71375 * 309.26208 * 8 7 6 10 10 H 1.09008 * 109.49991 * 309.91782 * 9 8 7 11 11 C 1.50703 * 109.49668 * 189.85496 * 9 8 7 12 12 O 1.21281 * 120.00248 * 359.97438 * 11 9 8 13 13 N 1.34774 * 119.99737 * 179.97438 * 11 9 8 14 14 C 1.46503 * 119.99721 * 179.97438 * 13 11 9 15 15 C 1.53002 * 109.47189 * 180.02562 * 14 13 11 16 16 H 1.09004 * 109.46930 * 304.99963 * 15 14 13 17 17 O 1.42905 * 109.47079 * 64.99736 * 15 14 13 18 18 C 1.52997 * 109.47143 * 184.99897 * 15 14 13 19 19 N 1.46500 * 109.47007 * 179.97438 * 18 15 14 20 20 C 1.36943 * 120.00062 * 180.02562 * 19 18 15 21 21 H 1.07999 * 119.99847 * 359.97438 * 20 19 18 22 22 C 1.38815 * 119.99863 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00198 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99691 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47023 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47352 * 120.00042 * 24 22 20 27 27 H 1.48504 * 109.46912 * 240.00158 * 24 22 20 28 28 C 1.50710 * 128.67679 * 179.87864 * 5 4 3 29 29 H 1.08999 * 109.47470 * 269.96167 * 1 2 3 30 30 H 1.09003 * 109.47288 * 29.96135 * 1 2 3 31 31 H 1.09001 * 109.47425 * 149.96149 * 1 2 3 32 32 H 1.08005 * 126.09753 * 179.97438 * 4 3 2 33 33 H 1.09008 * 109.59654 * 77.53410 * 7 6 2 34 34 H 1.08997 * 109.60218 * 317.06850 * 7 6 2 35 35 H 1.09004 * 109.42834 * 189.18743 * 8 7 6 36 36 H 1.08999 * 109.38258 * 69.31197 * 8 7 6 37 37 H 0.96993 * 120.00520 * 0.02562 * 13 11 9 38 38 H 1.08997 * 109.47122 * 60.00313 * 14 13 11 39 39 H 1.09005 * 109.47144 * 299.99936 * 14 13 11 40 40 H 0.96702 * 113.99404 * 60.00301 * 17 15 14 41 41 H 1.08992 * 109.47303 * 299.99548 * 18 15 14 42 42 H 1.09002 * 109.47153 * 60.00035 * 18 15 14 43 43 H 0.96998 * 120.00098 * 359.97438 * 19 18 15 44 44 H 0.97001 * 120.00051 * 179.97438 * 23 22 20 45 45 H 1.08996 * 109.74560 * 76.20044 * 28 5 4 46 46 H 1.08996 * 109.74906 * 315.47272 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5602 0.6821 -0.0006 5 6 3.5927 -0.6561 -0.0015 6 7 2.2917 -1.0912 -0.0005 7 6 1.8921 -2.5003 0.0021 8 6 3.0927 -3.3508 0.4320 9 6 4.3186 -2.9740 -0.4043 10 1 4.0545 -2.9838 -1.4619 11 6 5.4238 -3.9671 -0.1526 12 8 5.2493 -4.8857 0.6198 13 7 6.6061 -3.8344 -0.7858 14 6 7.6807 -4.7995 -0.5407 15 6 8.9053 -4.4225 -1.3768 16 1 8.6197 -4.3472 -2.4261 17 8 9.4175 -3.1650 -0.9312 18 6 9.9823 -5.4973 -1.2172 19 7 11.1547 -5.1366 -2.0183 20 6 12.2524 -5.9553 -2.0327 21 1 12.2540 -6.8666 -1.4531 22 6 13.3630 -5.6137 -2.7922 23 7 13.3609 -4.5033 -3.4989 24 14 14.8601 -6.7308 -2.8123 25 1 14.6113 -7.9076 -1.9414 26 1 15.1179 -7.1881 -4.2014 27 1 16.0414 -5.9844 -2.3096 28 6 4.7919 -1.5690 -0.0049 29 1 -0.3634 -0.0007 1.0276 30 1 -0.3634 0.8903 -0.5132 31 1 -0.3634 -0.8896 -0.5144 32 1 4.4171 1.3396 -0.0011 33 1 1.5768 -2.7928 -0.9996 34 1 1.0707 -2.6462 0.7035 35 1 2.8619 -4.4056 0.2825 36 1 3.3039 -3.1717 1.4863 37 1 6.7458 -3.0995 -1.4033 38 1 7.3432 -5.7976 -0.8197 39 1 7.9454 -4.7877 0.5166 40 1 9.6921 -3.1585 -0.0040 41 1 10.2680 -5.5726 -0.1681 42 1 9.5916 -6.4565 -1.5571 43 1 11.1531 -4.3183 -2.5391 44 1 14.1371 -4.2645 -4.0293 45 1 5.2354 -1.5980 0.9903 46 1 5.5262 -1.2097 -0.7258 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699062568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:20 Heat of formation + Delta-G solvation = -54.776037 kcal Electronic energy + Delta-G solvation = -26640.129067 eV Core-core repulsion = 22757.244869 eV Total energy + Delta-G solvation = -3882.884199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.36994 -41.05803 -39.03283 -37.28218 -36.07697 -35.36643 -34.37348 -33.18811 -32.23128 -30.89427 -30.38332 -27.96075 -26.81109 -25.31541 -24.62632 -23.39742 -22.75355 -21.64136 -21.24610 -19.95865 -19.24902 -18.40099 -17.80325 -17.54095 -17.19592 -16.93442 -16.46514 -16.29316 -16.14853 -15.51941 -15.10412 -15.02820 -14.95302 -14.79439 -14.72953 -14.49826 -14.15730 -13.94004 -13.85159 -13.66976 -13.20539 -13.15842 -12.95397 -12.88619 -12.79415 -12.76472 -12.19742 -12.12518 -12.07395 -11.95586 -11.80645 -11.22013 -11.01048 -10.94382 -10.72046 -10.46812 -10.15016 -9.16821 -9.01232 -7.95611 -5.24888 1.05706 1.47670 1.48186 1.53730 1.58292 1.82506 2.05894 2.12798 2.55561 3.29382 3.36530 3.47542 3.52274 3.56491 3.61486 3.63446 3.77188 3.97689 4.05101 4.14894 4.21396 4.25424 4.32847 4.40100 4.47946 4.59982 4.62674 4.67165 4.71504 4.74489 4.75487 4.86655 4.93636 4.94158 5.07099 5.09114 5.21562 5.35635 5.41380 5.48286 5.79505 6.25862 6.30700 6.47977 6.80618 7.12786 7.16507 7.33167 8.08939 8.31697 9.27676 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.031206 B = 0.001970 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.038541 B =14207.814854 C =14878.717971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.199 3.801 3 N -0.537 5.537 4 C -0.045 4.045 5 C -0.026 4.026 6 N -0.454 5.454 7 C 0.103 3.897 8 C -0.110 4.110 9 C -0.102 4.102 10 H 0.120 0.880 11 C 0.521 3.479 12 O -0.578 6.578 13 N -0.710 5.710 14 C 0.102 3.898 15 C 0.108 3.892 16 H 0.102 0.898 17 O -0.562 6.562 18 C 0.121 3.879 19 N -0.739 5.739 20 C -0.247 4.247 21 H 0.076 0.924 22 C -0.076 4.076 23 N -0.967 5.967 24 Si 0.974 3.026 25 H -0.266 1.266 26 H -0.293 1.293 27 H -0.294 1.294 28 C -0.029 4.029 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.176 0.824 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.415 0.585 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.385 0.615 41 H 0.030 0.970 42 H 0.033 0.967 43 H 0.377 0.623 44 H 0.251 0.749 45 H 0.083 0.917 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.760 5.306 7.661 30.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.064 4.064 3 N -0.258 5.258 4 C -0.192 4.192 5 C -0.140 4.140 6 N -0.138 5.138 7 C -0.018 4.018 8 C -0.148 4.148 9 C -0.123 4.123 10 H 0.138 0.862 11 C 0.308 3.692 12 O -0.458 6.458 13 N -0.361 5.361 14 C -0.023 4.023 15 C 0.048 3.952 16 H 0.119 0.881 17 O -0.369 6.369 18 C -0.007 4.007 19 N -0.383 5.383 20 C -0.379 4.379 21 H 0.094 0.906 22 C -0.268 4.268 23 N -0.618 5.618 24 Si 0.803 3.197 25 H -0.190 1.190 26 H -0.220 1.220 27 H -0.221 1.221 28 C -0.067 4.067 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.193 0.807 33 H 0.126 0.874 34 H 0.135 0.865 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.252 0.748 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.233 0.767 41 H 0.048 0.952 42 H 0.051 0.949 43 H 0.210 0.790 44 H 0.060 0.940 45 H 0.101 0.899 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -29.265 5.305 7.655 30.712 hybrid contribution 1.836 -0.774 -0.016 1.993 sum -27.430 4.531 7.639 28.832 Atomic orbital electron populations 1.20322 0.82412 1.05131 1.04519 1.23819 0.97067 0.81020 1.04464 1.70425 1.02853 1.29886 1.22593 1.22122 0.95008 0.92956 1.09107 1.21112 0.86193 0.95091 1.11632 1.45499 1.05837 1.08194 1.54227 1.22269 0.98682 0.75656 1.05196 1.21643 0.92112 1.01159 0.99896 1.21411 0.93786 0.93428 1.03685 0.86166 1.20777 0.83450 0.85576 0.79384 1.90708 1.82058 1.35443 1.37586 1.45858 1.12717 1.31014 1.46559 1.21850 0.86879 0.93272 1.00280 1.22095 0.90498 0.83826 0.98785 0.88057 1.86563 1.84594 1.32232 1.33466 1.21415 0.87754 0.96582 0.94905 1.42414 1.13657 1.26454 1.55734 1.19682 0.93518 1.02432 1.22295 0.90566 1.25591 1.01534 0.99354 1.00342 1.69836 1.30872 1.26175 1.34891 0.85070 0.79315 0.78247 0.77081 1.19004 1.22029 1.22078 1.20175 0.93075 0.89633 1.03830 0.89103 0.89290 0.88472 0.80694 0.87434 0.86504 0.88013 0.91509 0.74830 0.90539 0.90919 0.76654 0.95223 0.94916 0.79045 0.94001 0.89865 0.87341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.24 71.23 0.73 0.15 16 2 C 0.20 3.51 7.94 138.24 1.10 4.61 16 3 N -0.54 -12.90 11.27 -188.77 -2.13 -15.03 16 4 C -0.05 -0.97 11.84 83.30 0.99 0.01 16 5 C -0.03 -0.45 6.57 40.73 0.27 -0.18 16 6 N -0.45 -6.84 3.13 -500.13 -1.57 -8.41 16 7 C 0.10 0.83 6.61 86.48 0.57 1.40 16 8 C -0.11 -1.29 4.65 30.73 0.14 -1.14 16 9 C -0.10 -1.31 2.55 -11.32 -0.03 -1.34 16 10 H 0.12 1.19 8.12 -2.38 -0.02 1.17 16 11 C 0.52 10.02 7.13 87.66 0.62 10.65 16 12 O -0.58 -15.63 15.82 -3.03 -0.05 -15.68 16 13 N -0.71 -12.89 5.41 -463.05 -2.51 -15.40 16 14 C 0.10 2.26 5.31 86.38 0.46 2.72 16 15 C 0.11 2.95 3.09 30.59 0.09 3.04 16 16 H 0.10 2.86 8.14 -2.38 -0.02 2.84 16 17 O -0.56 -16.04 13.03 -148.98 -1.94 -17.98 16 18 C 0.12 4.38 5.92 86.38 0.51 4.89 16 19 N -0.74 -36.46 5.49 -343.46 -1.89 -38.35 16 20 C -0.25 -13.63 9.99 84.03 0.84 -12.79 16 21 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 22 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 23 N -0.97 -59.10 13.06 21.65 0.28 -58.82 16 24 Si 0.97 45.77 29.55 68.60 2.03 47.80 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 26 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 27 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 28 C -0.03 -0.39 5.45 30.03 0.16 -0.22 16 29 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.10 0.35 7.95 -2.39 -0.02 0.33 16 32 H 0.18 3.22 8.06 -2.91 -0.02 3.19 16 33 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 34 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.10 1.19 7.77 -2.38 -0.02 1.17 16 36 H 0.07 0.99 8.11 -2.39 -0.02 0.97 16 37 H 0.41 6.22 8.20 -92.71 -0.76 5.46 16 38 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 39 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.38 9.06 9.05 -74.06 -0.67 8.39 16 41 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.38 20.18 7.54 -92.71 -0.70 19.49 16 44 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 45 H 0.08 1.23 8.11 -2.39 -0.02 1.21 16 46 H 0.11 1.19 7.95 -2.39 -0.02 1.17 16 Total: -1.00 -77.77 381.16 -1.95 -79.73 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: -1.12 Total: 34.19 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 6.93 Total: 7.95 kcal Atomic # 7 Polarization: -128.20 SS G_CDS: -7.80 Total: -136.00 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -1.99 Total: -33.66 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -77.77 -1.95 -79.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699062568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.949 kcal (2) G-P(sol) polarization free energy of solvation -77.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds