Wall clock time and date at job start Fri Apr 10 2020 18:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.45178 * 2 1 4 4 C 1.53045 * 109.46392 * 240.03070 * 2 1 3 5 5 C 1.53186 * 109.31587 * 178.61461 * 4 2 1 6 6 N 1.46928 * 108.77496 * 54.63569 * 5 4 2 7 7 C 1.36939 * 120.62790 * 126.36475 * 6 5 4 8 8 H 1.08002 * 119.99938 * 207.68738 * 7 6 5 9 9 C 1.38817 * 119.99904 * 27.96838 * 7 6 5 10 10 N 1.31617 * 119.99875 * 16.95856 * 9 7 6 11 11 Si 1.86798 * 119.99801 * 196.96197 * 9 7 6 12 12 H 1.48500 * 109.47288 * 59.99321 * 11 9 7 13 13 H 1.48493 * 109.47050 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.46856 * 299.99739 * 11 9 7 15 15 C 1.46921 * 118.73854 * 306.64379 * 6 5 4 16 16 C 1.52765 * 109.00910 * 53.30765 * 15 6 5 17 17 H 1.08999 * 109.38615 * 65.51671 * 16 15 6 18 18 N 1.46503 * 109.56332 * 185.55098 * 16 15 6 19 19 C 1.34773 * 120.00212 * 274.96719 * 18 16 15 20 20 O 1.21703 * 119.99900 * 0.02562 * 19 18 16 21 21 C 1.46658 * 119.99891 * 180.02562 * 19 18 16 22 22 C 1.35137 * 126.38025 * 359.68567 * 21 19 18 23 23 N 1.37017 * 107.88027 * 179.87732 * 22 21 19 24 24 C 1.46501 * 125.65479 * 180.15244 * 23 22 21 25 25 C 1.34620 * 108.69394 * 0.39349 * 23 22 21 26 26 O 1.21726 * 125.72745 * 179.73656 * 25 23 22 27 27 N 1.34761 * 108.54550 * 359.76067 * 25 23 22 28 28 C 1.46500 * 126.18008 * 179.97438 * 27 25 23 29 29 H 1.08994 * 109.47183 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47143 * 299.96919 * 1 2 3 31 31 H 1.08999 * 109.47215 * 59.96615 * 1 2 3 32 32 H 1.09006 * 109.49519 * 58.66387 * 4 2 1 33 33 H 1.08998 * 109.49569 * 298.57267 * 4 2 1 34 34 H 1.09004 * 109.58514 * 294.84829 * 5 4 2 35 35 H 1.08998 * 109.58390 * 174.42319 * 5 4 2 36 36 H 0.97002 * 119.99685 * 180.02562 * 10 9 7 37 37 H 1.09003 * 109.58905 * 173.14327 * 15 6 5 38 38 H 1.09004 * 109.58698 * 293.56726 * 15 6 5 39 39 H 0.97003 * 119.99816 * 94.96406 * 18 16 15 40 40 H 1.08005 * 126.05972 * 0.02790 * 22 21 19 41 41 H 1.08996 * 109.46934 * 180.25829 * 24 23 22 42 42 H 1.09001 * 109.47057 * 300.25998 * 24 23 22 43 43 H 1.08996 * 109.46994 * 60.25831 * 24 23 22 44 44 H 1.09002 * 109.47143 * 269.99235 * 28 27 25 45 45 H 1.08997 * 109.47405 * 29.99730 * 28 27 25 46 46 H 1.09004 * 109.46750 * 150.00157 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6886 -1.2642 6 7 4.0678 -1.2488 0.0001 7 6 4.9757 -2.2741 0.0001 8 1 5.0084 -2.9663 0.8284 9 6 5.8577 -2.4201 -1.0618 10 7 6.0610 -1.4183 -1.8909 11 14 6.7559 -4.0384 -1.3141 12 1 5.7666 -5.1273 -1.5169 13 1 7.6329 -3.9369 -2.5081 14 1 7.5826 -4.3375 -0.1173 15 6 3.5671 -0.6923 1.2643 16 6 2.0398 -0.7207 1.2501 17 1 1.6972 -1.7554 1.2386 18 7 1.5255 -0.0486 2.4460 19 6 1.3970 -0.7321 3.6004 20 8 1.7087 -1.9075 3.6496 21 6 0.8817 -0.0593 4.7974 22 6 0.5046 1.2351 4.8896 23 7 0.0835 1.4601 6.1739 24 6 -0.4128 2.7345 6.6989 25 6 0.2065 0.3173 6.8748 26 8 -0.0755 0.1702 8.0497 27 7 0.6947 -0.6364 6.0573 28 6 0.9787 -2.0263 6.4229 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5134 0.8903 31 1 -0.3633 0.5143 -0.8897 32 1 1.6573 -0.2208 -2.1399 33 1 1.6978 -1.7556 -1.2383 34 1 3.9143 0.3409 -1.3673 35 1 3.9416 -1.2846 -2.0983 36 1 6.6771 -1.5205 -2.6332 37 1 3.9346 -1.2907 2.0980 38 1 3.9097 0.3369 1.3716 39 1 1.2775 0.8884 2.4069 40 1 0.5284 1.9626 4.0917 41 1 -0.6705 2.6181 7.7516 42 1 0.3606 3.4957 6.5962 43 1 -1.2978 3.0379 6.1396 44 1 2.0068 -2.1063 6.7763 45 1 0.2972 -2.3407 7.2133 46 1 0.8436 -2.6662 5.5508 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968684968.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:38 Heat of formation + Delta-G solvation = 6.752947 kcal Electronic energy + Delta-G solvation = -28140.038542 eV Core-core repulsion = 24259.822441 eV Total energy + Delta-G solvation = -3880.216102 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 3.82 seconds Orbital eigenvalues (eV) -42.61852 -39.72384 -37.75132 -36.91101 -35.55660 -34.54103 -33.17456 -31.19024 -30.84853 -29.25638 -28.02119 -27.12869 -26.27553 -24.20012 -23.59450 -22.13463 -21.16938 -20.75724 -20.32478 -19.49874 -17.98917 -16.97121 -16.83122 -16.69007 -15.88613 -15.47038 -15.13793 -14.87987 -14.66044 -14.41044 -14.25620 -13.85779 -13.77531 -13.48156 -13.42923 -13.19459 -13.08763 -12.85085 -12.51215 -12.36227 -12.06635 -11.71669 -11.69238 -11.52903 -11.06468 -10.79970 -10.76543 -10.69265 -10.30005 -10.21011 -10.14729 -10.01583 -9.89236 -9.69744 -9.58168 -8.91735 -8.42959 -7.99219 -6.69558 -5.79746 -3.21856 1.19768 1.95591 2.64515 2.78430 3.26882 3.40706 3.45476 3.47511 3.52946 4.39088 4.51338 4.68808 4.80256 4.87161 4.89025 5.04769 5.10612 5.20116 5.23413 5.34665 5.37024 5.43671 5.56791 5.62714 5.79778 5.84185 5.90215 6.00719 6.10017 6.12882 6.17964 6.24832 6.42737 6.49910 6.58244 6.60778 6.68473 6.78858 6.93465 7.00759 7.33159 7.58996 7.62730 7.81931 8.02204 8.26011 8.44725 9.20961 9.83072 10.38092 11.29081 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018173 B = 0.003172 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.380685 B = 8825.569853 C = 9744.293109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.068 0.932 4 C -0.134 4.134 5 C 0.167 3.833 6 N -0.587 5.587 7 C -0.252 4.252 8 H 0.067 0.933 9 C 0.003 3.997 10 N -0.904 5.904 11 Si 0.903 3.097 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.141 3.859 16 C 0.135 3.865 17 H 0.089 0.911 18 N -0.707 5.707 19 C 0.587 3.413 20 O -0.529 6.529 21 C -0.024 4.024 22 C 0.045 3.955 23 N -0.525 5.525 24 C 0.093 3.907 25 C 0.647 3.353 26 O -0.570 6.570 27 N -0.509 5.509 28 C 0.099 3.901 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.019 0.981 35 H 0.090 0.910 36 H 0.254 0.746 37 H 0.059 0.941 38 H 0.018 0.982 39 H 0.395 0.605 40 H 0.190 0.810 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.696 9.780 9.601 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.086 0.914 4 C -0.173 4.173 5 C 0.041 3.959 6 N -0.309 5.309 7 C -0.382 4.382 8 H 0.084 0.916 9 C -0.195 4.195 10 N -0.548 5.548 11 Si 0.733 3.267 12 H -0.209 1.209 13 H -0.217 1.217 14 H -0.209 1.209 15 C 0.014 3.986 16 C 0.030 3.970 17 H 0.107 0.893 18 N -0.357 5.357 19 C 0.372 3.628 20 O -0.406 6.406 21 C -0.133 4.133 22 C -0.084 4.084 23 N -0.242 5.242 24 C -0.048 4.048 25 C 0.350 3.650 26 O -0.448 6.448 27 N -0.228 5.228 28 C -0.042 4.042 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.037 0.963 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.036 0.964 39 H 0.228 0.772 40 H 0.207 0.793 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.534 8.769 10.397 19.906 hybrid contribution 0.415 -0.161 -0.246 0.509 sum -14.119 8.608 10.152 19.403 Atomic orbital electron populations 1.21861 0.95927 1.01670 1.00745 1.21315 0.94594 0.99723 0.95374 0.91350 1.22255 1.00687 0.99597 0.94805 1.20853 0.87278 0.97339 0.90394 1.43969 1.47990 1.39917 0.99056 1.19183 1.09682 1.02909 1.06378 0.91571 1.25012 0.97157 0.97486 0.99849 1.70024 1.37712 1.29066 1.18043 0.86355 0.79279 0.83773 0.77311 1.20947 1.21659 1.20852 1.21107 0.89925 0.96810 0.90806 1.21764 0.96880 0.97041 0.81308 0.89262 1.45821 1.65819 1.14079 1.09991 1.16692 0.78326 0.86150 0.81639 1.90852 1.50020 1.15430 1.84272 1.19877 1.12369 0.92379 0.88718 1.21994 1.02270 0.95754 0.88389 1.44900 1.57594 1.11587 1.10131 1.21864 0.99919 0.81480 1.01583 1.16140 0.83015 0.80652 0.85205 1.91027 1.59993 1.81599 1.12179 1.45215 1.57712 1.11634 1.08287 1.21910 1.01948 0.77303 1.03008 0.92867 0.93398 0.92912 0.92651 0.92364 0.96294 0.89231 0.93601 0.92276 0.96444 0.77152 0.79305 0.88803 0.90348 0.90401 0.91212 0.90147 0.88019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.02 37.15 0.34 -1.32 16 2 C -0.09 -1.30 2.27 -90.58 -0.21 -1.51 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 4 C -0.13 -2.32 5.36 -26.61 -0.14 -2.46 16 5 C 0.17 3.76 5.31 -3.71 -0.02 3.74 16 6 N -0.59 -14.31 3.00 -172.58 -0.52 -14.83 16 7 C -0.25 -6.91 9.58 -15.06 -0.14 -7.05 16 8 H 0.07 1.83 7.89 -52.49 -0.41 1.41 16 9 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 10 N -0.90 -25.75 11.18 55.49 0.62 -25.13 16 11 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 C 0.14 2.89 6.06 -3.93 -0.02 2.87 16 16 C 0.14 2.18 2.05 -68.03 -0.14 2.04 16 17 H 0.09 1.69 7.58 -51.93 -0.39 1.30 16 18 N -0.71 -8.75 4.35 -55.22 -0.24 -9.00 16 19 C 0.59 8.28 7.75 -12.86 -0.10 8.18 16 20 O -0.53 -9.53 14.49 5.19 0.08 -9.45 16 21 C -0.02 -0.29 6.88 -81.91 -0.56 -0.85 16 22 C 0.05 0.39 10.91 -16.34 -0.18 0.21 16 23 N -0.52 -5.17 3.12 -128.79 -0.40 -5.57 16 24 C 0.09 0.54 11.16 59.85 0.67 1.21 16 25 C 0.65 8.93 8.49 -87.07 -0.74 8.19 16 26 O -0.57 -9.54 17.35 5.17 0.09 -9.45 16 27 N -0.51 -6.82 3.21 -124.83 -0.40 -7.22 16 28 C 0.10 1.22 10.57 59.85 0.63 1.85 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.45 7.36 -51.93 -0.38 0.07 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 2.29 6.04 -51.93 -0.31 1.98 16 36 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.06 1.31 7.93 -51.93 -0.41 0.90 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.39 3.44 7.16 -40.82 -0.29 3.14 16 40 H 0.19 0.78 7.37 -52.48 -0.39 0.39 16 41 H 0.09 0.64 7.68 -51.93 -0.40 0.24 16 42 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 46 H 0.10 1.31 6.45 -51.93 -0.33 0.97 16 LS Contribution 371.22 15.07 5.59 5.59 Total: -1.00 -34.95 371.22 -8.03 -42.98 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -7.11 Total: 0.28 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: -0.71 Total: 15.11 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: -0.94 Total: -61.76 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.16 Total: -18.90 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.95 -8.03 -42.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968684968.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.729 kcal (2) G-P(sol) polarization free energy of solvation -34.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.83 seconds