Wall clock time and date at job start Fri Apr 10 2020 18:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46034 * 2 1 4 4 C 1.53041 * 109.46350 * 119.96038 * 2 1 3 5 5 C 1.53188 * 109.31492 * 181.38844 * 4 2 1 6 6 N 1.46929 * 108.77424 * 305.36435 * 5 4 2 7 7 C 1.36939 * 120.63089 * 233.63580 * 6 5 4 8 8 H 1.07999 * 120.00048 * 152.60411 * 7 6 5 9 9 C 1.38815 * 119.99749 * 332.59611 * 7 6 5 10 10 N 1.31616 * 119.99667 * 159.36900 * 9 7 6 11 11 Si 1.86796 * 119.99953 * 339.36370 * 9 7 6 12 12 H 1.48504 * 109.46935 * 92.90385 * 11 9 7 13 13 H 1.48504 * 109.47093 * 212.89753 * 11 9 7 14 14 H 1.48503 * 109.47571 * 332.90368 * 11 9 7 15 15 C 1.46925 * 118.73764 * 53.60690 * 6 5 4 16 16 C 1.53043 * 109.46151 * 240.03058 * 2 1 3 17 17 H 1.09003 * 109.49508 * 298.56423 * 16 2 1 18 18 N 1.46500 * 109.49678 * 58.63002 * 16 2 1 19 19 C 1.34780 * 119.99827 * 205.00435 * 18 16 2 20 20 O 1.21702 * 120.00217 * 359.97438 * 19 18 16 21 21 C 1.46660 * 119.99965 * 180.02562 * 19 18 16 22 22 C 1.35148 * 126.37473 * 359.68154 * 21 19 18 23 23 N 1.37018 * 107.87218 * 179.84542 * 22 21 19 24 24 C 1.46504 * 125.65013 * 180.16273 * 23 22 21 25 25 C 1.34623 * 108.69731 * 0.43000 * 23 22 21 26 26 O 1.21729 * 125.72294 * 179.75639 * 25 23 22 27 27 N 1.34751 * 108.54659 * 359.73977 * 25 23 22 28 28 C 1.46499 * 126.18536 * 180.02562 * 27 25 23 29 29 H 1.08998 * 109.46966 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46871 * 59.97293 * 1 2 3 31 31 H 1.08996 * 109.46697 * 299.97026 * 1 2 3 32 32 H 1.08998 * 109.49349 * 301.33926 * 4 2 1 33 33 H 1.09003 * 109.49225 * 61.43081 * 4 2 1 34 34 H 1.08997 * 109.58657 * 185.58181 * 5 4 2 35 35 H 1.08995 * 109.70774 * 65.21564 * 5 4 2 36 36 H 0.97002 * 119.99823 * 180.02562 * 10 9 7 37 37 H 1.09006 * 109.58555 * 186.60039 * 15 6 5 38 38 H 1.09006 * 109.58661 * 66.18401 * 15 6 5 39 39 H 0.96996 * 120.00413 * 24.99984 * 18 16 2 40 40 H 1.07996 * 126.06373 * 359.97067 * 22 21 19 41 41 H 1.09001 * 109.46876 * 180.28264 * 24 23 22 42 42 H 1.08991 * 109.47219 * 300.28765 * 24 23 22 43 43 H 1.09002 * 109.46623 * 60.28771 * 24 23 22 44 44 H 1.09003 * 109.46995 * 269.95946 * 28 27 25 45 45 H 1.09004 * 109.46761 * 29.94870 * 28 27 25 46 46 H 1.08996 * 109.47680 * 149.95351 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7206 1.2501 5 6 3.5714 -0.6884 1.2643 6 7 4.0679 -1.2487 0.0001 7 6 4.9758 -2.2739 0.0001 8 1 5.0117 -2.9634 -0.8303 9 6 5.8500 -2.4267 1.0676 10 7 6.4262 -3.5899 1.2849 11 14 6.2086 -0.9815 2.1954 12 1 5.2794 -1.0148 3.3533 13 1 7.6090 -1.0688 2.6819 14 1 6.0225 0.2880 1.4477 15 6 3.5714 -0.6886 -1.2642 16 6 2.0399 -0.7208 -1.2500 17 1 1.6979 -1.7557 -1.2382 18 7 1.5250 -0.0493 -2.4459 19 6 1.3965 -0.7333 -3.6002 20 8 1.7086 -1.9086 -3.6491 21 6 0.8815 -0.0609 -4.7975 22 6 0.4937 1.2306 -4.8872 23 7 0.0833 1.4580 -6.1746 24 6 -0.4133 2.7322 -6.7000 25 6 0.2064 0.3150 -6.8750 26 8 -0.0756 0.1676 -8.0500 27 7 0.6946 -0.6383 -6.0573 28 6 0.9787 -2.0284 -6.4222 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5143 -0.8898 31 1 -0.3632 0.5134 0.8902 32 1 1.6573 -0.2205 2.1398 33 1 1.6978 -1.7555 1.2384 34 1 3.9417 -1.2842 2.0985 35 1 3.9164 0.3403 1.3684 36 1 7.0368 -3.6969 2.0310 37 1 3.9418 -1.2846 -2.0984 38 1 3.9143 0.3409 -1.3675 39 1 1.2765 0.8875 -2.4071 40 1 0.5070 1.9555 -4.0868 41 1 -0.6702 2.6157 -7.7529 42 1 -1.2987 3.0353 -6.1413 43 1 0.3597 3.4937 -6.5967 44 1 0.0919 -2.6381 -6.2491 45 1 1.2539 -2.0784 -7.4758 46 1 1.8017 -2.4030 -5.8135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968684970.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:01 Heat of formation + Delta-G solvation = 13.022835 kcal Electronic energy + Delta-G solvation = -28213.972498 eV Core-core repulsion = 24334.028279 eV Total energy + Delta-G solvation = -3879.944219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.65108 -39.83199 -37.97610 -36.94761 -35.60740 -34.71204 -33.27986 -31.44823 -31.01216 -29.54157 -28.15631 -27.45076 -26.30925 -24.18264 -23.60829 -22.45665 -21.36792 -20.85906 -20.40370 -19.74125 -18.07739 -16.99773 -16.87297 -16.74952 -15.98709 -15.54560 -15.23278 -15.09588 -14.94922 -14.49107 -14.32795 -14.02103 -13.84087 -13.81433 -13.49716 -13.27803 -13.11461 -12.88160 -12.69977 -12.36148 -12.24363 -12.15106 -11.78359 -11.68092 -11.34809 -11.01178 -10.93212 -10.77610 -10.70320 -10.18584 -10.15501 -10.03486 -9.88429 -9.72941 -9.47141 -9.11119 -8.57006 -8.02563 -7.00003 -5.94203 -3.31233 1.15315 1.92539 2.61905 2.72733 3.21381 3.29889 3.45472 3.47004 3.49381 4.35599 4.51996 4.64354 4.72155 4.83646 4.85863 4.90214 4.98895 5.05367 5.10354 5.17391 5.18568 5.34931 5.41224 5.61251 5.67978 5.74901 5.76337 5.79592 5.87829 5.96847 6.06452 6.08180 6.19947 6.30114 6.38926 6.42084 6.44731 6.55881 6.61557 6.70964 6.88894 6.97277 7.50233 7.95086 7.99488 8.20213 8.34387 8.93822 9.71454 10.06468 11.21705 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019955 B = 0.003201 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.816506 B = 8744.328183 C = 9374.158310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.126 4.126 5 C 0.121 3.879 6 N -0.601 5.601 7 C -0.260 4.260 8 H 0.087 0.913 9 C 0.024 3.976 10 N -0.907 5.907 11 Si 0.883 3.117 12 H -0.288 1.288 13 H -0.304 1.304 14 H -0.271 1.271 15 C 0.144 3.856 16 C 0.134 3.866 17 H 0.094 0.906 18 N -0.708 5.708 19 C 0.587 3.413 20 O -0.525 6.525 21 C -0.024 4.024 22 C 0.045 3.955 23 N -0.525 5.525 24 C 0.093 3.907 25 C 0.647 3.353 26 O -0.569 6.569 27 N -0.509 5.509 28 C 0.099 3.901 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.026 0.974 36 H 0.263 0.737 37 H 0.069 0.931 38 H 0.023 0.977 39 H 0.395 0.605 40 H 0.190 0.810 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.823 14.687 -9.016 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.088 0.912 4 C -0.166 4.166 5 C -0.004 4.004 6 N -0.324 5.324 7 C -0.388 4.388 8 H 0.105 0.895 9 C -0.175 4.175 10 N -0.550 5.550 11 Si 0.714 3.286 12 H -0.216 1.216 13 H -0.232 1.232 14 H -0.196 1.196 15 C 0.016 3.984 16 C 0.029 3.971 17 H 0.112 0.888 18 N -0.359 5.359 19 C 0.372 3.628 20 O -0.401 6.401 21 C -0.134 4.134 22 C -0.084 4.084 23 N -0.242 5.242 24 C -0.049 4.049 25 C 0.350 3.650 26 O -0.447 6.447 27 N -0.228 5.228 28 C -0.042 4.042 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.041 0.959 39 H 0.229 0.771 40 H 0.207 0.793 41 H 0.112 0.888 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.655 13.555 -9.884 22.945 hybrid contribution 0.162 1.330 0.828 1.575 sum -15.493 14.884 -9.056 23.315 Atomic orbital electron populations 1.21847 0.95426 1.01973 1.00952 1.21314 0.95105 0.99627 0.95060 0.91210 1.22072 0.98270 1.00738 0.95507 1.21411 0.91721 0.97008 0.90290 1.44281 1.48667 1.40471 0.99006 1.18945 1.09649 1.02617 1.07562 0.89548 1.25267 0.97419 0.96654 0.98165 1.69842 1.32562 1.21976 1.30595 0.86953 0.76312 0.84821 0.80548 1.21620 1.23194 1.19628 1.21226 0.90158 0.96900 0.90086 1.21805 0.96454 0.97446 0.81393 0.88763 1.45766 1.66093 1.14101 1.09954 1.16697 0.78328 0.86128 0.81623 1.90875 1.49769 1.15342 1.84124 1.19851 1.12313 0.92462 0.88728 1.21982 1.02301 0.95811 0.88330 1.44907 1.57805 1.11584 1.09919 1.21865 0.99897 0.81478 1.01613 1.16141 0.83022 0.80593 0.85251 1.91031 1.59791 1.81635 1.12244 1.45219 1.57605 1.11656 1.08316 1.21927 1.03313 0.76699 1.02295 0.92608 0.93141 0.92807 0.92158 0.91303 0.90727 0.95625 0.92755 0.91299 0.95898 0.77109 0.79348 0.88778 0.90419 0.90348 0.91311 0.90058 0.87861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.02 37.16 0.34 -1.15 16 2 C -0.09 -1.19 2.27 -90.58 -0.21 -1.40 16 3 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 4 C -0.13 -2.00 5.36 -26.61 -0.14 -2.14 16 5 C 0.12 2.48 4.21 -3.71 -0.02 2.46 16 6 N -0.60 -13.84 2.77 -172.32 -0.48 -14.32 16 7 C -0.26 -7.23 10.04 -15.06 -0.15 -7.38 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 9 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 10 N -0.91 -27.78 13.97 55.49 0.78 -27.00 16 11 Si 0.88 21.93 24.34 -169.99 -4.14 17.79 16 12 H -0.29 -6.84 6.62 56.52 0.37 -6.47 16 13 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 14 H -0.27 -6.56 6.64 56.52 0.38 -6.18 16 15 C 0.14 2.74 6.09 -3.71 -0.02 2.72 16 16 C 0.13 2.02 2.06 -67.81 -0.14 1.88 16 17 H 0.09 1.70 7.58 -51.93 -0.39 1.31 16 18 N -0.71 -8.10 4.35 -55.00 -0.24 -8.34 16 19 C 0.59 7.91 7.75 -12.86 -0.10 7.81 16 20 O -0.52 -9.24 14.49 5.19 0.08 -9.16 16 21 C -0.02 -0.28 6.88 -81.91 -0.56 -0.84 16 22 C 0.05 0.36 10.91 -16.33 -0.18 0.18 16 23 N -0.52 -4.96 3.12 -128.78 -0.40 -5.36 16 24 C 0.09 0.51 11.16 59.85 0.67 1.17 16 25 C 0.65 8.72 8.49 -87.08 -0.74 7.98 16 26 O -0.57 -9.38 17.35 5.16 0.09 -9.29 16 27 N -0.51 -6.64 3.21 -124.82 -0.40 -7.04 16 28 C 0.10 1.19 10.58 59.85 0.63 1.82 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.42 7.36 -51.93 -0.38 0.04 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 1.71 4.50 -51.93 -0.23 1.47 16 35 H 0.03 0.51 7.07 -51.93 -0.37 0.15 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.07 1.46 7.93 -51.93 -0.41 1.05 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.39 3.01 7.16 -40.82 -0.29 2.72 16 40 H 0.19 0.65 7.37 -52.49 -0.39 0.26 16 41 H 0.09 0.61 7.68 -51.93 -0.40 0.21 16 42 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 46 H 0.10 1.35 6.45 -51.93 -0.33 1.01 16 LS Contribution 364.83 15.07 5.50 5.50 Total: -1.00 -36.47 364.83 -6.97 -43.44 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -7.04 Total: 0.06 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: -0.71 Total: 13.72 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -0.74 Total: -62.06 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.16 Total: -18.45 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.14 Total: 17.79 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.47 -6.97 -43.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968684970.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.467 kcal (2) G-P(sol) polarization free energy of solvation -36.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds