Wall clock time and date at job start Fri Apr 10 2020 18:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.46379 * 2 1 4 4 C 1.53041 * 109.45869 * 240.03902 * 2 1 3 5 5 C 1.53192 * 109.31346 * 178.61780 * 4 2 1 6 6 N 1.46923 * 108.77611 * 54.63358 * 5 4 2 7 7 C 1.36941 * 120.63019 * 126.36652 * 6 5 4 8 8 H 1.07997 * 119.99855 * 332.63126 * 7 6 5 9 9 C 1.38812 * 119.99792 * 152.62621 * 7 6 5 10 10 N 1.31619 * 120.00037 * 159.37460 * 9 7 6 11 11 Si 1.86802 * 120.00125 * 339.37336 * 9 7 6 12 12 H 1.48500 * 109.46978 * 92.93328 * 11 9 7 13 13 H 1.48499 * 109.47361 * 212.93085 * 11 9 7 14 14 H 1.48499 * 109.47049 * 332.93465 * 11 9 7 15 15 C 1.46930 * 118.74249 * 306.39559 * 6 5 4 16 16 C 1.53042 * 109.45828 * 119.97497 * 2 1 3 17 17 H 1.08995 * 109.49778 * 301.36519 * 16 2 1 18 18 N 1.46501 * 109.50031 * 61.43163 * 16 2 1 19 19 C 1.34778 * 120.00034 * 205.00338 * 18 16 2 20 20 O 1.21702 * 119.99963 * 359.97438 * 19 18 16 21 21 C 1.46659 * 119.99912 * 179.97438 * 19 18 16 22 22 C 1.35150 * 126.37781 * 0.15591 * 21 19 18 23 23 N 1.37008 * 107.87453 * 180.26012 * 22 21 19 24 24 C 1.46499 * 125.65071 * 179.72726 * 23 22 21 25 25 C 1.34626 * 108.70112 * 359.74724 * 23 22 21 26 26 O 1.21729 * 125.72856 * 180.02562 * 25 23 22 27 27 N 1.34760 * 108.53962 * 0.02562 * 25 23 22 28 28 C 1.46503 * 126.17937 * 179.97438 * 27 25 23 29 29 H 1.09004 * 109.47263 * 300.03179 * 1 2 3 30 30 H 1.09006 * 109.47266 * 60.02589 * 1 2 3 31 31 H 1.08995 * 109.47543 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.49788 * 298.56887 * 4 2 1 33 33 H 1.09001 * 109.49873 * 58.66239 * 4 2 1 34 34 H 1.08994 * 109.58753 * 174.42281 * 5 4 2 35 35 H 1.09000 * 109.58449 * 294.70714 * 5 4 2 36 36 H 0.96999 * 119.99830 * 179.97438 * 10 9 7 37 37 H 1.09000 * 109.58165 * 293.82454 * 15 6 5 38 38 H 1.08996 * 109.58770 * 173.39671 * 15 6 5 39 39 H 0.97003 * 120.00036 * 24.99953 * 18 16 2 40 40 H 1.08003 * 126.06053 * 0.02562 * 22 21 19 41 41 H 1.09007 * 109.47410 * 179.97438 * 24 23 22 42 42 H 1.08996 * 109.47356 * 299.99692 * 24 23 22 43 43 H 1.08997 * 109.47662 * 60.00163 * 24 23 22 44 44 H 1.09000 * 109.47024 * 0.02719 * 28 27 25 45 45 H 1.08994 * 109.47156 * 240.02496 * 28 27 25 46 46 H 1.08998 * 109.46977 * 120.02327 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7206 -1.2502 5 6 3.5713 -0.6886 -1.2643 6 7 4.0678 -1.2489 -0.0002 7 6 4.9756 -2.2742 -0.0003 8 1 5.0114 -2.9636 -0.8308 9 6 5.8497 -2.4273 1.0671 10 7 6.4259 -3.5906 1.2842 11 14 6.2082 -0.9824 2.1955 12 1 5.2794 -1.0166 3.3537 13 1 7.6087 -1.0694 2.6814 14 1 6.0213 0.2873 1.4484 15 6 3.5713 -0.6889 1.2642 16 6 2.0398 -0.7210 1.2500 17 1 1.6567 -0.2214 2.1398 18 7 1.5800 -2.1119 1.2340 19 6 1.4514 -2.7924 2.3902 20 8 1.7176 -2.2516 3.4475 21 6 0.9906 -4.1846 2.3743 22 6 0.6641 -4.9084 1.2806 23 7 0.2801 -6.1548 1.7004 24 6 -0.1592 -7.2504 0.8327 25 6 0.3728 -6.2058 3.0425 26 8 0.1068 -7.1693 3.7373 27 7 0.8097 -5.0112 3.4876 28 6 1.0469 -4.6432 4.8856 29 1 -0.3634 0.5143 0.8897 30 1 -0.3634 0.5135 -0.8903 31 1 -0.3634 -1.0276 0.0005 32 1 1.6977 -1.7556 -1.2385 33 1 1.6571 -0.2206 -2.1399 34 1 3.9416 -1.2844 -2.0985 35 1 3.9142 0.3407 -1.3698 36 1 7.0370 -3.6975 2.0299 37 1 3.9142 0.3406 1.3674 38 1 3.9416 -1.2849 2.0983 39 1 1.3681 -2.5430 0.3913 40 1 0.6962 -4.5640 0.2575 41 1 -0.4012 -8.1215 1.4416 42 1 -1.0425 -6.9401 0.2747 43 1 0.6396 -7.5050 0.1362 44 1 0.8152 -5.4919 5.5291 45 1 0.4097 -3.8002 5.1526 46 1 2.0925 -4.3637 5.0153 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968684969.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:54 Heat of formation + Delta-G solvation = 14.153986 kcal Electronic energy + Delta-G solvation = -29325.195238 eV Core-core repulsion = 25445.300070 eV Total energy + Delta-G solvation = -3879.895169 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 3.15 seconds Orbital eigenvalues (eV) -42.32558 -39.75145 -37.79881 -36.64527 -35.27710 -34.34153 -33.07670 -31.41282 -30.77617 -29.62263 -28.04196 -27.28689 -26.02802 -24.01096 -23.53054 -22.56303 -21.29467 -20.77832 -20.26961 -18.93020 -18.01452 -16.88578 -16.67516 -16.48914 -15.55112 -15.42429 -15.23723 -14.85160 -14.50131 -14.38315 -14.11102 -14.01906 -13.68986 -13.44408 -13.40542 -13.31189 -12.86949 -12.77576 -12.58040 -12.21683 -12.13616 -12.05290 -11.73149 -11.54082 -11.35779 -11.19673 -10.66597 -10.59178 -10.47231 -10.30947 -9.97463 -9.87532 -9.82933 -9.63606 -9.44924 -8.80912 -8.48130 -7.69002 -6.98147 -5.95882 -3.32034 1.52339 2.23702 2.92035 3.05917 3.39394 3.49786 3.51505 3.58878 3.81693 4.54514 4.66651 4.89381 4.92268 4.98805 5.05653 5.11441 5.14510 5.15400 5.17014 5.37174 5.41004 5.44814 5.60562 5.67067 5.68592 5.79811 5.85298 5.91284 6.00453 6.02030 6.05740 6.15050 6.25860 6.31459 6.39944 6.44793 6.55676 6.64187 6.73157 6.75596 6.91781 7.27350 7.84240 7.94140 8.29278 8.30343 8.54013 8.91448 9.71403 10.07440 11.19551 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011667 B = 0.005337 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.308885 B = 5245.265085 C = 6092.424354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.081 0.919 4 C -0.130 4.130 5 C 0.145 3.855 6 N -0.601 5.601 7 C -0.261 4.261 8 H 0.084 0.916 9 C 0.029 3.971 10 N -0.905 5.905 11 Si 0.875 3.125 12 H -0.284 1.284 13 H -0.304 1.304 14 H -0.271 1.271 15 C 0.112 3.888 16 C 0.138 3.862 17 H 0.083 0.917 18 N -0.687 5.687 19 C 0.593 3.407 20 O -0.543 6.543 21 C -0.020 4.020 22 C 0.051 3.949 23 N -0.524 5.524 24 C 0.094 3.906 25 C 0.649 3.351 26 O -0.575 6.575 27 N -0.509 5.509 28 C 0.108 3.892 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.023 0.977 36 H 0.262 0.738 37 H 0.033 0.967 38 H 0.082 0.918 39 H 0.398 0.602 40 H 0.188 0.812 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.614 1.773 -4.420 16.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.099 0.901 4 C -0.170 4.170 5 C 0.019 3.981 6 N -0.325 5.325 7 C -0.389 4.389 8 H 0.102 0.898 9 C -0.171 4.171 10 N -0.547 5.547 11 Si 0.705 3.295 12 H -0.211 1.211 13 H -0.232 1.232 14 H -0.196 1.196 15 C -0.014 4.014 16 C 0.032 3.968 17 H 0.101 0.899 18 N -0.337 5.337 19 C 0.379 3.621 20 O -0.421 6.421 21 C -0.129 4.129 22 C -0.078 4.078 23 N -0.241 5.241 24 C -0.048 4.048 25 C 0.352 3.648 26 O -0.454 6.454 27 N -0.228 5.228 28 C -0.033 4.033 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.100 0.900 39 H 0.234 0.766 40 H 0.205 0.795 41 H 0.111 0.889 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.095 0.905 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.473 1.326 -3.028 15.822 hybrid contribution 0.423 0.550 0.211 0.726 sum -15.050 1.877 -2.817 15.426 Atomic orbital electron populations 1.21841 0.95419 1.01657 1.01266 1.21325 0.95133 0.99883 0.95016 0.90111 1.22088 0.98871 0.99770 0.96236 1.20953 0.90880 0.96731 0.89534 1.44297 1.48849 1.40264 0.99042 1.18800 1.09937 1.02787 1.07377 0.89810 1.25242 0.97289 0.96466 0.98070 1.69822 1.32416 1.21954 1.30528 0.87056 0.76422 0.84833 0.81155 1.21145 1.23241 1.19612 1.21796 0.91114 0.97602 0.90926 1.21542 0.96819 0.80523 0.97935 0.89862 1.45448 1.66788 1.13761 1.07752 1.16603 0.77657 0.83254 0.84615 1.90805 1.51299 1.69425 1.30584 1.19772 1.12599 0.94542 0.85962 1.21950 1.02545 0.84312 0.99018 1.44846 1.59135 1.12856 1.07250 1.21845 1.00556 0.88524 0.93854 1.16090 0.82986 0.83694 0.82049 1.91003 1.60294 1.34477 1.59578 1.45127 1.59282 1.10998 1.07422 1.21747 1.03373 1.01402 0.76823 0.92941 0.92847 0.92804 0.92337 0.92193 0.91821 0.95924 0.92829 0.94925 0.90039 0.76606 0.79463 0.88904 0.90573 0.90262 0.89642 0.90541 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.05 37.16 0.34 -1.13 16 2 C -0.09 -1.20 2.48 -90.58 -0.22 -1.42 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.13 -1.67 5.20 -26.61 -0.14 -1.81 16 5 C 0.14 2.47 6.52 -3.71 -0.02 2.44 16 6 N -0.60 -12.97 2.69 -172.32 -0.46 -13.43 16 7 C -0.26 -6.87 10.04 -15.06 -0.15 -7.02 16 8 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 9 C 0.03 0.82 5.23 -17.43 -0.09 0.73 16 10 N -0.90 -27.54 13.97 55.49 0.78 -26.77 16 11 Si 0.87 22.63 24.35 -169.99 -4.14 18.49 16 12 H -0.28 -7.44 6.62 56.52 0.37 -7.06 16 13 H -0.30 -8.05 7.11 56.52 0.40 -7.65 16 14 H -0.27 -6.76 6.64 56.52 0.38 -6.39 16 15 C 0.11 2.34 3.80 -3.71 -0.01 2.33 16 16 C 0.14 2.24 2.24 -67.81 -0.15 2.09 16 17 H 0.08 1.38 7.58 -51.93 -0.39 0.98 16 18 N -0.69 -10.71 4.24 -55.00 -0.23 -10.94 16 19 C 0.59 10.53 7.75 -12.86 -0.10 10.43 16 20 O -0.54 -11.26 15.30 5.19 0.08 -11.19 16 21 C -0.02 -0.32 6.88 -81.91 -0.56 -0.89 16 22 C 0.05 0.66 10.91 -16.34 -0.18 0.48 16 23 N -0.52 -7.10 3.12 -128.78 -0.40 -7.50 16 24 C 0.09 0.85 11.16 59.85 0.67 1.52 16 25 C 0.65 11.15 8.49 -87.07 -0.74 10.41 16 26 O -0.57 -11.27 17.11 5.16 0.09 -11.18 16 27 N -0.51 -8.63 3.21 -124.82 -0.40 -9.03 16 28 C 0.11 1.64 9.95 59.85 0.60 2.24 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.53 7.54 -51.93 -0.39 0.14 16 32 H 0.06 0.73 6.40 -51.92 -0.33 0.39 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 1.09 7.93 -51.93 -0.41 0.68 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 37 H 0.03 0.68 7.08 -51.93 -0.37 0.32 16 38 H 0.08 2.02 4.49 -51.93 -0.23 1.79 16 39 H 0.40 5.30 5.49 -40.82 -0.22 5.07 16 40 H 0.19 1.69 7.37 -52.48 -0.39 1.30 16 41 H 0.09 0.90 7.69 -51.93 -0.40 0.50 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 1.19 7.73 -51.93 -0.40 0.79 16 45 H 0.08 1.08 8.06 -51.93 -0.42 0.66 16 46 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 LS Contribution 362.85 15.07 5.47 5.47 Total: -1.00 -35.85 362.85 -6.95 -42.80 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.95 Total: 2.89 kcal Atomic # 6 Polarization: 21.18 SS G_CDS: -0.78 Total: 20.40 kcal Atomic # 7 Polarization: -66.95 SS G_CDS: -0.72 Total: -67.67 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: 0.17 Total: -22.37 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.14 Total: 18.49 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.85 -6.95 -42.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968684969.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.955 kcal (2) G-P(sol) polarization free energy of solvation -35.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.15 seconds