Wall clock time and date at job start Fri Apr 10 2020 18:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46034 * 2 1 4 4 C 1.53041 * 109.46350 * 119.96038 * 2 1 3 5 5 C 1.53188 * 109.31492 * 181.38844 * 4 2 1 6 6 N 1.46929 * 108.77424 * 305.36435 * 5 4 2 7 7 C 1.36939 * 120.63089 * 233.63580 * 6 5 4 8 8 H 1.07999 * 120.00048 * 152.60411 * 7 6 5 9 9 C 1.38815 * 119.99749 * 332.59611 * 7 6 5 10 10 N 1.31616 * 119.99667 * 159.36900 * 9 7 6 11 11 Si 1.86796 * 119.99953 * 339.36370 * 9 7 6 12 12 H 1.48504 * 109.46935 * 92.90385 * 11 9 7 13 13 H 1.48504 * 109.47093 * 212.89753 * 11 9 7 14 14 H 1.48503 * 109.47571 * 332.90368 * 11 9 7 15 15 C 1.46925 * 118.73764 * 53.60690 * 6 5 4 16 16 C 1.53043 * 109.46151 * 240.03058 * 2 1 3 17 17 H 1.09003 * 109.49508 * 298.56423 * 16 2 1 18 18 N 1.46500 * 109.49678 * 58.63002 * 16 2 1 19 19 C 1.34780 * 119.99827 * 205.00435 * 18 16 2 20 20 O 1.21702 * 120.00217 * 359.97438 * 19 18 16 21 21 C 1.46660 * 119.99965 * 180.02562 * 19 18 16 22 22 C 1.35148 * 126.37473 * 359.68154 * 21 19 18 23 23 N 1.37018 * 107.87218 * 179.84542 * 22 21 19 24 24 C 1.46504 * 125.65013 * 180.16273 * 23 22 21 25 25 C 1.34623 * 108.69731 * 0.43000 * 23 22 21 26 26 O 1.21729 * 125.72294 * 179.75639 * 25 23 22 27 27 N 1.34751 * 108.54659 * 359.73977 * 25 23 22 28 28 C 1.46499 * 126.18536 * 180.02562 * 27 25 23 29 29 H 1.08998 * 109.46966 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46871 * 59.97293 * 1 2 3 31 31 H 1.08996 * 109.46697 * 299.97026 * 1 2 3 32 32 H 1.08998 * 109.49349 * 301.33926 * 4 2 1 33 33 H 1.09003 * 109.49225 * 61.43081 * 4 2 1 34 34 H 1.08997 * 109.58657 * 185.58181 * 5 4 2 35 35 H 1.08995 * 109.70774 * 65.21564 * 5 4 2 36 36 H 0.97002 * 119.99823 * 180.02562 * 10 9 7 37 37 H 1.09006 * 109.58555 * 186.60039 * 15 6 5 38 38 H 1.09006 * 109.58661 * 66.18401 * 15 6 5 39 39 H 0.96996 * 120.00413 * 24.99984 * 18 16 2 40 40 H 1.07996 * 126.06373 * 359.97067 * 22 21 19 41 41 H 1.09001 * 109.46876 * 180.28264 * 24 23 22 42 42 H 1.08991 * 109.47219 * 300.28765 * 24 23 22 43 43 H 1.09002 * 109.46623 * 60.28771 * 24 23 22 44 44 H 1.09003 * 109.46995 * 269.95946 * 28 27 25 45 45 H 1.09004 * 109.46761 * 29.94870 * 28 27 25 46 46 H 1.08996 * 109.47680 * 149.95351 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7206 1.2501 5 6 3.5714 -0.6884 1.2643 6 7 4.0679 -1.2487 0.0001 7 6 4.9758 -2.2739 0.0001 8 1 5.0117 -2.9634 -0.8303 9 6 5.8500 -2.4267 1.0676 10 7 6.4262 -3.5899 1.2849 11 14 6.2086 -0.9815 2.1954 12 1 5.2794 -1.0148 3.3533 13 1 7.6090 -1.0688 2.6819 14 1 6.0225 0.2880 1.4477 15 6 3.5714 -0.6886 -1.2642 16 6 2.0399 -0.7208 -1.2500 17 1 1.6979 -1.7557 -1.2382 18 7 1.5250 -0.0493 -2.4459 19 6 1.3965 -0.7333 -3.6002 20 8 1.7086 -1.9086 -3.6491 21 6 0.8815 -0.0609 -4.7975 22 6 0.4937 1.2306 -4.8872 23 7 0.0833 1.4580 -6.1746 24 6 -0.4133 2.7322 -6.7000 25 6 0.2064 0.3150 -6.8750 26 8 -0.0756 0.1676 -8.0500 27 7 0.6946 -0.6383 -6.0573 28 6 0.9787 -2.0284 -6.4222 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5143 -0.8898 31 1 -0.3632 0.5134 0.8902 32 1 1.6573 -0.2205 2.1398 33 1 1.6978 -1.7555 1.2384 34 1 3.9417 -1.2842 2.0985 35 1 3.9164 0.3403 1.3684 36 1 7.0368 -3.6969 2.0310 37 1 3.9418 -1.2846 -2.0984 38 1 3.9143 0.3409 -1.3675 39 1 1.2765 0.8875 -2.4071 40 1 0.5070 1.9555 -4.0868 41 1 -0.6702 2.6157 -7.7529 42 1 -1.2987 3.0353 -6.1413 43 1 0.3597 3.4937 -6.5967 44 1 0.0919 -2.6381 -6.2491 45 1 1.2539 -2.0784 -7.4758 46 1 1.8017 -2.4030 -5.8135 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968684970.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:59 Heat of formation + Delta-G solvation = -14.472984 kcal Electronic energy + Delta-G solvation = -28215.164806 eV Core-core repulsion = 24334.028279 eV Total energy + Delta-G solvation = -3881.136527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.52826 -40.99382 -39.29484 -37.99543 -36.56245 -36.10158 -34.60808 -33.37322 -32.00779 -30.66171 -29.29289 -28.70060 -27.09195 -25.69219 -24.82727 -23.61867 -22.86349 -21.80173 -21.52551 -20.98010 -19.02377 -18.76283 -17.87733 -17.66984 -17.33254 -16.98179 -16.38911 -16.27314 -16.02272 -15.56130 -15.43227 -15.21373 -15.10923 -14.92104 -14.88502 -14.45683 -14.37972 -13.98730 -13.72637 -13.53443 -13.41570 -13.26996 -13.22738 -12.65134 -12.63385 -12.50367 -12.44605 -12.15872 -11.84740 -11.71694 -11.55386 -11.35555 -11.22347 -11.06415 -10.93024 -10.74508 -10.17180 -8.95628 -8.84796 -8.15476 -5.49012 0.33464 1.10412 1.32340 1.44321 1.54574 1.65090 1.81616 2.22127 2.43599 2.56559 3.08013 3.38357 3.59686 3.77153 3.95601 3.98131 4.02654 4.07193 4.18930 4.32604 4.36274 4.37724 4.47442 4.57879 4.59040 4.63715 4.67537 4.83716 4.89348 4.92022 4.93189 5.02316 5.05103 5.11844 5.20134 5.23360 5.25233 5.38900 5.49574 5.59911 5.65435 5.86983 6.11568 6.12834 6.58698 6.92814 7.04226 7.25150 7.63161 7.99967 9.05049 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019955 B = 0.003201 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.816506 B = 8744.328183 C = 9374.158310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.082 4.082 3 H 0.101 0.899 4 C -0.121 4.121 5 C 0.113 3.887 6 N -0.617 5.617 7 C -0.254 4.254 8 H 0.035 0.965 9 C -0.039 4.039 10 N -0.962 5.962 11 Si 0.959 3.041 12 H -0.267 1.267 13 H -0.314 1.314 14 H -0.252 1.252 15 C 0.143 3.857 16 C 0.150 3.850 17 H 0.054 0.946 18 N -0.686 5.686 19 C 0.590 3.410 20 O -0.580 6.580 21 C -0.071 4.071 22 C 0.102 3.898 23 N -0.516 5.516 24 C 0.084 3.916 25 C 0.630 3.370 26 O -0.611 6.611 27 N -0.520 5.520 28 C 0.101 3.899 29 H 0.036 0.964 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.262 0.738 37 H 0.029 0.971 38 H 0.049 0.951 39 H 0.420 0.580 40 H 0.250 0.750 41 H 0.077 0.923 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.326 20.405 -7.563 28.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.101 4.101 3 H 0.120 0.880 4 C -0.161 4.161 5 C -0.011 4.011 6 N -0.342 5.342 7 C -0.383 4.383 8 H 0.052 0.948 9 C -0.234 4.234 10 N -0.608 5.608 11 Si 0.787 3.213 12 H -0.194 1.194 13 H -0.243 1.243 14 H -0.176 1.176 15 C 0.016 3.984 16 C 0.044 3.956 17 H 0.072 0.928 18 N -0.339 5.339 19 C 0.377 3.623 20 O -0.460 6.460 21 C -0.179 4.179 22 C -0.028 4.028 23 N -0.231 5.231 24 C -0.056 4.056 25 C 0.332 3.668 26 O -0.492 6.492 27 N -0.239 5.239 28 C -0.040 4.040 29 H 0.055 0.945 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.259 0.741 40 H 0.266 0.734 41 H 0.096 0.904 42 H 0.129 0.871 43 H 0.126 0.874 44 H 0.090 0.910 45 H 0.102 0.898 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.226 19.389 -8.421 27.912 hybrid contribution 0.895 -0.458 0.253 1.037 sum -17.332 18.931 -8.168 26.935 Atomic orbital electron populations 1.21798 0.92699 1.01611 1.03399 1.21285 0.97190 1.00066 0.91581 0.88042 1.22005 0.94718 1.00553 0.98809 1.21558 0.94922 0.96908 0.87722 1.44351 1.48330 1.39927 1.01576 1.18773 1.10753 1.02975 1.05848 0.94757 1.26017 0.97481 0.99308 1.00569 1.70008 1.34174 1.24480 1.32139 0.85730 0.75516 0.81134 0.78925 1.19366 1.24329 1.17635 1.21323 0.92979 0.96871 0.87187 1.21290 0.93453 0.96625 0.84232 0.92767 1.45356 1.65268 1.15037 1.08200 1.16980 0.77317 0.85501 0.82470 1.90865 1.52208 1.17990 1.84971 1.19633 1.16620 0.94008 0.87612 1.22871 0.96717 0.94836 0.88388 1.45210 1.56273 1.11571 1.10055 1.22271 1.02190 0.79882 1.01224 1.16398 0.83541 0.81744 0.85067 1.90986 1.61644 1.82556 1.14048 1.45292 1.57662 1.11707 1.09234 1.21812 1.02863 0.77286 1.02045 0.94484 0.90457 0.90597 0.88515 0.93644 0.93521 0.93518 0.92917 0.95186 0.93329 0.74066 0.73408 0.90378 0.87145 0.87419 0.90977 0.89822 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.02 71.98 0.65 -1.47 16 2 C -0.08 -1.77 2.27 -10.77 -0.02 -1.79 16 3 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 4 C -0.12 -3.48 5.36 30.67 0.16 -3.31 16 5 C 0.11 4.38 4.21 86.36 0.36 4.74 16 6 N -0.62 -28.70 2.77 -699.10 -1.94 -30.64 16 7 C -0.25 -14.94 10.04 84.03 0.84 -14.09 16 8 H 0.03 2.31 8.06 -2.91 -0.02 2.29 16 9 C -0.04 -2.35 5.23 84.86 0.44 -1.90 16 10 N -0.96 -62.05 13.97 21.65 0.30 -61.75 16 11 Si 0.96 45.77 24.34 68.60 1.67 47.44 16 12 H -0.27 -11.76 6.62 99.48 0.66 -11.10 16 13 H -0.31 -15.41 7.11 99.48 0.71 -14.70 16 14 H -0.25 -11.14 6.64 99.48 0.66 -10.48 16 15 C 0.14 5.43 6.09 86.36 0.53 5.96 16 16 C 0.15 4.33 2.06 45.07 0.09 4.42 16 17 H 0.05 2.03 7.58 -2.39 -0.02 2.01 16 18 N -0.69 -13.66 4.35 -446.14 -1.94 -15.61 16 19 C 0.59 15.48 7.75 86.44 0.67 16.15 16 20 O -0.58 -21.73 14.49 -4.36 -0.06 -21.79 16 21 C -0.07 -1.50 6.88 39.35 0.27 -1.23 16 22 C 0.10 1.12 10.91 83.17 0.91 2.03 16 23 N -0.52 -7.85 3.12 -679.65 -2.12 -9.97 16 24 C 0.08 0.53 11.16 127.77 1.43 1.96 16 25 C 0.63 16.41 8.49 179.11 1.52 17.93 16 26 O -0.61 -20.36 17.35 -4.44 -0.08 -20.44 16 27 N -0.52 -13.56 3.21 -667.05 -2.14 -15.71 16 28 C 0.10 2.65 10.58 127.77 1.35 4.00 16 29 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 0.80 7.36 -2.39 -0.02 0.78 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 2.06 4.50 -2.39 -0.01 2.05 16 35 H 0.05 1.64 7.07 -2.39 -0.02 1.62 16 36 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 37 H 0.03 1.34 7.93 -2.38 -0.02 1.32 16 38 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.42 3.87 7.16 -92.71 -0.66 3.21 16 40 H 0.25 -0.45 7.37 -2.91 -0.02 -0.47 16 41 H 0.08 0.82 7.68 -2.39 -0.02 0.80 16 42 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 43 H 0.11 0.13 8.14 -2.39 -0.02 0.12 16 44 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.08 2.06 8.08 -2.38 -0.02 2.04 16 46 H 0.09 2.54 6.45 -2.39 -0.02 2.52 16 Total: -1.00 -90.82 364.83 3.13 -87.69 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 0.24 Total: 7.39 kcal Atomic # 6 Polarization: 24.18 SS G_CDS: 9.21 Total: 33.38 kcal Atomic # 7 Polarization: -125.83 SS G_CDS: -7.84 Total: -133.67 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -0.14 Total: -42.23 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.67 Total: 47.44 kcal Total: -90.82 3.13 -87.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968684970.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.213 kcal (2) G-P(sol) polarization free energy of solvation -90.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds