Wall clock time and date at job start Fri Apr 10 2020 18:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30521 * 119.70481 * 2 1 4 4 N 1.28273 * 122.98829 * 180.02562 * 3 2 1 5 5 C 1.46500 * 119.03210 * 179.97438 * 4 3 2 6 6 C 1.34683 * 121.93166 * 359.97438 * 4 3 2 7 7 O 1.21907 * 120.46259 * 179.97438 * 6 4 3 8 8 C 1.42319 * 119.07110 * 0.02562 * 6 4 3 9 9 C 1.47413 * 121.30299 * 179.97438 * 8 6 4 10 10 O 1.21603 * 119.99710 * 281.28839 * 9 8 6 11 11 N 1.34771 * 119.99967 * 101.01645 * 9 8 6 12 12 C 1.46504 * 119.99945 * 355.53912 * 11 9 8 13 13 C 1.46497 * 120.00149 * 175.54661 * 11 9 8 14 14 C 1.53001 * 109.47365 * 89.99510 * 13 11 9 15 15 C 1.52997 * 109.46853 * 180.02562 * 14 13 11 16 16 N 1.46508 * 109.46821 * 180.02562 * 15 14 13 17 17 C 1.36940 * 119.99553 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00475 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99352 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00040 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99688 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47016 * 59.99831 * 21 19 17 23 23 H 1.48499 * 109.46867 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46955 * 299.99827 * 21 19 17 25 25 C 1.39325 * 117.39605 * 0.24975 * 8 6 4 26 26 C 1.50698 * 120.98674 * 179.72702 * 25 8 6 27 27 H 1.09002 * 109.47350 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47455 * 120.00264 * 1 2 3 29 29 H 1.09006 * 109.46910 * 239.99977 * 1 2 3 30 30 H 1.09004 * 109.46954 * 270.02076 * 5 4 3 31 31 H 1.09001 * 109.46958 * 30.02064 * 5 4 3 32 32 H 1.09003 * 109.46701 * 150.01916 * 5 4 3 33 33 H 1.09006 * 109.46574 * 84.83479 * 12 11 9 34 34 H 1.08997 * 109.47449 * 204.83135 * 12 11 9 35 35 H 1.08994 * 109.47649 * 324.83773 * 12 11 9 36 36 H 1.09008 * 109.47056 * 209.99984 * 13 11 9 37 37 H 1.08997 * 109.46982 * 329.99303 * 13 11 9 38 38 H 1.08993 * 109.47024 * 300.00168 * 14 13 11 39 39 H 1.09004 * 109.46927 * 60.00540 * 14 13 11 40 40 H 1.09001 * 109.47635 * 299.99795 * 15 14 13 41 41 H 1.09004 * 109.47532 * 60.00211 * 15 14 13 42 42 H 0.96992 * 120.00074 * 0.02562 * 16 15 14 43 43 H 0.96997 * 119.99686 * 179.97438 * 20 19 17 44 44 H 1.09013 * 109.46857 * 87.62684 * 26 25 8 45 45 H 1.08995 * 109.47159 * 207.62529 * 26 25 8 46 46 H 1.08994 * 109.47538 * 327.62886 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1537 1.1337 0.0000 4 7 3.4343 1.2072 -0.0005 5 6 4.0707 2.5267 -0.0010 6 6 4.2110 0.1068 -0.0005 7 8 5.4258 0.2078 -0.0014 8 6 3.5935 -1.1754 -0.0006 9 6 4.3960 -2.4120 -0.0012 10 8 4.8995 -2.8095 -1.0342 11 7 4.5762 -3.0989 1.1443 12 6 4.0579 -2.5666 2.4069 13 6 5.2905 -4.3778 1.1268 14 6 6.7852 -4.1302 1.3401 15 6 7.5311 -5.4659 1.3212 16 7 8.9623 -5.2288 1.5260 17 6 9.8349 -6.2840 1.5471 18 1 9.4681 -7.2909 1.4131 19 6 11.1910 -6.0593 1.7406 20 7 11.6381 -4.8321 1.9034 21 14 12.3815 -7.4985 1.7686 22 1 12.3186 -8.2182 0.4712 23 1 13.7612 -6.9954 1.9887 24 1 12.0110 -8.4260 2.8676 25 6 2.2008 -1.2164 -0.0060 26 6 1.4633 -2.5305 -0.0126 27 1 -0.3634 1.0277 0.0005 28 1 -0.3634 -0.5139 -0.8899 29 1 -0.3633 -0.5139 0.8900 30 1 4.2279 2.8539 -1.0288 31 1 3.4273 3.2406 0.5132 32 1 5.0305 2.4673 0.5122 33 1 3.0120 -2.8523 2.5196 34 1 4.6366 -2.9718 3.2369 35 1 4.1393 -1.4797 2.4037 36 1 4.9106 -5.0171 1.9239 37 1 5.1368 -4.8667 0.1648 38 1 7.1649 -3.4911 0.5431 39 1 6.9388 -3.6414 2.3022 40 1 7.1515 -6.1055 2.1180 41 1 7.3775 -5.9544 0.3589 42 1 9.2917 -4.3246 1.6467 43 1 12.5856 -4.6752 2.0390 44 1 1.3187 -2.8711 1.0128 45 1 0.4933 -2.4003 -0.4924 46 1 2.0443 -3.2706 -0.5627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699526296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:37 Heat of formation + Delta-G solvation = 9.160015 kcal Electronic energy + Delta-G solvation = -27474.753720 eV Core-core repulsion = 23594.641997 eV Total energy + Delta-G solvation = -3880.111723 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.46810 -39.86349 -38.29625 -36.39470 -36.04282 -34.74999 -32.95149 -32.03082 -30.99034 -29.73674 -28.56158 -27.07331 -26.76365 -25.78567 -24.20360 -22.66939 -22.56472 -20.89031 -19.95149 -18.79878 -17.81064 -17.20536 -16.96314 -16.73906 -16.27216 -16.01857 -15.11091 -14.62520 -14.60148 -14.42733 -14.29861 -13.84970 -13.75854 -13.61810 -13.41624 -13.23326 -13.12408 -12.97970 -12.93632 -12.81896 -12.57789 -12.50802 -12.40841 -11.90682 -11.84207 -11.57793 -10.86555 -10.78136 -10.71206 -10.42753 -10.32345 -10.20405 -10.04493 -9.81359 -9.63752 -8.78375 -8.73071 -8.70329 -6.83063 -5.67250 -2.96096 -0.08032 1.21418 1.75408 2.46157 2.76712 3.02851 3.49993 3.53504 3.55355 3.64631 3.95600 4.04443 4.25728 4.65632 4.67089 4.79855 4.86531 4.90336 4.93636 4.94256 5.03320 5.08247 5.15586 5.21639 5.26026 5.30730 5.38714 5.42095 5.46905 5.52845 5.55786 5.64445 5.73509 5.78699 5.96810 6.13931 6.37290 6.47542 6.54078 6.95128 6.97760 7.22707 7.30335 7.76653 7.76868 8.03066 8.51512 9.61923 10.21547 10.56163 11.55812 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022624 B = 0.002507 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.337058 B =11165.751912 C =11969.292430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.058 3.942 3 N -0.212 5.212 4 N -0.344 5.344 5 C 0.080 3.920 6 C 0.494 3.506 7 O -0.508 6.508 8 C -0.200 4.200 9 C 0.585 3.415 10 O -0.512 6.512 11 N -0.604 5.604 12 C 0.081 3.919 13 C 0.121 3.879 14 C -0.141 4.141 15 C 0.158 3.842 16 N -0.734 5.734 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.934 5.934 21 Si 0.909 3.091 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.002 3.998 26 C -0.128 4.128 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.018 0.982 41 H 0.020 0.980 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.132 13.462 -0.372 33.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 N -0.037 5.037 4 N -0.165 5.165 5 C -0.059 4.059 6 C 0.291 3.709 7 O -0.383 6.383 8 C -0.215 4.215 9 C 0.370 3.630 10 O -0.386 6.386 11 N -0.337 5.337 12 C -0.062 4.062 13 C -0.001 4.001 14 C -0.180 4.180 15 C 0.030 3.970 16 N -0.378 5.378 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.583 5.583 21 Si 0.740 3.260 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.004 4.004 26 C -0.185 4.185 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.036 0.964 41 H 0.038 0.962 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.111 0.889 45 H 0.107 0.893 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -30.084 14.093 -0.930 33.234 hybrid contribution 1.215 -1.021 0.119 1.591 sum -28.869 13.072 -0.811 31.701 Atomic orbital electron populations 1.20567 0.85878 1.04537 1.03467 1.21614 0.97973 0.86568 1.05113 1.70622 0.95229 1.28857 1.09023 1.46592 1.01914 1.09978 1.58021 1.22201 0.99408 0.79669 1.04658 1.17629 0.88171 0.84532 0.80579 1.91044 1.11859 1.85643 1.49778 1.21456 0.93995 0.94754 1.11318 1.17294 0.79593 0.82157 0.83935 1.90861 1.47517 1.68188 1.32035 1.47784 1.56163 1.22783 1.06933 1.21763 0.99005 0.99293 0.86149 1.21567 0.92189 0.82968 1.03374 1.22072 0.93587 0.99912 1.02442 1.20532 0.85777 0.93192 0.97538 1.42362 1.00690 1.07348 1.87365 1.19204 0.88288 0.88103 1.41399 0.91204 1.24769 0.96984 0.96448 1.03019 1.69665 1.13810 1.18430 1.56386 0.86240 0.80423 0.81580 0.77787 1.21266 1.21708 1.21297 1.21422 0.92032 0.97380 0.89594 1.21046 1.00914 0.92419 1.04111 0.89936 0.89803 0.89752 0.89938 0.88537 0.88005 0.92513 0.89879 0.92172 0.90068 0.89644 0.91294 0.91956 0.96442 0.96228 0.78260 0.93496 0.88852 0.89297 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.27 9.00 36.00 0.32 0.06 16 2 C 0.06 0.42 6.87 -82.48 -0.57 -0.14 16 3 N -0.21 -1.92 10.74 33.65 0.36 -1.56 16 4 N -0.34 -3.76 3.62 -69.82 -0.25 -4.01 16 5 C 0.08 0.62 10.58 59.85 0.63 1.25 16 6 C 0.49 7.20 7.50 -14.73 -0.11 7.09 16 7 O -0.51 -9.45 16.18 5.00 0.08 -9.37 16 8 C -0.20 -2.63 3.96 -104.19 -0.41 -3.05 16 9 C 0.59 9.27 5.50 -12.53 -0.07 9.21 16 10 O -0.51 -10.32 16.73 5.27 0.09 -10.23 16 11 N -0.60 -8.12 2.87 -182.86 -0.53 -8.65 16 12 C 0.08 0.78 10.09 59.85 0.60 1.38 16 13 C 0.12 1.74 5.35 -4.04 -0.02 1.72 16 14 C -0.14 -2.64 5.65 -26.73 -0.15 -2.79 16 15 C 0.16 3.45 6.26 -4.04 -0.03 3.42 16 16 N -0.73 -20.31 5.60 -59.90 -0.34 -20.65 16 17 C -0.24 -7.12 9.99 -15.06 -0.15 -7.27 16 18 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 19 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 20 N -0.93 -29.93 13.06 55.49 0.72 -29.20 16 21 Si 0.91 23.41 29.55 -169.99 -5.02 18.38 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 C 0.00 0.02 5.96 -103.54 -0.62 -0.60 16 26 C -0.13 -0.73 9.32 36.00 0.34 -0.39 16 27 H 0.08 0.23 8.11 -51.93 -0.42 -0.19 16 28 H 0.08 0.16 7.56 -51.93 -0.39 -0.24 16 29 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.10 0.86 7.36 -51.93 -0.38 0.48 16 33 H 0.06 0.37 7.64 -51.93 -0.40 -0.03 16 34 H 0.08 0.74 8.03 -51.93 -0.42 0.33 16 35 H 0.06 0.61 7.20 -51.93 -0.37 0.24 16 36 H 0.08 0.93 8.07 -51.92 -0.42 0.51 16 37 H 0.09 1.30 7.49 -51.93 -0.39 0.91 16 38 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.38 11.27 7.67 -40.82 -0.31 10.95 16 43 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 44 H 0.09 0.37 7.64 -51.92 -0.40 -0.03 16 45 H 0.09 0.27 6.71 -51.93 -0.35 -0.08 16 46 H 0.08 0.64 7.32 -51.93 -0.38 0.26 16 LS Contribution 385.13 15.07 5.80 5.80 Total: -1.00 -40.49 385.13 -6.54 -47.03 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.13 Total: 3.15 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -0.32 Total: 9.30 kcal Atomic # 7 Polarization: -64.04 SS G_CDS: -0.03 Total: -64.07 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: 0.17 Total: -19.60 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -5.02 Total: 18.38 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -40.49 -6.54 -47.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699526296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.188 kcal (2) G-P(sol) polarization free energy of solvation -40.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds