Wall clock time and date at job start Fri Apr 10 2020 18:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34485 * 126.83799 * 2 1 4 4 N 1.36441 * 108.86269 * 180.25644 * 3 2 1 5 5 H 0.96998 * 124.85971 * 179.73315 * 4 3 2 6 6 C 1.34662 * 110.29747 * 359.74601 * 4 3 2 7 7 C 1.36771 * 108.39419 * 0.02562 * 6 4 3 8 8 C 1.47270 * 126.94260 * 179.97438 * 7 6 4 9 9 O 1.21623 * 119.99794 * 180.02562 * 8 7 6 10 10 N 1.34773 * 119.99726 * 0.02562 * 8 7 6 11 11 C 1.46496 * 119.99934 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47355 * 180.02562 * 11 10 8 13 13 H 1.08993 * 109.47392 * 54.99840 * 12 11 10 14 14 C 1.53003 * 109.46945 * 294.99481 * 12 11 10 15 15 C 1.53006 * 109.47452 * 174.99751 * 12 11 10 16 16 N 1.46898 * 109.47138 * 184.99841 * 15 12 11 17 17 C 1.46906 * 110.99888 * 180.02562 * 16 15 12 18 18 C 1.50699 * 109.47140 * 179.97438 * 17 16 15 19 19 O 1.21289 * 119.99678 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99614 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99518 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00466 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00085 * 179.97438 * 21 20 18 24 24 N 1.31416 * 119.99807 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00303 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46922 * 90.00327 * 25 23 21 27 27 H 1.48500 * 109.47032 * 210.00074 * 25 23 21 28 28 H 1.48489 * 109.47076 * 330.00276 * 25 23 21 29 29 H 1.09003 * 109.46904 * 270.14824 * 1 2 3 30 30 H 1.08995 * 109.47028 * 30.14546 * 1 2 3 31 31 H 1.09001 * 109.47137 * 150.14733 * 1 2 3 32 32 H 1.08005 * 125.56601 * 0.03677 * 3 2 1 33 33 H 1.08003 * 125.80689 * 180.02562 * 6 4 3 34 34 H 0.97001 * 120.00253 * 0.02562 * 10 8 7 35 35 H 1.08997 * 109.47613 * 59.99832 * 11 10 8 36 36 H 1.09003 * 109.47151 * 300.00236 * 11 10 8 37 37 H 1.08996 * 109.47132 * 299.99905 * 14 12 11 38 38 H 1.09000 * 109.46878 * 60.00403 * 14 12 11 39 39 H 1.08999 * 109.47096 * 180.02562 * 14 12 11 40 40 H 1.08997 * 109.46770 * 64.99788 * 15 12 11 41 41 H 1.08995 * 109.47019 * 305.00001 * 15 12 11 42 42 H 1.00901 * 111.00121 * 56.04666 * 16 15 12 43 43 H 1.09004 * 109.47040 * 299.99934 * 17 16 15 44 44 H 1.09000 * 109.47033 * 59.99886 * 17 16 15 45 45 H 0.96996 * 120.00269 * 359.97438 * 20 18 17 46 46 H 0.97002 * 120.00022 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6111 0.6553 -0.0058 5 1 4.3841 1.2413 -0.0107 6 6 3.6657 -0.6902 -0.0040 7 6 2.3864 -1.1741 0.0025 8 6 1.9749 -2.5881 0.0060 9 8 0.7937 -2.8776 0.0113 10 7 2.9074 -3.5612 0.0032 11 6 2.4981 -4.9678 0.0061 12 6 3.7406 -5.8606 0.0027 13 1 4.3825 -5.5930 0.8419 14 6 4.5058 -5.6645 -1.3076 15 6 3.3168 -7.3251 0.1315 16 7 4.5113 -8.1720 0.2486 17 6 4.1421 -9.5884 0.3737 18 6 5.3905 -10.4245 0.4907 19 8 6.4804 -9.8926 0.4722 20 7 5.2957 -11.7630 0.6159 21 6 6.4314 -12.5235 0.7229 22 1 7.4019 -12.0501 0.7064 23 6 6.3338 -13.9035 0.8525 24 7 5.1529 -14.4796 0.8731 25 14 7.8813 -14.9399 0.9975 26 1 8.2502 -15.0807 2.4290 27 1 7.6335 -16.2835 0.4157 28 1 8.9900 -14.2792 0.2633 29 1 -0.3633 0.0027 1.0277 30 1 -0.3633 0.8886 -0.5161 31 1 -0.3633 -0.8913 -0.5115 32 1 1.9868 2.1059 0.0006 33 1 4.5665 -1.2861 -0.0071 34 1 3.8495 -3.3303 -0.0007 35 1 1.8997 -5.1740 -0.8813 36 1 1.9066 -5.1723 0.8986 37 1 3.8639 -5.9321 -2.1468 38 1 4.8078 -4.6212 -1.3993 39 1 5.3908 -6.3008 -1.3102 40 1 2.7488 -7.6179 -0.7516 41 1 2.6964 -7.4471 1.0194 42 1 5.0882 -7.8786 1.0227 43 1 3.5273 -9.7265 1.2631 44 1 3.5802 -9.8967 -0.5079 45 1 4.4241 -12.1883 0.6311 46 1 5.0847 -15.4431 0.9632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753642759.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:11 Heat of formation + Delta-G solvation = -41.273656 kcal Electronic energy + Delta-G solvation = -25631.787100 eV Core-core repulsion = 21749.488409 eV Total energy + Delta-G solvation = -3882.298692 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.53201 -39.36940 -38.32886 -37.07223 -34.81279 -33.84383 -32.73771 -32.40229 -31.18756 -30.14321 -27.37766 -26.85863 -26.63191 -24.86700 -23.45901 -22.46478 -20.70068 -20.22246 -19.52478 -19.07477 -18.66120 -17.85552 -16.53792 -16.25011 -15.87013 -15.60804 -15.37143 -14.83091 -14.62863 -14.43622 -14.28624 -14.06064 -13.84840 -13.56975 -13.56037 -13.22297 -13.05054 -12.92788 -12.62775 -12.54614 -12.34790 -11.88976 -11.69190 -11.65350 -11.50617 -11.12067 -11.00456 -10.96422 -10.82908 -10.38814 -10.20959 -9.97050 -9.49955 -9.24888 -8.90310 -8.65077 -8.44597 -8.03260 -7.94487 -6.40628 -3.81515 1.44013 2.06185 2.79395 3.10876 3.18474 3.27082 3.33097 3.39250 3.92494 4.11345 4.33723 4.44274 4.66350 4.71443 4.76558 4.85440 4.98452 5.07555 5.19134 5.26108 5.28786 5.39833 5.45835 5.53747 5.61880 5.67901 5.71518 5.79780 5.82756 5.91388 5.93364 5.97434 6.01121 6.16764 6.28872 6.34718 6.42711 6.45303 6.53112 7.02230 7.22645 7.43170 7.56092 7.67705 8.07474 8.20905 8.62500 9.18904 9.55725 10.07124 10.77096 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.039970 B = 0.001606 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.358585 B =17435.579288 C =17959.539929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.109 4.109 3 C -0.028 4.028 4 N -0.549 5.549 5 H 0.418 0.582 6 C 0.047 3.953 7 C -0.227 4.227 8 C 0.587 3.413 9 O -0.544 6.544 10 N -0.727 5.727 11 C 0.127 3.873 12 C -0.099 4.099 13 H 0.076 0.924 14 C -0.140 4.140 15 C 0.066 3.934 16 N -0.666 5.666 17 C 0.051 3.949 18 C 0.441 3.559 19 O -0.584 6.584 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.169 0.831 33 H 0.172 0.828 34 H 0.397 0.603 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.043 0.957 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.029 0.971 42 H 0.348 0.652 43 H 0.043 0.957 44 H 0.086 0.914 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.410 29.626 -1.644 30.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C -0.155 4.155 4 N -0.143 5.143 5 H 0.254 0.746 6 C -0.090 4.090 7 C -0.238 4.238 8 C 0.376 3.624 9 O -0.422 6.422 10 N -0.379 5.379 11 C 0.002 3.998 12 C -0.119 4.119 13 H 0.094 0.906 14 C -0.197 4.197 15 C -0.065 4.065 16 N -0.298 5.298 17 C -0.082 4.082 18 C 0.227 3.773 19 O -0.468 6.468 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.205 1.205 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.186 0.814 33 H 0.189 0.811 34 H 0.231 0.769 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.048 0.952 42 H 0.167 0.833 43 H 0.061 0.939 44 H 0.104 0.896 45 H 0.226 0.774 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.395 29.604 -2.321 30.376 hybrid contribution 0.749 -0.572 1.023 1.391 sum -5.646 29.033 -1.298 29.605 Atomic orbital electron populations 1.20198 0.89272 1.02622 1.02007 1.20583 0.95704 0.90335 1.04921 1.21596 0.82416 0.99274 1.12247 1.41493 1.08371 1.06698 1.57781 0.74573 1.21941 0.98540 0.83946 1.04574 1.20405 0.92700 0.92880 1.17820 1.17399 0.85376 0.84002 0.75667 1.90750 1.17234 1.83763 1.50414 1.45838 1.09484 1.06221 1.76386 1.21357 0.96622 0.79318 1.02455 1.21339 0.96086 0.94496 0.99944 0.90610 1.21754 1.01453 1.00609 0.95875 1.21899 0.92357 0.91421 1.00774 1.60038 1.17578 1.01212 1.51011 1.21669 0.96733 0.88790 1.01019 1.19817 0.90071 0.83102 0.84340 1.90513 1.28590 1.72022 1.55725 1.41867 1.09664 1.04776 1.63759 1.19704 0.87836 0.88449 1.46960 0.87933 1.25265 0.98215 0.97117 0.97357 1.69616 1.22897 1.11466 1.50310 0.85852 0.81218 0.78723 0.78457 1.20452 1.20928 1.19426 0.91808 0.92393 0.90266 0.81405 0.81117 0.76904 0.91234 0.91529 0.92764 0.93792 0.90496 0.90713 0.95247 0.83288 0.93868 0.89578 0.77442 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 9.97 36.01 0.36 -0.39 16 2 C -0.11 -1.02 6.35 -102.54 -0.65 -1.67 16 3 C -0.03 -0.17 11.82 -16.83 -0.20 -0.37 16 4 N -0.55 -2.54 5.90 -12.85 -0.08 -2.61 16 5 H 0.42 0.49 8.96 -40.82 -0.37 0.12 16 6 C 0.05 0.29 11.40 -16.84 -0.19 0.10 16 7 C -0.23 -2.22 6.29 -103.35 -0.65 -2.87 16 8 C 0.59 6.95 7.81 -12.59 -0.10 6.85 16 9 O -0.54 -8.38 15.32 5.26 0.08 -8.30 16 10 N -0.73 -6.75 5.27 -61.44 -0.32 -7.08 16 11 C 0.13 1.27 5.06 -4.05 -0.02 1.25 16 12 C -0.10 -0.98 2.57 -90.62 -0.23 -1.21 16 13 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 14 C -0.14 -1.41 8.95 37.16 0.33 -1.08 16 15 C 0.07 0.78 5.07 -3.82 -0.02 0.76 16 16 N -0.67 -10.36 5.58 -115.05 -0.64 -11.01 16 17 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 18 C 0.44 10.40 7.82 -10.99 -0.09 10.32 16 19 O -0.58 -15.78 15.78 5.55 0.09 -15.69 16 20 N -0.56 -14.35 5.29 -10.97 -0.06 -14.41 16 21 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.61 13.05 55.50 0.72 -23.89 16 25 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.88 6.86 -51.93 -0.36 0.53 16 32 H 0.17 0.57 8.06 -52.48 -0.42 0.15 16 33 H 0.17 0.52 7.45 -52.48 -0.39 0.13 16 34 H 0.40 2.66 6.60 -40.82 -0.27 2.39 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.04 0.36 7.18 -51.93 -0.37 -0.01 16 39 H 0.08 0.95 7.75 -51.93 -0.40 0.55 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.35 5.57 8.43 -39.29 -0.33 5.24 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 46 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 387.61 15.07 5.84 5.84 Total: -1.00 -35.52 387.61 -8.09 -43.61 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -6.97 Total: 12.99 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -1.73 Total: 4.49 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -0.38 Total: -58.99 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: 0.17 Total: -23.99 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.52 -8.09 -43.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753642759.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.339 kcal (2) G-P(sol) polarization free energy of solvation -35.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds