Wall clock time and date at job start Fri Apr 10 2020 18:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.46379 * 2 1 4 4 C 1.53041 * 109.45869 * 240.03902 * 2 1 3 5 5 C 1.53192 * 109.31346 * 178.61780 * 4 2 1 6 6 N 1.46923 * 108.77611 * 54.63358 * 5 4 2 7 7 C 1.36941 * 120.63019 * 126.36652 * 6 5 4 8 8 H 1.07997 * 119.99855 * 332.63126 * 7 6 5 9 9 C 1.38812 * 119.99792 * 152.62621 * 7 6 5 10 10 N 1.31619 * 120.00037 * 159.37460 * 9 7 6 11 11 Si 1.86802 * 120.00125 * 339.37336 * 9 7 6 12 12 H 1.48500 * 109.46978 * 92.93328 * 11 9 7 13 13 H 1.48499 * 109.47361 * 212.93085 * 11 9 7 14 14 H 1.48499 * 109.47049 * 332.93465 * 11 9 7 15 15 C 1.46930 * 118.74249 * 306.39559 * 6 5 4 16 16 C 1.53042 * 109.45828 * 119.97497 * 2 1 3 17 17 H 1.08995 * 109.49778 * 301.36519 * 16 2 1 18 18 N 1.46501 * 109.50031 * 61.43163 * 16 2 1 19 19 C 1.34778 * 120.00034 * 205.00338 * 18 16 2 20 20 O 1.21702 * 119.99963 * 359.97438 * 19 18 16 21 21 C 1.46659 * 119.99912 * 179.97438 * 19 18 16 22 22 C 1.35150 * 126.37781 * 0.15591 * 21 19 18 23 23 N 1.37008 * 107.87453 * 180.26012 * 22 21 19 24 24 C 1.46499 * 125.65071 * 179.72726 * 23 22 21 25 25 C 1.34626 * 108.70112 * 359.74724 * 23 22 21 26 26 O 1.21729 * 125.72856 * 180.02562 * 25 23 22 27 27 N 1.34760 * 108.53962 * 0.02562 * 25 23 22 28 28 C 1.46503 * 126.17937 * 179.97438 * 27 25 23 29 29 H 1.09004 * 109.47263 * 300.03179 * 1 2 3 30 30 H 1.09006 * 109.47266 * 60.02589 * 1 2 3 31 31 H 1.08995 * 109.47543 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.49788 * 298.56887 * 4 2 1 33 33 H 1.09001 * 109.49873 * 58.66239 * 4 2 1 34 34 H 1.08994 * 109.58753 * 174.42281 * 5 4 2 35 35 H 1.09000 * 109.58449 * 294.70714 * 5 4 2 36 36 H 0.96999 * 119.99830 * 179.97438 * 10 9 7 37 37 H 1.09000 * 109.58165 * 293.82454 * 15 6 5 38 38 H 1.08996 * 109.58770 * 173.39671 * 15 6 5 39 39 H 0.97003 * 120.00036 * 24.99953 * 18 16 2 40 40 H 1.08003 * 126.06053 * 0.02562 * 22 21 19 41 41 H 1.09007 * 109.47410 * 179.97438 * 24 23 22 42 42 H 1.08996 * 109.47356 * 299.99692 * 24 23 22 43 43 H 1.08997 * 109.47662 * 60.00163 * 24 23 22 44 44 H 1.09000 * 109.47024 * 0.02719 * 28 27 25 45 45 H 1.08994 * 109.47156 * 240.02496 * 28 27 25 46 46 H 1.08998 * 109.46977 * 120.02327 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7206 -1.2502 5 6 3.5713 -0.6886 -1.2643 6 7 4.0678 -1.2489 -0.0002 7 6 4.9756 -2.2742 -0.0003 8 1 5.0114 -2.9636 -0.8308 9 6 5.8497 -2.4273 1.0671 10 7 6.4259 -3.5906 1.2842 11 14 6.2082 -0.9824 2.1955 12 1 5.2794 -1.0166 3.3537 13 1 7.6087 -1.0694 2.6814 14 1 6.0213 0.2873 1.4484 15 6 3.5713 -0.6889 1.2642 16 6 2.0398 -0.7210 1.2500 17 1 1.6567 -0.2214 2.1398 18 7 1.5800 -2.1119 1.2340 19 6 1.4514 -2.7924 2.3902 20 8 1.7176 -2.2516 3.4475 21 6 0.9906 -4.1846 2.3743 22 6 0.6641 -4.9084 1.2806 23 7 0.2801 -6.1548 1.7004 24 6 -0.1592 -7.2504 0.8327 25 6 0.3728 -6.2058 3.0425 26 8 0.1068 -7.1693 3.7373 27 7 0.8097 -5.0112 3.4876 28 6 1.0469 -4.6432 4.8856 29 1 -0.3634 0.5143 0.8897 30 1 -0.3634 0.5135 -0.8903 31 1 -0.3634 -1.0276 0.0005 32 1 1.6977 -1.7556 -1.2385 33 1 1.6571 -0.2206 -2.1399 34 1 3.9416 -1.2844 -2.0985 35 1 3.9142 0.3407 -1.3698 36 1 7.0370 -3.6975 2.0299 37 1 3.9142 0.3406 1.3674 38 1 3.9416 -1.2849 2.0983 39 1 1.3681 -2.5430 0.3913 40 1 0.6962 -4.5640 0.2575 41 1 -0.4012 -8.1215 1.4416 42 1 -1.0425 -6.9401 0.2747 43 1 0.6396 -7.5050 0.1362 44 1 0.8152 -5.4919 5.5291 45 1 0.4097 -3.8002 5.1526 46 1 2.0925 -4.3637 5.0153 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968684969.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:51 Heat of formation + Delta-G solvation = -11.589970 kcal Electronic energy + Delta-G solvation = -29326.311580 eV Core-core repulsion = 25445.300070 eV Total energy + Delta-G solvation = -3881.011510 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 5.95 seconds Orbital eigenvalues (eV) -43.52413 -41.08938 -39.18439 -37.98417 -36.45646 -35.94227 -34.43085 -33.25733 -32.00515 -30.84026 -29.26868 -28.65166 -27.10330 -25.61053 -24.83937 -23.83927 -22.76442 -21.98994 -21.48903 -20.33482 -19.21229 -18.69663 -17.87821 -17.75351 -17.25033 -16.84856 -16.45680 -16.14426 -15.97349 -15.73910 -15.32301 -15.10583 -15.06909 -14.92305 -14.81749 -14.54947 -14.32208 -14.00933 -13.74072 -13.59170 -13.40024 -13.30586 -13.09578 -12.83541 -12.57516 -12.44163 -12.37799 -12.13800 -11.83602 -11.78600 -11.60957 -11.30865 -11.06151 -11.05236 -10.95121 -10.71630 -10.03612 -8.92836 -8.80603 -8.15268 -5.42074 0.34526 1.11333 1.29823 1.34701 1.41521 1.64201 1.87145 2.29237 2.42098 2.62291 3.09703 3.40412 3.58201 3.80619 3.96085 4.00629 4.03778 4.09844 4.15346 4.31634 4.35817 4.41046 4.54757 4.56680 4.62396 4.71000 4.73257 4.79526 4.80995 4.88710 4.94345 4.98935 5.10365 5.21511 5.24339 5.27824 5.30736 5.51679 5.54236 5.60230 5.66269 5.92092 6.08800 6.16231 6.60723 6.96587 7.02998 7.25583 7.68288 8.08991 9.03865 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011667 B = 0.005337 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.308885 B = 5245.265085 C = 6092.424354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 H 0.087 0.913 4 C -0.119 4.119 5 C 0.136 3.864 6 N -0.610 5.610 7 C -0.222 4.222 8 H 0.066 0.934 9 C -0.030 4.030 10 N -0.953 5.953 11 Si 0.925 3.075 12 H -0.299 1.299 13 H -0.318 1.318 14 H -0.255 1.255 15 C 0.109 3.891 16 C 0.144 3.856 17 H 0.079 0.921 18 N -0.675 5.675 19 C 0.590 3.410 20 O -0.584 6.584 21 C -0.067 4.067 22 C 0.093 3.907 23 N -0.516 5.516 24 C 0.084 3.916 25 C 0.632 3.368 26 O -0.609 6.609 27 N -0.519 5.519 28 C 0.110 3.890 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.254 0.746 37 H 0.033 0.967 38 H 0.037 0.963 39 H 0.411 0.589 40 H 0.236 0.764 41 H 0.083 0.917 42 H 0.114 0.886 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.417 3.051 -7.770 20.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 H 0.106 0.894 4 C -0.158 4.158 5 C 0.012 3.988 6 N -0.334 5.334 7 C -0.352 4.352 8 H 0.084 0.916 9 C -0.225 4.225 10 N -0.600 5.600 11 Si 0.757 3.243 12 H -0.228 1.228 13 H -0.248 1.248 14 H -0.179 1.179 15 C -0.017 4.017 16 C 0.038 3.962 17 H 0.097 0.903 18 N -0.326 5.326 19 C 0.377 3.623 20 O -0.466 6.466 21 C -0.175 4.175 22 C -0.037 4.037 23 N -0.231 5.231 24 C -0.055 4.055 25 C 0.335 3.665 26 O -0.491 6.491 27 N -0.238 5.238 28 C -0.031 4.031 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.249 0.751 40 H 0.252 0.748 41 H 0.101 0.899 42 H 0.132 0.868 43 H 0.117 0.883 44 H 0.111 0.889 45 H 0.102 0.898 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.328 2.656 -6.473 19.618 hybrid contribution 1.237 0.146 1.121 1.676 sum -17.091 2.802 -5.352 18.127 Atomic orbital electron populations 1.21774 0.92791 1.02492 1.02382 1.21310 0.97128 0.99473 0.92616 0.89447 1.21999 0.95081 1.00975 0.97741 1.21236 0.94005 0.96658 0.86862 1.44420 1.48183 1.39657 1.01174 1.18823 1.08653 1.02483 1.05217 0.91592 1.25725 0.98775 0.97825 1.00173 1.69930 1.34675 1.23643 1.31773 0.86250 0.74825 0.83613 0.79647 1.22752 1.24767 1.17908 1.21724 0.94526 0.96408 0.89052 1.21424 0.93271 0.81331 1.00190 0.90342 1.45327 1.65975 1.13537 1.07759 1.16892 0.77033 0.83855 0.84540 1.90778 1.53252 1.70462 1.32117 1.19764 1.16364 0.94499 0.86885 1.22663 0.98119 0.83026 0.99933 1.45159 1.57621 1.13952 1.06371 1.22261 1.02818 0.87063 0.93403 1.16348 0.83522 0.83339 0.83305 1.90960 1.61932 1.35529 1.60704 1.45268 1.59187 1.11362 1.08015 1.21700 1.02343 1.01988 0.77082 0.93177 0.90461 0.92142 0.91448 0.88434 0.91981 0.95057 0.93725 0.94894 0.94438 0.75059 0.74818 0.89860 0.86770 0.88299 0.88858 0.89775 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.05 71.98 0.65 -1.43 16 2 C -0.09 -1.81 2.48 -10.77 -0.03 -1.83 16 3 H 0.09 1.78 8.14 -2.39 -0.02 1.77 16 4 C -0.12 -2.42 5.20 30.67 0.16 -2.26 16 5 C 0.14 4.15 6.52 86.36 0.56 4.72 16 6 N -0.61 -25.29 2.69 -699.11 -1.88 -27.17 16 7 C -0.22 -11.61 10.04 84.03 0.84 -10.77 16 8 H 0.07 3.68 8.06 -2.91 -0.02 3.65 16 9 C -0.03 -1.76 5.23 84.86 0.44 -1.32 16 10 N -0.95 -60.08 13.97 21.65 0.30 -59.78 16 11 Si 0.92 48.48 24.35 68.60 1.67 50.15 16 12 H -0.30 -16.21 6.62 99.48 0.66 -15.55 16 13 H -0.32 -17.16 7.11 99.48 0.71 -16.45 16 14 H -0.25 -12.41 6.64 99.48 0.66 -11.75 16 15 C 0.11 4.47 3.80 86.36 0.33 4.79 16 16 C 0.14 4.39 2.24 45.07 0.10 4.49 16 17 H 0.08 2.51 7.58 -2.39 -0.02 2.49 16 18 N -0.67 -19.60 4.24 -446.14 -1.89 -21.49 16 19 C 0.59 20.71 7.75 86.44 0.67 21.38 16 20 O -0.58 -25.00 15.30 -4.36 -0.07 -25.07 16 21 C -0.07 -2.12 6.88 39.35 0.27 -1.85 16 22 C 0.09 2.11 10.91 83.17 0.91 3.02 16 23 N -0.52 -12.75 3.12 -679.64 -2.12 -14.87 16 24 C 0.08 1.24 11.16 127.77 1.43 2.67 16 25 C 0.63 21.54 8.49 179.11 1.52 23.06 16 26 O -0.61 -24.23 17.11 -4.44 -0.08 -24.30 16 27 N -0.52 -17.83 3.21 -667.04 -2.14 -19.97 16 28 C 0.11 3.55 9.95 127.77 1.27 4.82 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.06 0.85 7.54 -2.39 -0.02 0.84 16 32 H 0.07 1.28 6.40 -2.38 -0.02 1.26 16 33 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.06 1.91 7.93 -2.39 -0.02 1.89 16 35 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.25 15.71 8.31 -92.71 -0.77 14.94 16 37 H 0.03 1.34 7.08 -2.39 -0.02 1.32 16 38 H 0.04 1.89 4.49 -2.39 -0.01 1.88 16 39 H 0.41 9.35 5.49 -92.71 -0.51 8.84 16 40 H 0.24 2.89 7.37 -2.91 -0.02 2.87 16 41 H 0.08 1.45 7.69 -2.38 -0.02 1.43 16 42 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.09 2.76 7.73 -2.39 -0.02 2.74 16 45 H 0.08 2.51 8.06 -2.39 -0.02 2.49 16 46 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 Total: -1.00 -83.62 362.85 3.32 -80.30 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.39 Total: 12.71 kcal Atomic # 6 Polarization: 40.35 SS G_CDS: 9.13 Total: 49.48 kcal Atomic # 7 Polarization: -135.54 SS G_CDS: -7.73 Total: -143.27 kcal Atomic # 8 Polarization: -49.23 SS G_CDS: -0.14 Total: -49.37 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 1.67 Total: 50.15 kcal Total: -83.62 3.32 -80.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968684969.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.712 kcal (2) G-P(sol) polarization free energy of solvation -83.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.95 seconds