Wall clock time and date at job start Fri Apr 10 2020 18:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30521 * 119.70481 * 2 1 4 4 N 1.28273 * 122.98829 * 180.02562 * 3 2 1 5 5 C 1.46500 * 119.03210 * 179.97438 * 4 3 2 6 6 C 1.34683 * 121.93166 * 359.97438 * 4 3 2 7 7 O 1.21907 * 120.46259 * 179.97438 * 6 4 3 8 8 C 1.42319 * 119.07110 * 0.02562 * 6 4 3 9 9 C 1.47413 * 121.30299 * 179.97438 * 8 6 4 10 10 O 1.21603 * 119.99710 * 281.28839 * 9 8 6 11 11 N 1.34771 * 119.99967 * 101.01645 * 9 8 6 12 12 C 1.46504 * 119.99945 * 355.53912 * 11 9 8 13 13 C 1.46497 * 120.00149 * 175.54661 * 11 9 8 14 14 C 1.53001 * 109.47365 * 89.99510 * 13 11 9 15 15 C 1.52997 * 109.46853 * 180.02562 * 14 13 11 16 16 N 1.46508 * 109.46821 * 180.02562 * 15 14 13 17 17 C 1.36940 * 119.99553 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00475 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99352 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00040 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99688 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47016 * 59.99831 * 21 19 17 23 23 H 1.48499 * 109.46867 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46955 * 299.99827 * 21 19 17 25 25 C 1.39325 * 117.39605 * 0.24975 * 8 6 4 26 26 C 1.50698 * 120.98674 * 179.72702 * 25 8 6 27 27 H 1.09002 * 109.47350 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47455 * 120.00264 * 1 2 3 29 29 H 1.09006 * 109.46910 * 239.99977 * 1 2 3 30 30 H 1.09004 * 109.46954 * 270.02076 * 5 4 3 31 31 H 1.09001 * 109.46958 * 30.02064 * 5 4 3 32 32 H 1.09003 * 109.46701 * 150.01916 * 5 4 3 33 33 H 1.09006 * 109.46574 * 84.83479 * 12 11 9 34 34 H 1.08997 * 109.47449 * 204.83135 * 12 11 9 35 35 H 1.08994 * 109.47649 * 324.83773 * 12 11 9 36 36 H 1.09008 * 109.47056 * 209.99984 * 13 11 9 37 37 H 1.08997 * 109.46982 * 329.99303 * 13 11 9 38 38 H 1.08993 * 109.47024 * 300.00168 * 14 13 11 39 39 H 1.09004 * 109.46927 * 60.00540 * 14 13 11 40 40 H 1.09001 * 109.47635 * 299.99795 * 15 14 13 41 41 H 1.09004 * 109.47532 * 60.00211 * 15 14 13 42 42 H 0.96992 * 120.00074 * 0.02562 * 16 15 14 43 43 H 0.96997 * 119.99686 * 179.97438 * 20 19 17 44 44 H 1.09013 * 109.46857 * 87.62684 * 26 25 8 45 45 H 1.08995 * 109.47159 * 207.62529 * 26 25 8 46 46 H 1.08994 * 109.47538 * 327.62886 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1537 1.1337 0.0000 4 7 3.4343 1.2072 -0.0005 5 6 4.0707 2.5267 -0.0010 6 6 4.2110 0.1068 -0.0005 7 8 5.4258 0.2078 -0.0014 8 6 3.5935 -1.1754 -0.0006 9 6 4.3960 -2.4120 -0.0012 10 8 4.8995 -2.8095 -1.0342 11 7 4.5762 -3.0989 1.1443 12 6 4.0579 -2.5666 2.4069 13 6 5.2905 -4.3778 1.1268 14 6 6.7852 -4.1302 1.3401 15 6 7.5311 -5.4659 1.3212 16 7 8.9623 -5.2288 1.5260 17 6 9.8349 -6.2840 1.5471 18 1 9.4681 -7.2909 1.4131 19 6 11.1910 -6.0593 1.7406 20 7 11.6381 -4.8321 1.9034 21 14 12.3815 -7.4985 1.7686 22 1 12.3186 -8.2182 0.4712 23 1 13.7612 -6.9954 1.9887 24 1 12.0110 -8.4260 2.8676 25 6 2.2008 -1.2164 -0.0060 26 6 1.4633 -2.5305 -0.0126 27 1 -0.3634 1.0277 0.0005 28 1 -0.3634 -0.5139 -0.8899 29 1 -0.3633 -0.5139 0.8900 30 1 4.2279 2.8539 -1.0288 31 1 3.4273 3.2406 0.5132 32 1 5.0305 2.4673 0.5122 33 1 3.0120 -2.8523 2.5196 34 1 4.6366 -2.9718 3.2369 35 1 4.1393 -1.4797 2.4037 36 1 4.9106 -5.0171 1.9239 37 1 5.1368 -4.8667 0.1648 38 1 7.1649 -3.4911 0.5431 39 1 6.9388 -3.6414 2.3022 40 1 7.1515 -6.1055 2.1180 41 1 7.3775 -5.9544 0.3589 42 1 9.2917 -4.3246 1.6467 43 1 12.5856 -4.6752 2.0390 44 1 1.3187 -2.8711 1.0128 45 1 0.4933 -2.4003 -0.4924 46 1 2.0443 -3.2706 -0.5627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699526296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:36 Heat of formation + Delta-G solvation = -22.014226 kcal Electronic energy + Delta-G solvation = -27476.105537 eV Core-core repulsion = 23594.641997 eV Total energy + Delta-G solvation = -3881.463540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.31033 -40.98873 -39.26214 -37.65688 -37.04884 -36.46027 -34.23539 -33.45928 -31.78747 -31.38102 -29.14098 -28.09259 -27.77343 -26.88951 -25.57199 -24.19693 -23.38402 -22.58447 -20.98601 -19.68159 -19.17606 -18.74713 -18.10206 -17.68156 -17.40383 -16.98264 -16.58831 -16.18965 -15.99540 -15.37389 -15.23354 -15.12834 -14.89944 -14.64566 -14.61837 -14.29088 -13.96955 -13.80728 -13.68107 -13.62654 -13.51753 -13.40818 -13.23047 -12.90245 -12.81248 -12.77951 -12.74322 -12.49614 -12.37046 -12.12764 -11.89758 -11.84103 -11.53095 -10.97592 -10.96450 -10.82775 -9.85206 -9.61939 -9.07002 -7.98454 -5.29833 -0.88865 0.40462 0.88659 1.42141 1.43921 1.49386 1.55389 1.80406 2.12075 2.53758 2.88156 3.15006 3.33474 3.34503 3.63050 3.80377 3.87241 4.06194 4.09117 4.23911 4.25866 4.28117 4.31880 4.43104 4.44418 4.52369 4.57521 4.61406 4.64131 4.68749 4.75405 4.77442 4.81492 4.84611 4.95343 5.06100 5.11274 5.22539 5.24165 5.42331 5.44345 5.44496 6.14403 6.22552 6.35900 6.89717 6.98281 7.27245 8.02245 8.26077 9.25675 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022624 B = 0.002507 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.337058 B =11165.751912 C =11969.292430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.067 3.933 3 N -0.217 5.217 4 N -0.343 5.343 5 C 0.075 3.925 6 C 0.481 3.519 7 O -0.576 6.576 8 C -0.247 4.247 9 C 0.583 3.417 10 O -0.574 6.574 11 N -0.599 5.599 12 C 0.075 3.925 13 C 0.129 3.871 14 C -0.126 4.126 15 C 0.158 3.842 16 N -0.753 5.753 17 C -0.250 4.250 18 H 0.082 0.918 19 C -0.083 4.083 20 N -0.976 5.976 21 Si 0.984 3.016 22 H -0.277 1.277 23 H -0.295 1.295 24 H -0.270 1.270 25 C 0.039 3.961 26 C -0.132 4.132 27 H 0.089 0.911 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.125 0.875 37 H 0.075 0.925 38 H 0.024 0.976 39 H 0.062 0.938 40 H 0.042 0.958 41 H 0.016 0.984 42 H 0.369 0.631 43 H 0.252 0.748 44 H 0.124 0.876 45 H 0.127 0.873 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.493 12.339 0.896 37.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 N -0.041 5.041 4 N -0.162 5.162 5 C -0.064 4.064 6 C 0.281 3.719 7 O -0.458 6.458 8 C -0.262 4.262 9 C 0.370 3.630 10 O -0.453 6.453 11 N -0.330 5.330 12 C -0.066 4.066 13 C 0.007 3.993 14 C -0.165 4.165 15 C 0.031 3.969 16 N -0.395 5.395 17 C -0.382 4.382 18 H 0.099 0.901 19 C -0.275 4.275 20 N -0.626 5.626 21 Si 0.811 3.189 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.196 1.196 25 C 0.032 3.968 26 C -0.188 4.188 27 H 0.108 0.892 28 H 0.124 0.876 29 H 0.132 0.868 30 H 0.108 0.892 31 H 0.147 0.853 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.143 0.857 37 H 0.093 0.907 38 H 0.043 0.957 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.034 0.966 42 H 0.200 0.800 43 H 0.061 0.939 44 H 0.142 0.858 45 H 0.146 0.854 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -34.554 12.978 0.375 36.913 hybrid contribution 2.323 -0.631 -0.271 2.422 sum -32.232 12.348 0.104 34.516 Atomic orbital electron populations 1.20863 0.81879 1.05936 1.05849 1.22525 1.00091 0.85379 1.02243 1.70798 0.93899 1.29668 1.09760 1.46702 1.02491 1.09897 1.57105 1.22407 0.99474 0.79057 1.05457 1.17959 0.87718 0.85948 0.80321 1.90990 1.14354 1.86628 1.53779 1.21184 0.95640 0.92959 1.16411 1.17764 0.79050 0.82647 0.83567 1.90804 1.50228 1.69943 1.34293 1.47869 1.55147 1.22206 1.07799 1.22053 1.01521 0.98775 0.84268 1.21471 0.89293 0.84127 1.04456 1.21900 0.96448 0.97443 1.00715 1.20702 0.83272 0.95076 0.97853 1.42665 1.02986 1.06308 1.87534 1.19693 0.89054 0.89033 1.40383 0.90051 1.25760 0.99003 0.99403 1.03293 1.69859 1.13862 1.20912 1.57984 0.85065 0.77324 0.78125 0.78358 1.20327 1.22085 1.19588 1.21910 0.90246 0.99654 0.84993 1.21293 1.01705 0.89769 1.06010 0.89224 0.87621 0.86799 0.89204 0.85297 0.89537 0.88171 0.88950 0.93170 0.85697 0.90684 0.95703 0.91886 0.93977 0.96554 0.79984 0.93939 0.85775 0.85449 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.07 9.00 71.23 0.64 0.57 16 2 C 0.07 0.77 6.87 43.19 0.30 1.07 16 3 N -0.22 -3.52 10.74 -47.44 -0.51 -4.03 16 4 N -0.34 -7.60 3.62 -492.99 -1.78 -9.39 16 5 C 0.07 1.20 10.58 127.77 1.35 2.56 16 6 C 0.48 14.98 7.50 85.27 0.64 15.62 16 7 O -0.58 -23.85 16.18 -5.01 -0.08 -23.93 16 8 C -0.25 -6.66 3.96 -19.58 -0.08 -6.74 16 9 C 0.58 19.37 5.50 86.66 0.48 19.85 16 10 O -0.57 -25.05 16.73 -4.04 -0.07 -25.12 16 11 N -0.60 -16.05 2.87 -850.69 -2.44 -18.50 16 12 C 0.08 1.31 10.09 127.77 1.29 2.60 16 13 C 0.13 3.67 5.35 86.38 0.46 4.13 16 14 C -0.13 -4.89 5.65 30.59 0.17 -4.71 16 15 C 0.16 6.97 6.26 86.38 0.54 7.51 16 16 N -0.75 -42.86 5.60 -343.43 -1.92 -44.78 16 17 C -0.25 -15.06 9.99 84.03 0.84 -14.22 16 18 H 0.08 4.60 7.83 -2.91 -0.02 4.57 16 19 C -0.08 -5.09 5.50 84.86 0.47 -4.63 16 20 N -0.98 -64.29 13.06 21.65 0.28 -64.01 16 21 Si 0.98 48.53 29.55 68.60 2.03 50.56 16 22 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 24 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 25 C 0.04 0.60 5.96 -19.17 -0.11 0.48 16 26 C -0.13 -0.95 9.32 71.24 0.66 -0.29 16 27 H 0.09 0.05 8.11 -2.39 -0.02 0.03 16 28 H 0.11 -0.25 7.56 -2.39 -0.02 -0.27 16 29 H 0.11 -0.45 8.14 -2.38 -0.02 -0.47 16 30 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.09 1.66 7.36 -2.39 -0.02 1.65 16 33 H 0.10 0.87 7.64 -2.38 -0.02 0.85 16 34 H 0.09 1.45 8.03 -2.39 -0.02 1.43 16 35 H 0.05 1.00 7.20 -2.39 -0.02 0.98 16 36 H 0.13 2.48 8.07 -2.38 -0.02 2.46 16 37 H 0.07 2.32 7.49 -2.39 -0.02 2.30 16 38 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 40 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.37 22.75 7.67 -92.71 -0.71 22.04 16 43 H 0.25 15.98 8.31 -92.71 -0.77 15.21 16 44 H 0.12 0.26 7.64 -2.38 -0.02 0.24 16 45 H 0.13 0.00 6.71 -2.39 -0.02 -0.01 16 46 H 0.06 0.81 7.32 -2.39 -0.02 0.79 16 Total: -1.00 -96.92 385.13 3.43 -93.49 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.28 Total: 21.91 kcal Atomic # 6 Polarization: 16.15 SS G_CDS: 7.65 Total: 23.79 kcal Atomic # 7 Polarization: -134.32 SS G_CDS: -6.38 Total: -140.70 kcal Atomic # 8 Polarization: -48.90 SS G_CDS: -0.15 Total: -49.05 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.03 Total: 50.56 kcal Total: -96.92 3.43 -93.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699526296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.475 kcal (2) G-P(sol) polarization free energy of solvation -96.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds