Wall clock time and date at job start Fri Apr 10 2020 18:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.45178 * 2 1 4 4 C 1.53045 * 109.46392 * 240.03070 * 2 1 3 5 5 C 1.53186 * 109.31587 * 178.61461 * 4 2 1 6 6 N 1.46928 * 108.77496 * 54.63569 * 5 4 2 7 7 C 1.36939 * 120.62790 * 126.36475 * 6 5 4 8 8 H 1.08002 * 119.99938 * 207.68738 * 7 6 5 9 9 C 1.38817 * 119.99904 * 27.96838 * 7 6 5 10 10 N 1.31617 * 119.99875 * 16.95856 * 9 7 6 11 11 Si 1.86798 * 119.99801 * 196.96197 * 9 7 6 12 12 H 1.48500 * 109.47288 * 59.99321 * 11 9 7 13 13 H 1.48493 * 109.47050 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.46856 * 299.99739 * 11 9 7 15 15 C 1.46921 * 118.73854 * 306.64379 * 6 5 4 16 16 C 1.52765 * 109.00910 * 53.30765 * 15 6 5 17 17 H 1.08999 * 109.38615 * 65.51671 * 16 15 6 18 18 N 1.46503 * 109.56332 * 185.55098 * 16 15 6 19 19 C 1.34773 * 120.00212 * 274.96719 * 18 16 15 20 20 O 1.21703 * 119.99900 * 0.02562 * 19 18 16 21 21 C 1.46658 * 119.99891 * 180.02562 * 19 18 16 22 22 C 1.35137 * 126.38025 * 359.68567 * 21 19 18 23 23 N 1.37017 * 107.88027 * 179.87732 * 22 21 19 24 24 C 1.46501 * 125.65479 * 180.15244 * 23 22 21 25 25 C 1.34620 * 108.69394 * 0.39349 * 23 22 21 26 26 O 1.21726 * 125.72745 * 179.73656 * 25 23 22 27 27 N 1.34761 * 108.54550 * 359.76067 * 25 23 22 28 28 C 1.46500 * 126.18008 * 179.97438 * 27 25 23 29 29 H 1.08994 * 109.47183 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47143 * 299.96919 * 1 2 3 31 31 H 1.08999 * 109.47215 * 59.96615 * 1 2 3 32 32 H 1.09006 * 109.49519 * 58.66387 * 4 2 1 33 33 H 1.08998 * 109.49569 * 298.57267 * 4 2 1 34 34 H 1.09004 * 109.58514 * 294.84829 * 5 4 2 35 35 H 1.08998 * 109.58390 * 174.42319 * 5 4 2 36 36 H 0.97002 * 119.99685 * 180.02562 * 10 9 7 37 37 H 1.09003 * 109.58905 * 173.14327 * 15 6 5 38 38 H 1.09004 * 109.58698 * 293.56726 * 15 6 5 39 39 H 0.97003 * 119.99816 * 94.96406 * 18 16 15 40 40 H 1.08005 * 126.05972 * 0.02790 * 22 21 19 41 41 H 1.08996 * 109.46934 * 180.25829 * 24 23 22 42 42 H 1.09001 * 109.47057 * 300.25998 * 24 23 22 43 43 H 1.08996 * 109.46994 * 60.25831 * 24 23 22 44 44 H 1.09002 * 109.47143 * 269.99235 * 28 27 25 45 45 H 1.08997 * 109.47405 * 29.99730 * 28 27 25 46 46 H 1.09004 * 109.46750 * 150.00157 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6886 -1.2642 6 7 4.0678 -1.2488 0.0001 7 6 4.9757 -2.2741 0.0001 8 1 5.0084 -2.9663 0.8284 9 6 5.8577 -2.4201 -1.0618 10 7 6.0610 -1.4183 -1.8909 11 14 6.7559 -4.0384 -1.3141 12 1 5.7666 -5.1273 -1.5169 13 1 7.6329 -3.9369 -2.5081 14 1 7.5826 -4.3375 -0.1173 15 6 3.5671 -0.6923 1.2643 16 6 2.0398 -0.7207 1.2501 17 1 1.6972 -1.7554 1.2386 18 7 1.5255 -0.0486 2.4460 19 6 1.3970 -0.7321 3.6004 20 8 1.7087 -1.9075 3.6496 21 6 0.8817 -0.0593 4.7974 22 6 0.5046 1.2351 4.8896 23 7 0.0835 1.4601 6.1739 24 6 -0.4128 2.7345 6.6989 25 6 0.2065 0.3173 6.8748 26 8 -0.0755 0.1702 8.0497 27 7 0.6947 -0.6364 6.0573 28 6 0.9787 -2.0263 6.4229 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5134 0.8903 31 1 -0.3633 0.5143 -0.8897 32 1 1.6573 -0.2208 -2.1399 33 1 1.6978 -1.7556 -1.2383 34 1 3.9143 0.3409 -1.3673 35 1 3.9416 -1.2846 -2.0983 36 1 6.6771 -1.5205 -2.6332 37 1 3.9346 -1.2907 2.0980 38 1 3.9097 0.3369 1.3716 39 1 1.2775 0.8884 2.4069 40 1 0.5284 1.9626 4.0917 41 1 -0.6705 2.6181 7.7516 42 1 0.3606 3.4957 6.5962 43 1 -1.2978 3.0379 6.1396 44 1 2.0068 -2.1063 6.7763 45 1 0.2972 -2.3407 7.2133 46 1 0.8436 -2.6662 5.5508 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968684968.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:37 Heat of formation + Delta-G solvation = -17.290749 kcal Electronic energy + Delta-G solvation = -28141.081155 eV Core-core repulsion = 24259.822441 eV Total energy + Delta-G solvation = -3881.258715 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.52495 -40.94283 -39.14246 -37.98666 -36.51620 -36.04736 -34.54344 -32.99688 -31.89018 -30.48196 -29.19178 -28.50708 -27.07936 -25.86841 -24.72965 -23.42330 -22.65607 -21.76272 -21.50027 -20.87300 -18.99167 -18.69568 -17.87242 -17.65433 -17.19505 -16.75175 -16.37303 -16.07629 -15.98575 -15.58263 -15.32970 -15.20994 -15.04671 -14.85904 -14.76347 -14.36333 -14.10660 -13.98656 -13.54441 -13.38612 -13.25288 -13.14849 -13.09008 -12.72418 -12.63759 -12.52928 -12.28228 -11.98223 -11.93614 -11.83041 -11.59162 -11.38885 -11.20630 -10.99088 -10.91794 -10.56771 -10.12210 -8.91337 -8.65568 -7.88749 -5.33194 0.33601 1.11009 1.45647 1.47251 1.54585 1.65333 1.83015 2.23004 2.48816 2.61131 3.25666 3.56373 3.76556 3.80823 3.97272 4.03531 4.08351 4.16551 4.21146 4.33474 4.37749 4.50998 4.57583 4.58844 4.68057 4.74075 4.82692 4.83471 4.93435 4.99734 5.03437 5.10657 5.16171 5.23046 5.27023 5.29445 5.48787 5.53907 5.58396 5.63505 5.67120 5.82799 6.11410 6.39093 6.59581 7.04433 7.15548 7.25074 7.86306 8.34565 9.16604 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018173 B = 0.003172 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.380685 B = 8825.569853 C = 9744.293109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.082 4.082 3 H 0.088 0.912 4 C -0.124 4.124 5 C 0.172 3.828 6 N -0.607 5.607 7 C -0.267 4.267 8 H 0.053 0.947 9 C -0.042 4.042 10 N -0.928 5.928 11 Si 0.961 3.039 12 H -0.280 1.280 13 H -0.288 1.288 14 H -0.280 1.280 15 C 0.143 3.857 16 C 0.155 3.845 17 H 0.058 0.942 18 N -0.688 5.688 19 C 0.591 3.409 20 O -0.579 6.579 21 C -0.070 4.070 22 C 0.100 3.900 23 N -0.516 5.516 24 C 0.084 3.916 25 C 0.631 3.369 26 O -0.610 6.610 27 N -0.519 5.519 28 C 0.101 3.899 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.007 0.993 35 H 0.052 0.948 36 H 0.252 0.748 37 H 0.029 0.971 38 H 0.026 0.974 39 H 0.418 0.582 40 H 0.247 0.753 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.110 0.890 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.776 12.750 9.290 23.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.101 4.101 3 H 0.106 0.894 4 C -0.163 4.163 5 C 0.047 3.953 6 N -0.331 5.331 7 C -0.397 4.397 8 H 0.070 0.930 9 C -0.238 4.238 10 N -0.573 5.573 11 Si 0.790 3.210 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.206 1.206 15 C 0.016 3.984 16 C 0.048 3.952 17 H 0.076 0.924 18 N -0.340 5.340 19 C 0.378 3.622 20 O -0.459 6.459 21 C -0.177 4.177 22 C -0.030 4.030 23 N -0.231 5.231 24 C -0.056 4.056 25 C 0.333 3.667 26 O -0.492 6.492 27 N -0.239 5.239 28 C -0.040 4.040 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.025 0.975 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.043 0.957 39 H 0.257 0.743 40 H 0.263 0.737 41 H 0.097 0.903 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.085 0.915 45 H 0.104 0.896 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.656 11.819 10.083 22.777 hybrid contribution 1.069 -0.994 -0.083 1.462 sum -15.586 10.825 10.000 21.450 Atomic orbital electron populations 1.21790 0.92744 1.01671 1.03143 1.21241 0.97029 0.99608 0.92182 0.89400 1.22088 0.96529 0.99813 0.97905 1.20718 0.90770 0.95440 0.88413 1.44192 1.48079 1.39823 1.00969 1.19358 1.10395 1.03800 1.06194 0.92965 1.25659 0.98151 1.00244 0.99760 1.70147 1.38359 1.30481 1.18352 0.85440 0.78167 0.80341 0.77101 1.20622 1.21337 1.20604 1.21164 0.92982 0.96056 0.88214 1.21188 0.93589 0.96506 0.83898 0.92357 1.45420 1.65175 1.14991 1.08370 1.16949 0.77325 0.85564 0.82354 1.90838 1.52233 1.17809 1.85033 1.19626 1.16576 0.93860 0.87666 1.22845 0.96877 0.94869 0.88454 1.45204 1.56075 1.11642 1.10203 1.22266 1.02157 0.79895 1.01256 1.16391 0.83506 0.81768 0.85036 1.90983 1.61788 1.82489 1.13923 1.45297 1.57714 1.11765 1.09076 1.21828 1.01971 0.77556 1.02652 0.94133 0.90552 0.90984 0.89892 0.93779 0.97508 0.92984 0.93910 0.95241 0.95658 0.74322 0.73687 0.90271 0.87526 0.87178 0.91475 0.89572 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.02 71.98 0.65 -1.85 16 2 C -0.08 -2.09 2.27 -10.77 -0.02 -2.12 16 3 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 4 C -0.12 -4.13 5.36 30.67 0.16 -3.97 16 5 C 0.17 7.85 5.31 86.36 0.46 8.31 16 6 N -0.61 -30.47 3.00 -699.92 -2.10 -32.57 16 7 C -0.27 -15.22 9.58 84.03 0.81 -14.42 16 8 H 0.05 3.04 7.89 -2.91 -0.02 3.02 16 9 C -0.04 -2.38 4.92 84.86 0.42 -1.97 16 10 N -0.93 -54.25 11.18 21.65 0.24 -54.01 16 11 Si 0.96 45.81 29.59 68.60 2.03 47.84 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 13 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 14 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 15 C 0.14 5.92 6.06 86.22 0.52 6.45 16 16 C 0.15 4.84 2.05 44.93 0.09 4.93 16 17 H 0.06 2.24 7.58 -2.39 -0.02 2.22 16 18 N -0.69 -15.22 4.35 -446.82 -1.94 -17.17 16 19 C 0.59 16.06 7.75 86.44 0.67 16.73 16 20 O -0.58 -21.59 14.49 -4.36 -0.06 -21.65 16 21 C -0.07 -1.53 6.88 39.35 0.27 -1.26 16 22 C 0.10 1.23 10.91 83.17 0.91 2.14 16 23 N -0.52 -8.31 3.12 -679.66 -2.12 -10.43 16 24 C 0.08 0.61 11.16 127.77 1.43 2.04 16 25 C 0.63 16.70 8.49 179.11 1.52 18.22 16 26 O -0.61 -20.49 17.35 -4.43 -0.08 -20.56 16 27 N -0.52 -13.71 3.21 -667.05 -2.14 -15.86 16 28 C 0.10 2.62 10.57 127.77 1.35 3.97 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 0.99 7.36 -2.39 -0.02 0.97 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 33 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 35 H 0.05 2.75 6.04 -2.39 -0.01 2.74 16 36 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 37 H 0.03 1.36 7.93 -2.39 -0.02 1.34 16 38 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.42 5.11 7.16 -92.71 -0.66 4.44 16 40 H 0.25 0.05 7.37 -2.91 -0.02 0.03 16 41 H 0.08 0.88 7.68 -2.39 -0.02 0.86 16 42 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 44 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.09 2.04 8.08 -2.39 -0.02 2.02 16 46 H 0.09 2.53 6.45 -2.38 -0.02 2.51 16 Total: -1.00 -83.38 371.22 3.38 -80.00 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 0.33 Total: 7.22 kcal Atomic # 6 Polarization: 27.97 SS G_CDS: 9.23 Total: 37.20 kcal Atomic # 7 Polarization: -121.97 SS G_CDS: -8.07 Total: -130.04 kcal Atomic # 8 Polarization: -42.08 SS G_CDS: -0.14 Total: -42.22 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -83.38 3.38 -80.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968684968.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.713 kcal (2) G-P(sol) polarization free energy of solvation -83.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds