Wall clock time and date at job start Fri Apr 10 2020 18:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.44829 * 2 1 4 4 C 1.53047 * 109.46087 * 119.96616 * 2 1 3 5 5 C 1.53189 * 109.31181 * 181.38636 * 4 2 1 6 6 N 1.46924 * 108.77632 * 305.36310 * 5 4 2 7 7 C 1.36942 * 120.62928 * 233.63069 * 6 5 4 8 8 H 1.07994 * 120.00068 * 27.65944 * 7 6 5 9 9 C 1.38816 * 119.99831 * 207.65877 * 7 6 5 10 10 N 1.31621 * 119.99878 * 17.36594 * 9 7 6 11 11 Si 1.86796 * 119.99776 * 197.36296 * 9 7 6 12 12 H 1.48506 * 109.47178 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46771 * 120.00045 * 11 9 7 14 14 H 1.48494 * 109.47407 * 240.00032 * 11 9 7 15 15 C 1.46998 * 118.75432 * 53.60993 * 6 5 4 16 16 C 1.53043 * 109.46203 * 240.03264 * 2 1 3 17 17 H 1.08994 * 109.49606 * 58.62864 * 16 2 1 18 18 N 1.46503 * 109.49773 * 298.56620 * 16 2 1 19 19 C 1.34775 * 119.99979 * 155.06527 * 18 16 2 20 20 O 1.21700 * 120.00179 * 359.97438 * 19 18 16 21 21 C 1.46663 * 119.99889 * 180.02562 * 19 18 16 22 22 C 1.35146 * 126.37937 * 0.17019 * 21 19 18 23 23 N 1.37008 * 107.88002 * 180.24271 * 22 21 19 24 24 C 1.46494 * 125.65486 * 179.78959 * 23 22 21 25 25 C 1.34622 * 108.69339 * 359.75404 * 23 22 21 26 26 O 1.21728 * 125.72730 * 179.97438 * 25 23 22 27 27 N 1.34757 * 108.54852 * 0.02562 * 25 23 22 28 28 C 1.46506 * 126.18446 * 179.97438 * 27 25 23 29 29 H 1.09005 * 109.46893 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46836 * 299.96592 * 1 2 3 31 31 H 1.08997 * 109.46796 * 59.96765 * 1 2 3 32 32 H 1.09000 * 109.49533 * 301.33734 * 4 2 1 33 33 H 1.08993 * 109.49667 * 61.43541 * 4 2 1 34 34 H 1.09003 * 109.58781 * 65.15319 * 5 4 2 35 35 H 1.08999 * 109.58353 * 185.43284 * 5 4 2 36 36 H 0.96997 * 119.99726 * 180.02562 * 10 9 7 37 37 H 1.09000 * 109.62490 * 186.61690 * 15 6 5 38 38 H 1.08999 * 109.57823 * 66.17156 * 15 6 5 39 39 H 0.97001 * 119.99938 * 335.06244 * 18 16 2 40 40 H 1.08000 * 126.05702 * 0.02562 * 22 21 19 41 41 H 1.09003 * 109.46977 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.47065 * 299.98273 * 24 23 22 43 43 H 1.08998 * 109.47111 * 59.98528 * 24 23 22 44 44 H 1.09000 * 109.46782 * 0.02562 * 28 27 25 45 45 H 1.09003 * 109.46880 * 240.02261 * 28 27 25 46 46 H 1.08994 * 109.47015 * 120.02221 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 1.2501 5 6 3.5714 -0.6886 1.2643 6 7 4.0679 -1.2488 0.0000 7 6 4.9758 -2.2740 0.0001 8 1 5.0087 -2.9661 0.8284 9 6 5.8539 -2.4235 -1.0646 10 7 6.0602 -1.4217 -1.8931 11 14 6.7428 -4.0462 -1.3213 12 1 6.3399 -5.0045 -0.2609 13 1 6.3852 -4.6014 -2.6515 14 1 8.2094 -3.8230 -1.2562 15 6 3.5714 -0.6886 -1.2650 16 6 2.0399 -0.7208 -1.2501 17 1 1.6568 -0.2211 -2.1398 18 7 1.5802 -2.1117 -1.2342 19 6 1.4530 -2.7926 -2.3904 20 8 1.7195 -2.2518 -3.4476 21 6 0.9922 -4.1849 -2.3745 22 6 0.6586 -4.9064 -1.2816 23 7 0.2883 -6.1573 -1.7003 24 6 -0.1433 -7.2555 -0.8321 25 6 0.3861 -6.2098 -3.0420 26 8 0.1319 -7.1770 -3.7359 27 7 0.8137 -5.0121 -3.4877 28 6 1.0533 -4.6447 -4.8856 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5133 0.8903 31 1 -0.3633 0.5143 -0.8897 32 1 1.6572 -0.2207 2.1399 33 1 1.6979 -1.7556 1.2383 34 1 3.9143 0.3410 1.3674 35 1 3.9416 -1.2824 2.1000 36 1 6.6735 -1.5263 -2.6373 37 1 3.9413 -1.2844 -2.0995 38 1 3.9143 0.3409 -1.3681 39 1 1.3674 -2.5426 -0.3916 40 1 0.6832 -4.5597 -0.2591 41 1 -0.3754 -8.1298 -1.4403 42 1 0.6557 -7.5011 -0.1325 43 1 -1.0315 -6.9527 -0.2776 44 1 0.8313 -5.4966 -5.5283 45 1 2.0970 -4.3566 -5.0117 46 1 0.4100 -3.8077 -5.1567 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968684971.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:10 Heat of formation + Delta-G solvation = 8.416859 kcal Electronic energy + Delta-G solvation = -29273.432433 eV Core-core repulsion = 25393.288484 eV Total energy + Delta-G solvation = -3880.143949 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -42.35157 -39.55619 -37.61253 -36.66227 -35.28974 -34.18215 -32.97756 -31.11770 -30.62612 -29.30895 -27.84939 -27.14185 -26.04935 -24.16436 -23.34806 -22.16624 -21.14457 -20.76003 -20.23841 -18.73566 -17.95936 -16.82447 -16.70522 -16.43830 -15.46346 -15.28790 -14.94370 -14.80885 -14.41610 -14.18029 -13.96829 -13.95713 -13.74640 -13.44584 -13.24437 -13.02263 -12.85569 -12.63794 -12.61469 -12.16245 -12.00242 -11.64255 -11.49722 -11.37838 -11.13318 -10.94931 -10.75884 -10.56193 -10.49445 -10.24184 -9.96838 -9.86012 -9.76146 -9.58506 -9.49791 -8.50059 -8.47063 -7.71565 -6.68396 -5.79710 -3.22301 1.52591 2.20919 2.88304 3.09243 3.36480 3.43795 3.46223 3.64324 3.88022 4.48045 4.64175 4.96399 5.07361 5.10307 5.12892 5.18376 5.20096 5.29569 5.36535 5.39711 5.39980 5.51448 5.60043 5.82129 5.83409 5.87549 5.94676 5.99787 6.10015 6.23224 6.30709 6.36183 6.39005 6.48238 6.58865 6.70101 6.70461 6.82967 6.92805 7.24067 7.31902 7.63969 7.78357 7.97618 8.26433 8.43591 8.64411 9.18785 9.83143 10.38250 11.28191 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010232 B = 0.005692 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2735.912137 B = 4917.725036 C = 6142.447600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.079 0.921 4 C -0.129 4.129 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.253 4.253 8 H 0.064 0.936 9 C 0.008 3.992 10 N -0.896 5.896 11 Si 0.894 3.106 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.290 1.290 15 C 0.159 3.841 16 C 0.129 3.871 17 H 0.079 0.921 18 N -0.685 5.685 19 C 0.589 3.411 20 O -0.539 6.539 21 C -0.017 4.017 22 C 0.044 3.956 23 N -0.525 5.525 24 C 0.094 3.906 25 C 0.648 3.352 26 O -0.575 6.575 27 N -0.510 5.510 28 C 0.107 3.893 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.018 0.982 35 H 0.053 0.947 36 H 0.254 0.746 37 H 0.098 0.902 38 H 0.027 0.973 39 H 0.395 0.605 40 H 0.188 0.812 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.297 -2.765 5.088 15.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.097 0.903 4 C -0.168 4.168 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.383 4.383 8 H 0.082 0.918 9 C -0.191 4.191 10 N -0.540 5.540 11 Si 0.724 3.276 12 H -0.204 1.204 13 H -0.216 1.216 14 H -0.217 1.217 15 C 0.033 3.967 16 C 0.023 3.977 17 H 0.097 0.903 18 N -0.335 5.335 19 C 0.374 3.626 20 O -0.417 6.417 21 C -0.126 4.126 22 C -0.085 4.085 23 N -0.242 5.242 24 C -0.047 4.047 25 C 0.350 3.650 26 O -0.454 6.454 27 N -0.229 5.229 28 C -0.034 4.034 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.116 0.884 38 H 0.045 0.955 39 H 0.230 0.770 40 H 0.205 0.795 41 H 0.111 0.889 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.099 0.901 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.156 -3.089 3.641 14.939 hybrid contribution 0.581 -0.997 0.339 1.203 sum -13.575 -4.086 3.979 14.725 Atomic orbital electron populations 1.21854 0.95919 1.01369 1.01058 1.21326 0.94633 0.99987 0.95386 0.90260 1.22083 0.99270 0.99312 0.96133 1.20930 0.90665 0.96595 0.90286 1.44007 1.48294 1.39574 0.99113 1.19093 1.10040 1.03033 1.06084 0.91814 1.24983 0.97166 0.97085 0.99883 1.70003 1.37444 1.28880 1.17704 0.86365 0.79307 0.84061 0.77859 1.20350 1.21622 1.21714 1.21232 0.86533 0.97913 0.91049 1.21849 0.99030 0.79649 0.97152 0.90320 1.45510 1.66496 1.14117 1.07384 1.16586 0.78088 0.83114 0.84846 1.90814 1.51132 1.69293 1.30509 1.19938 1.12058 0.94780 0.85852 1.21961 1.03156 0.84310 0.99110 1.44843 1.59618 1.12481 1.07277 1.21835 1.00611 0.88489 0.93814 1.16107 0.83080 0.83721 0.82047 1.91003 1.60531 1.34252 1.59624 1.45166 1.59399 1.10803 1.07504 1.21760 1.03435 1.01433 0.76740 0.93045 0.93113 0.93042 0.92709 0.92796 0.96431 0.92805 0.93628 0.88387 0.95544 0.77014 0.79467 0.88924 0.90385 0.90552 0.89699 0.90149 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.05 37.16 0.34 -1.29 16 2 C -0.09 -1.32 2.48 -90.57 -0.22 -1.54 16 3 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 4 C -0.13 -1.80 5.20 -26.61 -0.14 -1.93 16 5 C 0.14 2.61 6.51 -3.71 -0.02 2.58 16 6 N -0.59 -13.33 2.91 -172.27 -0.50 -13.83 16 7 C -0.25 -6.53 9.59 -15.06 -0.14 -6.67 16 8 H 0.06 1.62 7.89 -52.49 -0.41 1.21 16 9 C 0.01 0.22 4.91 -17.43 -0.09 0.14 16 10 N -0.90 -25.85 11.19 55.49 0.62 -25.23 16 11 Si 0.89 21.85 29.59 -169.99 -5.03 16.82 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 15 C 0.16 3.59 4.91 -3.67 -0.02 3.57 16 16 C 0.13 2.23 2.24 -67.81 -0.15 2.07 16 17 H 0.08 1.41 7.58 -51.93 -0.39 1.02 16 18 N -0.68 -10.95 4.24 -55.00 -0.23 -11.19 16 19 C 0.59 10.50 7.75 -12.86 -0.10 10.40 16 20 O -0.54 -11.33 15.30 5.19 0.08 -11.25 16 21 C -0.02 -0.28 6.88 -81.91 -0.56 -0.84 16 22 C 0.04 0.55 10.91 -16.34 -0.18 0.37 16 23 N -0.52 -6.89 3.12 -128.79 -0.40 -7.29 16 24 C 0.09 0.82 11.16 59.84 0.67 1.48 16 25 C 0.65 10.88 8.49 -87.07 -0.74 10.14 16 26 O -0.58 -11.09 17.11 5.16 0.09 -11.00 16 27 N -0.51 -8.48 3.21 -124.82 -0.40 -8.88 16 28 C 0.11 1.62 9.95 59.85 0.60 2.21 16 29 H 0.05 0.55 7.54 -51.93 -0.39 0.16 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.71 6.40 -51.93 -0.33 0.38 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.05 0.98 7.94 -51.93 -0.41 0.56 16 36 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.10 2.64 6.04 -51.93 -0.31 2.33 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.39 5.39 5.49 -40.82 -0.22 5.17 16 40 H 0.19 1.62 7.37 -52.49 -0.39 1.24 16 41 H 0.09 0.86 7.68 -51.93 -0.40 0.46 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 1.16 7.73 -51.93 -0.40 0.76 16 45 H 0.08 1.29 8.06 -51.93 -0.42 0.87 16 46 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 LS Contribution 369.28 15.07 5.56 5.56 Total: -1.00 -34.28 369.28 -8.01 -42.29 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.02 Total: 3.31 kcal Atomic # 6 Polarization: 21.46 SS G_CDS: -0.77 Total: 20.69 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: -0.92 Total: -66.43 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 0.17 Total: -22.25 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.28 -8.01 -42.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968684971.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.702 kcal (2) G-P(sol) polarization free energy of solvation -34.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds