Wall clock time and date at job start Fri Apr 10 2020 18:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.33217 * 126.01882 * 2 1 4 4 C 1.31534 * 109.76260 * 179.97438 * 3 2 1 5 5 O 1.35207 * 125.49340 * 179.97438 * 4 3 2 6 6 N 1.34941 * 109.01540 * 0.23952 * 4 3 2 7 7 H 0.97001 * 126.54779 * 179.72734 * 6 4 3 8 8 C 1.36718 * 126.01846 * 179.97438 * 2 1 3 9 9 C 1.46382 * 126.82587 * 0.03215 * 8 2 1 10 10 O 1.21741 * 119.99727 * 33.91191 * 9 8 2 11 11 N 1.34773 * 120.00139 * 213.90607 * 9 8 2 12 12 C 1.46922 * 120.63078 * 5.40365 * 11 9 8 13 13 C 1.53619 * 108.54298 * 126.36877 * 12 11 9 14 14 C 1.53039 * 109.24472 * 54.85834 * 13 12 11 15 15 C 1.53047 * 109.53504 * 298.51207 * 14 13 12 16 16 H 1.09000 * 109.51818 * 301.39434 * 15 14 13 17 17 C 1.53001 * 109.49870 * 181.31828 * 15 14 13 18 18 N 1.46491 * 109.47143 * 175.15911 * 17 15 14 19 19 C 1.46506 * 119.99914 * 89.99648 * 18 17 15 20 20 C 1.36938 * 120.00214 * 269.99887 * 18 17 15 21 21 H 1.07998 * 120.00265 * 144.02231 * 20 18 17 22 22 C 1.38816 * 119.99658 * 324.01959 * 20 18 17 23 23 N 1.31615 * 119.99557 * 157.48700 * 22 20 18 24 24 Si 1.86801 * 120.00104 * 337.48053 * 22 20 18 25 25 H 1.48502 * 109.46718 * 95.31132 * 24 22 20 26 26 H 1.48492 * 109.47052 * 215.30685 * 24 22 20 27 27 H 1.48495 * 109.47391 * 335.31462 * 24 22 20 28 28 C 1.46929 * 120.62910 * 185.68069 * 11 9 8 29 29 H 1.08998 * 109.46913 * 90.01979 * 1 2 3 30 30 H 1.08998 * 109.46855 * 210.02523 * 1 2 3 31 31 H 1.09000 * 109.46861 * 330.02573 * 1 2 3 32 32 H 0.96704 * 114.00226 * 90.02643 * 5 4 3 33 33 H 1.09003 * 109.58844 * 246.20107 * 12 11 9 34 34 H 1.09000 * 109.58790 * 6.62262 * 12 11 9 35 35 H 1.08999 * 109.63544 * 294.86058 * 13 12 11 36 36 H 1.09002 * 109.46111 * 174.74019 * 13 12 11 37 37 H 1.09001 * 109.46444 * 178.49353 * 14 13 12 38 38 H 1.08999 * 109.45126 * 58.52308 * 14 13 12 39 39 H 1.08998 * 109.46561 * 295.16133 * 17 15 14 40 40 H 1.09003 * 109.47394 * 55.15557 * 17 15 14 41 41 H 1.09006 * 109.46778 * 95.40150 * 19 18 17 42 42 H 1.08996 * 109.46948 * 215.39302 * 19 18 17 43 43 H 1.08993 * 109.47209 * 335.39881 * 19 18 17 44 44 H 0.97003 * 119.99598 * 180.02562 * 23 22 20 45 45 H 1.09001 * 109.58810 * 353.37528 * 28 11 9 46 46 H 1.09007 * 109.58150 * 113.65739 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2905 1.0775 0.0000 4 6 3.5532 0.7093 0.0006 5 8 4.6150 1.5464 0.0002 6 7 3.6182 -0.6386 -0.0044 7 1 4.4243 -1.1780 -0.0089 8 6 2.3110 -1.1058 0.0005 9 6 1.8793 -2.5045 0.0005 10 8 0.8639 -2.8281 -0.5882 11 7 2.6058 -3.4341 0.6520 12 6 3.7662 -3.0433 1.4640 13 6 3.5945 -3.6273 2.8744 14 6 3.3802 -5.1392 2.7717 15 6 2.1045 -5.4223 1.9749 16 1 1.2552 -4.9480 2.4666 17 6 1.8733 -6.9329 1.9008 18 7 0.5939 -7.1992 1.2390 19 6 0.5426 -7.3672 -0.2155 20 6 -0.5542 -7.2910 1.9797 21 1 -1.4855 -6.9168 1.5811 22 6 -0.5209 -7.8653 3.2431 23 7 -1.4570 -7.5765 4.1220 24 14 0.8524 -9.0480 3.6956 25 1 1.9311 -8.3082 4.3987 26 1 0.3183 -10.1092 4.5864 27 1 1.3997 -9.6666 2.4615 28 6 2.2560 -4.8581 0.5588 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5134 32 1 4.9240 1.7902 0.8836 33 1 4.6773 -3.4352 1.0117 34 1 3.8227 -1.9563 1.5214 35 1 2.7315 -3.1695 3.3578 36 1 4.4900 -3.4260 3.4623 37 1 3.2846 -5.5612 3.7721 38 1 4.2324 -5.5930 2.2660 39 1 2.6798 -7.3963 1.3326 40 1 1.8543 -7.3475 2.9087 41 1 0.5862 -8.4285 -0.4604 42 1 -0.3865 -6.9442 -0.5975 43 1 1.3896 -6.8541 -0.6707 44 1 -1.4335 -7.9775 5.0050 45 1 1.3156 -4.9688 0.0188 46 1 3.0453 -5.3944 0.0320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752508337.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:56 Heat of formation + Delta-G solvation = 20.281687 kcal Electronic energy + Delta-G solvation = -28620.715617 eV Core-core repulsion = 24741.086165 eV Total energy + Delta-G solvation = -3879.629452 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.59701 -39.93541 -37.96636 -37.47716 -35.84717 -33.81146 -32.71655 -31.82001 -31.11693 -30.59026 -27.69614 -26.76223 -25.60938 -25.14248 -22.85453 -22.57264 -21.59781 -20.85664 -20.10454 -19.81074 -18.77614 -17.61636 -16.96057 -16.62255 -16.23554 -15.67014 -15.35388 -15.25582 -14.56162 -14.36669 -14.17085 -13.88072 -13.59012 -13.33543 -13.19900 -13.03479 -12.89479 -12.74733 -12.65264 -12.37464 -12.10492 -12.06129 -11.86430 -11.50832 -11.16548 -10.87839 -10.80991 -10.72065 -10.54615 -10.30193 -10.22083 -10.08334 -10.00121 -9.79216 -9.51532 -8.74673 -8.54559 -8.44463 -6.83135 -5.98159 -3.37607 1.00533 2.11448 2.37231 2.81006 3.16526 3.25871 3.44677 3.49499 3.55995 4.33405 4.51008 4.55010 4.64970 4.81067 4.86594 4.89302 5.06042 5.23079 5.31719 5.36165 5.41085 5.42208 5.59422 5.73859 5.77854 5.80086 5.85287 5.92821 5.98381 6.07118 6.13356 6.21508 6.24691 6.26089 6.36604 6.39620 6.53886 6.63531 6.72982 6.75914 6.96796 7.19427 7.31938 7.55237 8.05424 8.08799 8.39213 8.99368 9.72217 10.11683 11.17827 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019915 B = 0.003552 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.626681 B = 7881.590504 C = 8363.824735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.105 3.895 3 N -0.485 5.485 4 C 0.401 3.599 5 O -0.442 6.442 6 N -0.556 5.556 7 H 0.423 0.577 8 C -0.070 4.070 9 C 0.592 3.408 10 O -0.510 6.510 11 N -0.606 5.606 12 C 0.097 3.903 13 C -0.130 4.130 14 C -0.117 4.117 15 C -0.119 4.119 16 H 0.086 0.914 17 C 0.146 3.854 18 N -0.612 5.612 19 C 0.122 3.878 20 C -0.264 4.264 21 H 0.080 0.920 22 C 0.034 3.966 23 N -0.900 5.900 24 Si 0.878 3.122 25 H -0.287 1.287 26 H -0.302 1.302 27 H -0.271 1.271 28 C 0.124 3.876 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.406 0.594 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.039 0.961 40 H 0.057 0.943 41 H 0.008 0.992 42 H 0.041 0.959 43 H 0.032 0.968 44 H 0.262 0.738 45 H 0.106 0.894 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.044 14.054 -4.795 21.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.029 4.029 3 N -0.216 5.216 4 C 0.100 3.900 5 O -0.243 6.243 6 N -0.176 5.176 7 H 0.264 0.736 8 C -0.185 4.185 9 C 0.378 3.622 10 O -0.384 6.384 11 N -0.339 5.339 12 C -0.026 4.026 13 C -0.169 4.169 14 C -0.155 4.155 15 C -0.141 4.141 16 H 0.104 0.896 17 C 0.019 3.981 18 N -0.335 5.335 19 C -0.023 4.023 20 C -0.393 4.393 21 H 0.098 0.902 22 C -0.167 4.167 23 N -0.542 5.542 24 Si 0.708 3.292 25 H -0.215 1.215 26 H -0.231 1.231 27 H -0.196 1.196 28 C 0.003 3.997 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.264 0.736 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.026 0.974 42 H 0.059 0.941 43 H 0.051 0.949 44 H 0.072 0.928 45 H 0.124 0.876 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.138 14.662 -5.611 21.808 hybrid contribution 1.953 -1.597 1.045 2.731 sum 17.091 13.064 -4.566 21.991 Atomic orbital electron populations 1.20247 0.85872 1.03518 1.03590 1.20899 0.96863 0.85802 0.99330 1.70254 0.98554 1.30360 1.22425 1.20159 0.87414 0.78744 1.03699 1.84835 1.43363 1.61651 1.34450 1.44034 1.08766 1.07797 1.57035 0.73601 1.20844 0.82882 0.95470 1.19272 1.16762 0.83621 0.82276 0.79524 1.90904 1.23732 1.79686 1.44114 1.48136 1.29619 1.08054 1.48095 1.22032 0.88468 0.99700 0.92421 1.21944 1.02384 0.97314 0.95212 1.21581 0.98239 0.94533 1.01169 1.22163 0.97506 1.00096 0.94346 0.89571 1.21168 0.87955 0.91424 0.97518 1.44054 1.04289 1.82872 1.02309 1.21162 0.99124 0.97379 0.84664 1.18825 0.88264 1.33967 0.98254 0.90228 1.25418 0.96576 0.98031 0.96626 1.69881 1.35808 1.43536 1.04964 0.86940 0.82096 0.82293 0.77821 1.21500 1.23051 1.19592 1.21892 1.02175 0.77158 0.98492 0.90043 0.89878 0.90660 0.73643 0.91347 0.90609 0.91080 0.91082 0.91430 0.92259 0.94295 0.92478 0.97354 0.94055 0.94926 0.92795 0.87570 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 9.80 36.01 0.35 -0.58 16 2 C 0.10 1.42 7.13 -82.54 -0.59 0.83 16 3 N -0.48 -6.37 11.22 -10.83 -0.12 -6.49 16 4 C 0.40 4.14 9.43 -89.60 -0.84 3.29 16 5 O -0.44 -3.20 13.62 -17.32 -0.24 -3.44 16 6 N -0.56 -5.25 4.78 -10.91 -0.05 -5.30 16 7 H 0.42 2.76 7.42 -40.82 -0.30 2.46 16 8 C -0.07 -0.91 6.08 -81.97 -0.50 -1.41 16 9 C 0.59 9.05 7.39 -12.99 -0.10 8.95 16 10 O -0.51 -9.63 15.42 5.15 0.08 -9.55 16 11 N -0.61 -8.29 2.97 -174.15 -0.52 -8.80 16 12 C 0.10 0.95 5.53 -3.49 -0.02 0.93 16 13 C -0.13 -1.42 6.10 -26.39 -0.16 -1.58 16 14 C -0.12 -1.59 5.17 -26.69 -0.14 -1.73 16 15 C -0.12 -2.09 2.55 -90.50 -0.23 -2.32 16 16 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 17 C 0.15 2.98 3.98 -4.05 -0.02 2.97 16 18 N -0.61 -14.32 2.35 -181.12 -0.43 -14.74 16 19 C 0.12 2.44 9.66 59.85 0.58 3.02 16 20 C -0.26 -7.38 9.96 -15.06 -0.15 -7.53 16 21 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 22 C 0.03 0.96 5.31 -17.43 -0.09 0.86 16 23 N -0.90 -27.34 13.97 55.49 0.78 -26.57 16 24 Si 0.88 21.88 24.98 -169.99 -4.25 17.63 16 25 H -0.29 -6.79 6.66 56.52 0.38 -6.42 16 26 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 27 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 28 C 0.12 1.96 4.45 -3.71 -0.02 1.94 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.13 7.48 -51.93 -0.39 0.74 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.41 0.72 9.06 45.56 0.41 1.13 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.63 4.73 -51.93 -0.25 0.38 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 40 H 0.06 1.30 3.06 -51.93 -0.16 1.14 16 41 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 42 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 43 H 0.03 0.55 6.29 -51.93 -0.33 0.23 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.11 2.00 5.35 -51.93 -0.28 1.72 16 46 H 0.06 0.83 8.10 -51.92 -0.42 0.41 16 LS Contribution 359.98 15.07 5.42 5.42 Total: -1.00 -35.18 359.98 -7.17 -42.36 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.93 Total: 1.83 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -1.92 Total: 7.65 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -0.34 Total: -61.91 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.16 Total: -12.99 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.25 Total: 17.63 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.18 -7.17 -42.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752508337.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.637 kcal (2) G-P(sol) polarization free energy of solvation -35.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds