Wall clock time and date at job start Fri Apr 10 2020 18:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00003 * 2 1 4 4 C 1.50700 * 109.47125 * 180.02562 * 3 2 1 5 5 N 1.30441 * 125.98812 * 269.96108 * 4 3 2 6 6 N 1.39943 * 108.89670 * 180.02562 * 5 4 3 7 7 C 1.46497 * 125.75426 * 179.97438 * 6 5 4 8 8 C 1.34257 * 108.48834 * 359.75194 * 6 5 4 9 9 C 1.38049 * 107.41961 * 0.39261 * 8 6 5 10 10 C 1.47419 * 126.41450 * 179.87140 * 9 8 6 11 11 O 1.21605 * 119.99970 * 179.68730 * 10 9 8 12 12 N 1.34778 * 120.00507 * 359.68944 * 10 9 8 13 13 C 1.46500 * 120.00385 * 179.97438 * 12 10 9 14 14 H 1.08995 * 109.46930 * 35.00598 * 13 12 10 15 15 C 1.52997 * 109.47137 * 274.99807 * 13 12 10 16 16 C 1.53008 * 109.47037 * 154.99641 * 13 12 10 17 17 C 1.53497 * 114.20384 * 179.97438 * 16 13 12 18 18 N 1.47070 * 87.98301 * 87.52522 * 17 16 13 19 19 C 1.36932 * 136.05620 * 207.08686 * 18 17 16 20 20 H 1.08006 * 120.00205 * 7.81892 * 19 18 17 21 21 C 1.38809 * 120.00281 * 187.82655 * 19 18 17 22 22 N 1.31616 * 120.00068 * 195.17204 * 21 19 18 23 23 Si 1.86802 * 119.99918 * 15.16359 * 21 19 18 24 24 H 1.48504 * 109.47042 * 270.00682 * 23 21 19 25 25 H 1.48499 * 109.47021 * 30.00157 * 23 21 19 26 26 H 1.48492 * 109.47106 * 150.00508 * 23 21 19 27 27 C 1.47068 * 87.88415 * 27.33811 * 18 17 16 28 28 H 1.09006 * 109.47490 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47336 * 299.99341 * 1 2 3 30 30 H 1.08999 * 109.47284 * 59.99857 * 1 2 3 31 31 H 1.09002 * 109.46560 * 60.00208 * 3 2 1 32 32 H 1.08999 * 109.47265 * 300.00273 * 3 2 1 33 33 H 1.09002 * 109.46652 * 89.97877 * 7 6 5 34 34 H 1.08993 * 109.47194 * 209.97516 * 7 6 5 35 35 H 1.08992 * 109.47439 * 329.98475 * 7 6 5 36 36 H 1.08002 * 126.29463 * 180.24080 * 8 6 5 37 37 H 0.97001 * 119.99491 * 359.97438 * 12 10 9 38 38 H 1.08995 * 109.47159 * 299.99950 * 15 13 12 39 39 H 1.08996 * 109.46758 * 60.00334 * 15 13 12 40 40 H 1.08999 * 109.46751 * 180.02562 * 15 13 12 41 41 H 1.09008 * 113.41028 * 46.80551 * 16 13 12 42 42 H 1.08996 * 113.46841 * 332.74047 * 17 16 13 43 43 H 1.08998 * 113.51535 * 202.31022 * 17 16 13 44 44 H 0.96995 * 120.00585 * 354.89801 * 22 21 19 45 45 H 1.09005 * 113.46482 * 87.44223 * 27 18 17 46 46 H 1.09000 * 113.46807 * 217.87726 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2771 1.1265 1.0545 6 7 5.6104 1.0213 0.6426 7 6 6.7748 0.9302 1.5269 8 6 5.6420 1.0129 -0.6995 9 6 4.3396 1.1210 -1.1443 10 6 3.8946 1.1552 -2.5493 11 8 2.7105 1.2481 -2.8100 12 7 4.8002 1.0837 -3.5450 13 6 4.3579 1.1172 -4.9412 14 1 3.4944 1.7759 -5.0331 15 6 3.9725 -0.2944 -5.3881 16 6 5.4937 1.6393 -5.8236 17 6 5.1454 1.7185 -7.3164 18 7 4.6126 3.0665 -7.0673 19 6 3.6629 3.8720 -7.6367 20 1 3.0170 3.4822 -8.4096 21 6 3.5302 5.1896 -7.2206 22 7 2.4503 5.8733 -7.5345 23 14 4.8844 5.9923 -6.2150 24 1 4.6255 5.7704 -4.7696 25 1 6.1934 5.3941 -6.5808 26 1 4.9109 7.4504 -6.4950 27 6 5.5533 3.1710 -5.9417 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6885 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 6.9827 -0.1169 1.7472 34 1 7.6395 1.3768 1.0362 35 1 6.5686 1.4627 2.4553 36 1 6.5244 0.9380 -1.3178 37 1 5.7448 1.0100 -3.3370 38 1 4.8361 -0.9531 -5.2963 39 1 3.1634 -0.6662 -4.7596 40 1 3.6439 -0.2695 -6.4271 41 1 6.4555 1.1711 -5.6136 42 1 4.3846 1.0008 -7.6233 43 1 6.0192 1.7106 -7.9679 44 1 1.7812 5.4823 -8.1178 45 1 6.5353 3.5463 -6.2301 46 1 5.1400 3.6910 -5.0774 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969992050.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:44 Heat of formation + Delta-G solvation = 64.242544 kcal Electronic energy + Delta-G solvation = -27872.547376 eV Core-core repulsion = 23994.824211 eV Total energy + Delta-G solvation = -3877.723166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.60751 -39.56109 -38.25777 -37.70593 -34.70008 -33.79866 -32.38130 -31.34178 -29.66966 -29.04180 -27.75738 -26.66897 -25.46954 -25.05905 -23.77824 -22.57523 -21.42654 -20.28144 -19.96042 -18.99288 -17.68363 -17.26033 -16.55308 -16.22892 -16.01316 -15.70286 -15.66193 -15.25253 -15.02208 -14.60280 -14.29171 -13.88629 -13.71526 -13.44733 -13.22120 -13.10919 -13.06493 -12.90204 -12.37909 -12.19341 -12.12266 -11.90893 -11.43964 -11.40765 -11.15226 -11.04834 -10.88351 -10.61480 -10.24753 -10.02859 -9.80959 -9.70359 -9.45114 -9.38400 -9.11553 -8.91725 -8.69403 -8.58995 -7.10931 -6.23186 -3.14709 1.34882 1.90111 2.08463 3.42568 3.45197 3.50824 3.55412 3.65589 3.91782 4.20108 4.38684 4.65339 4.69788 4.75046 4.83398 4.94761 4.98182 5.00465 5.14957 5.20392 5.30679 5.34193 5.41276 5.49206 5.51528 5.67468 5.68679 5.75511 5.81474 5.91014 6.03106 6.14219 6.21261 6.25245 6.35642 6.41221 6.53021 6.55373 6.60717 6.78325 7.00732 7.11152 7.20463 7.34692 7.81504 8.31330 8.56407 9.04829 9.58638 10.44821 11.26968 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012185 B = 0.003684 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.266101 B = 7597.671037 C = 7966.719167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.382 6.382 3 C 0.140 3.860 4 C 0.131 3.869 5 N -0.283 5.283 6 N -0.360 5.360 7 C 0.097 3.903 8 C 0.095 3.905 9 C -0.266 4.266 10 C 0.591 3.409 11 O -0.531 6.531 12 N -0.721 5.721 13 C 0.169 3.831 14 H 0.104 0.896 15 C -0.156 4.156 16 C -0.140 4.140 17 C 0.126 3.874 18 N -0.622 5.622 19 C -0.303 4.303 20 H 0.081 0.919 21 C -0.023 4.023 22 N -0.933 5.933 23 Si 1.061 2.939 24 H -0.294 1.294 25 H -0.283 1.283 26 H -0.297 1.297 27 C 0.105 3.895 28 H 0.085 0.915 29 H 0.039 0.961 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.185 0.815 37 H 0.391 0.609 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.050 0.950 43 H 0.037 0.963 44 H 0.261 0.739 45 H 0.044 0.956 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.761 -13.895 17.774 24.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.300 6.300 3 C 0.062 3.938 4 C -0.037 4.037 5 N -0.106 5.106 6 N -0.139 5.139 7 C -0.044 4.044 8 C -0.056 4.056 9 C -0.281 4.281 10 C 0.378 3.622 11 O -0.408 6.408 12 N -0.372 5.372 13 C 0.065 3.935 14 H 0.122 0.878 15 C -0.214 4.214 16 C -0.160 4.160 17 C -0.001 4.001 18 N -0.350 5.350 19 C -0.429 4.429 20 H 0.099 0.901 21 C -0.222 4.222 22 N -0.575 5.575 23 Si 0.893 3.107 24 H -0.222 1.222 25 H -0.209 1.209 26 H -0.224 1.224 27 C -0.021 4.021 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.202 0.798 37 H 0.224 0.776 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.371 -12.459 19.621 25.060 hybrid contribution 0.277 -1.144 -1.678 2.050 sum 9.648 -13.602 17.943 24.496 Atomic orbital electron populations 1.22730 0.80470 1.02698 1.00278 1.87869 1.19951 1.26665 1.95526 1.20719 0.84778 0.85899 1.02445 1.21937 0.95690 0.96910 0.89122 1.77159 0.86341 1.24565 1.22559 1.48288 1.06328 1.54463 1.04863 1.22000 0.83771 1.03809 0.94782 1.23075 0.98943 0.98434 0.85158 1.20346 0.92107 1.20815 0.94806 1.17158 0.85796 0.76012 0.83243 1.90772 1.16412 1.49627 1.83996 1.45903 1.09332 1.75566 1.06369 1.20612 0.97783 0.97132 0.77928 0.87800 1.22105 1.01102 0.96238 1.01996 1.23186 0.97157 0.98002 0.97631 1.22396 0.96321 0.89360 0.92032 1.46235 1.39750 1.15635 1.33400 1.20118 1.08145 0.93073 1.21611 0.90100 1.25709 1.01632 0.92829 1.02029 1.70883 1.08299 1.41305 1.37028 0.83787 0.75619 0.75624 0.75639 1.22186 1.20938 1.22414 1.22720 0.93926 0.93149 0.92279 0.89678 0.94217 0.93322 0.92101 0.88919 0.90193 0.88925 0.88827 0.79795 0.77621 0.93125 0.92398 0.91320 0.90678 0.93214 0.94570 0.92863 0.93846 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -5.75 10.69 -35.23 -0.38 -6.12 16 3 C 0.14 2.03 5.97 36.01 0.21 2.25 16 4 C 0.13 1.96 6.89 -82.02 -0.57 1.40 16 5 N -0.28 -3.88 12.50 33.89 0.42 -3.46 16 6 N -0.36 -3.63 3.98 -67.60 -0.27 -3.90 16 7 C 0.10 0.47 11.44 59.85 0.68 1.15 16 8 C 0.09 0.94 10.99 -16.56 -0.18 0.75 16 9 C -0.27 -3.76 6.13 -105.07 -0.64 -4.40 16 10 C 0.59 9.75 7.78 -12.52 -0.10 9.65 16 11 O -0.53 -10.84 14.58 5.27 0.08 -10.77 16 12 N -0.72 -10.17 5.07 -54.88 -0.28 -10.45 16 13 C 0.17 2.81 2.43 -67.93 -0.16 2.65 16 14 H 0.10 2.27 7.36 -51.93 -0.38 1.89 16 15 C -0.16 -2.29 9.29 37.16 0.35 -1.95 16 16 C -0.14 -2.26 3.73 -89.97 -0.34 -2.60 16 17 C 0.13 2.39 8.08 -8.50 -0.07 2.32 16 18 N -0.62 -15.21 3.42 -184.59 -0.63 -15.84 16 19 C -0.30 -8.85 11.03 -15.06 -0.17 -9.01 16 20 H 0.08 2.49 8.06 -52.48 -0.42 2.06 16 21 C -0.02 -0.69 5.50 -17.43 -0.10 -0.79 16 22 N -0.93 -30.13 13.70 55.49 0.76 -29.37 16 23 Si 1.06 27.25 25.50 -169.99 -4.34 22.91 16 24 H -0.29 -7.38 6.97 56.52 0.39 -6.99 16 25 H -0.28 -6.64 5.66 56.52 0.32 -6.32 16 26 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 27 C 0.11 2.17 5.15 -8.37 -0.04 2.13 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.47 6.55 -51.93 -0.34 1.13 16 33 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.19 0.97 7.46 -52.49 -0.39 0.58 16 37 H 0.39 3.98 7.53 -40.82 -0.31 3.67 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.02 6.49 -51.93 -0.34 0.69 16 41 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 42 H 0.05 0.92 6.43 -51.93 -0.33 0.59 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.26 8.34 8.73 -40.82 -0.36 7.98 16 45 H 0.04 0.87 7.02 -51.93 -0.36 0.51 16 46 H 0.05 1.14 6.21 -51.93 -0.32 0.82 16 LS Contribution 375.99 15.07 5.67 5.67 Total: -1.00 -39.04 375.99 -6.06 -45.10 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.09 Total: 1.18 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -0.01 Total: 5.05 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: 0.00 Total: -63.02 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.30 Total: -16.89 kcal Atomic # 14 Polarization: 27.25 SS G_CDS: -4.34 Total: 22.91 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -39.04 -6.06 -45.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969992050.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.347 kcal (2) G-P(sol) polarization free energy of solvation -39.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds