Wall clock time and date at job start Fri Apr 10 2020 18:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00003 * 2 1 4 4 C 1.50700 * 109.47125 * 180.02562 * 3 2 1 5 5 N 1.30441 * 125.98812 * 269.96108 * 4 3 2 6 6 N 1.39943 * 108.89670 * 180.02562 * 5 4 3 7 7 C 1.46497 * 125.75426 * 179.97438 * 6 5 4 8 8 C 1.34257 * 108.48834 * 359.75194 * 6 5 4 9 9 C 1.38049 * 107.41961 * 0.39261 * 8 6 5 10 10 C 1.47419 * 126.41450 * 179.87140 * 9 8 6 11 11 O 1.21605 * 119.99970 * 179.68730 * 10 9 8 12 12 N 1.34778 * 120.00507 * 359.68944 * 10 9 8 13 13 C 1.46500 * 120.00385 * 179.97438 * 12 10 9 14 14 H 1.08995 * 109.46930 * 35.00598 * 13 12 10 15 15 C 1.52997 * 109.47137 * 274.99807 * 13 12 10 16 16 C 1.53008 * 109.47037 * 154.99641 * 13 12 10 17 17 C 1.53497 * 114.20384 * 179.97438 * 16 13 12 18 18 N 1.47070 * 87.98301 * 87.52522 * 17 16 13 19 19 C 1.36932 * 136.05620 * 207.08686 * 18 17 16 20 20 H 1.08006 * 120.00205 * 7.81892 * 19 18 17 21 21 C 1.38809 * 120.00281 * 187.82655 * 19 18 17 22 22 N 1.31616 * 120.00068 * 195.17204 * 21 19 18 23 23 Si 1.86802 * 119.99918 * 15.16359 * 21 19 18 24 24 H 1.48504 * 109.47042 * 270.00682 * 23 21 19 25 25 H 1.48499 * 109.47021 * 30.00157 * 23 21 19 26 26 H 1.48492 * 109.47106 * 150.00508 * 23 21 19 27 27 C 1.47068 * 87.88415 * 27.33811 * 18 17 16 28 28 H 1.09006 * 109.47490 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47336 * 299.99341 * 1 2 3 30 30 H 1.08999 * 109.47284 * 59.99857 * 1 2 3 31 31 H 1.09002 * 109.46560 * 60.00208 * 3 2 1 32 32 H 1.08999 * 109.47265 * 300.00273 * 3 2 1 33 33 H 1.09002 * 109.46652 * 89.97877 * 7 6 5 34 34 H 1.08993 * 109.47194 * 209.97516 * 7 6 5 35 35 H 1.08992 * 109.47439 * 329.98475 * 7 6 5 36 36 H 1.08002 * 126.29463 * 180.24080 * 8 6 5 37 37 H 0.97001 * 119.99491 * 359.97438 * 12 10 9 38 38 H 1.08995 * 109.47159 * 299.99950 * 15 13 12 39 39 H 1.08996 * 109.46758 * 60.00334 * 15 13 12 40 40 H 1.08999 * 109.46751 * 180.02562 * 15 13 12 41 41 H 1.09008 * 113.41028 * 46.80551 * 16 13 12 42 42 H 1.08996 * 113.46841 * 332.74047 * 17 16 13 43 43 H 1.08998 * 113.51535 * 202.31022 * 17 16 13 44 44 H 0.96995 * 120.00585 * 354.89801 * 22 21 19 45 45 H 1.09005 * 113.46482 * 87.44223 * 27 18 17 46 46 H 1.09000 * 113.46807 * 217.87726 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2771 1.1265 1.0545 6 7 5.6104 1.0213 0.6426 7 6 6.7748 0.9302 1.5269 8 6 5.6420 1.0129 -0.6995 9 6 4.3396 1.1210 -1.1443 10 6 3.8946 1.1552 -2.5493 11 8 2.7105 1.2481 -2.8100 12 7 4.8002 1.0837 -3.5450 13 6 4.3579 1.1172 -4.9412 14 1 3.4944 1.7759 -5.0331 15 6 3.9725 -0.2944 -5.3881 16 6 5.4937 1.6393 -5.8236 17 6 5.1454 1.7185 -7.3164 18 7 4.6126 3.0665 -7.0673 19 6 3.6629 3.8720 -7.6367 20 1 3.0170 3.4822 -8.4096 21 6 3.5302 5.1896 -7.2206 22 7 2.4503 5.8733 -7.5345 23 14 4.8844 5.9923 -6.2150 24 1 4.6255 5.7704 -4.7696 25 1 6.1934 5.3941 -6.5808 26 1 4.9109 7.4504 -6.4950 27 6 5.5533 3.1710 -5.9417 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6885 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 6.9827 -0.1169 1.7472 34 1 7.6395 1.3768 1.0362 35 1 6.5686 1.4627 2.4553 36 1 6.5244 0.9380 -1.3178 37 1 5.7448 1.0100 -3.3370 38 1 4.8361 -0.9531 -5.2963 39 1 3.1634 -0.6662 -4.7596 40 1 3.6439 -0.2695 -6.4271 41 1 6.4555 1.1711 -5.6136 42 1 4.3846 1.0008 -7.6233 43 1 6.0192 1.7106 -7.9679 44 1 1.7812 5.4823 -8.1178 45 1 6.5353 3.5463 -6.2301 46 1 5.1400 3.6910 -5.0774 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969992050.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:43 Heat of formation + Delta-G solvation = 31.978744 kcal Electronic energy + Delta-G solvation = -27873.946440 eV Core-core repulsion = 23994.824211 eV Total energy + Delta-G solvation = -3879.122229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.51007 -40.95255 -39.66700 -38.77750 -36.10882 -34.59775 -34.48933 -32.57236 -30.79003 -29.92284 -29.55136 -27.50404 -26.91626 -26.16942 -25.25130 -23.82328 -22.84266 -21.35562 -21.16861 -20.43433 -19.43881 -18.54897 -17.59846 -17.47686 -17.11363 -16.81907 -16.70600 -16.46385 -16.19007 -15.93128 -15.64031 -15.49339 -15.24962 -14.88306 -14.59889 -14.37162 -13.72265 -13.68943 -13.43938 -13.31499 -13.24234 -13.11510 -13.08146 -12.75257 -12.55408 -12.39777 -12.37548 -11.98635 -11.85551 -11.64006 -11.34770 -11.08543 -10.92086 -10.80656 -10.58041 -10.54572 -10.10058 -9.65214 -9.16762 -8.58982 -5.40766 0.53035 0.84948 1.36652 1.40075 1.49524 1.64186 2.25455 2.41242 2.56775 2.96849 3.12686 3.20770 3.37100 3.52772 3.70428 3.85531 3.98609 4.13073 4.24883 4.38293 4.38420 4.41682 4.47332 4.48485 4.49226 4.54996 4.63006 4.68697 4.73298 4.74581 4.77761 4.78617 4.82575 4.84968 4.92523 5.16781 5.25167 5.26815 5.33978 5.47034 5.69008 5.88758 6.00036 6.08532 6.42305 6.74321 6.75313 7.39684 7.42879 8.34579 8.93066 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012185 B = 0.003684 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.266101 B = 7597.671037 C = 7966.719167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.405 6.405 3 C 0.141 3.859 4 C 0.106 3.894 5 N -0.308 5.308 6 N -0.351 5.351 7 C 0.084 3.916 8 C 0.129 3.871 9 C -0.306 4.306 10 C 0.587 3.413 11 O -0.587 6.587 12 N -0.703 5.703 13 C 0.173 3.827 14 H 0.039 0.961 15 C -0.147 4.147 16 C -0.104 4.104 17 C 0.121 3.879 18 N -0.660 5.660 19 C -0.285 4.285 20 H 0.044 0.956 21 C -0.091 4.091 22 N -0.975 5.975 23 Si 1.104 2.896 24 H -0.291 1.291 25 H -0.240 1.240 26 H -0.305 1.305 27 C 0.096 3.904 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.131 0.869 35 H 0.094 0.906 36 H 0.241 0.759 37 H 0.415 0.585 38 H 0.090 0.910 39 H 0.036 0.964 40 H 0.061 0.939 41 H 0.141 0.859 42 H 0.047 0.953 43 H 0.067 0.933 44 H 0.244 0.756 45 H 0.070 0.930 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.230 -15.985 19.576 29.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.323 6.323 3 C 0.063 3.937 4 C -0.060 4.060 5 N -0.132 5.132 6 N -0.129 5.129 7 C -0.054 4.054 8 C -0.023 4.023 9 C -0.321 4.321 10 C 0.376 3.624 11 O -0.468 6.468 12 N -0.355 5.355 13 C 0.068 3.932 14 H 0.057 0.943 15 C -0.205 4.205 16 C -0.123 4.123 17 C -0.004 4.004 18 N -0.389 5.389 19 C -0.413 4.413 20 H 0.062 0.938 21 C -0.282 4.282 22 N -0.621 5.621 23 Si 0.929 3.071 24 H -0.218 1.218 25 H -0.164 1.164 26 H -0.233 1.233 27 C -0.029 4.029 28 H 0.121 0.879 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.149 0.851 35 H 0.113 0.887 36 H 0.257 0.743 37 H 0.253 0.747 38 H 0.109 0.891 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.158 0.842 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.053 0.947 45 H 0.087 0.913 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 14.929 -14.624 21.453 29.950 hybrid contribution -1.406 -0.650 -2.198 2.689 sum 13.524 -15.274 19.255 28.052 Atomic orbital electron populations 1.22919 0.78979 1.04034 1.00729 1.87823 1.21764 1.27110 1.95599 1.20623 0.85732 0.85681 1.01682 1.22018 0.95824 0.98037 0.90162 1.77079 0.88243 1.25358 1.22529 1.48762 1.06135 1.52227 1.05816 1.22519 0.82767 1.05506 0.94614 1.23749 0.98741 0.94510 0.85334 1.20244 0.94163 1.24626 0.93114 1.17590 0.85285 0.74977 0.84596 1.90749 1.18934 1.52212 1.84912 1.45593 1.10355 1.74792 1.04770 1.20331 0.96166 0.97008 0.79712 0.94270 1.22005 1.02053 0.95513 1.00916 1.22991 0.99345 0.94937 0.95058 1.22697 0.96908 0.86082 0.94690 1.46301 1.40333 1.17239 1.35021 1.19951 1.08468 0.93445 1.19404 0.93793 1.27089 1.02981 0.94162 1.03980 1.71002 1.09631 1.42266 1.39226 0.83321 0.74958 0.74401 0.74404 1.21819 1.16370 1.23321 1.23018 0.93482 0.96353 0.90035 0.87917 0.92182 0.94434 0.90798 0.91589 0.88405 0.85107 0.88744 0.74312 0.74692 0.89116 0.94433 0.92051 0.84168 0.93472 0.91582 0.94722 0.91287 0.95016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 16 2 O -0.40 -12.78 10.69 -148.98 -1.59 -14.37 16 3 C 0.14 4.37 5.97 71.24 0.43 4.80 16 4 C 0.11 3.20 6.89 43.52 0.30 3.50 16 5 N -0.31 -8.07 12.50 -46.68 -0.58 -8.65 16 6 N -0.35 -5.78 3.98 -367.80 -1.46 -7.24 16 7 C 0.08 0.41 11.44 127.77 1.46 1.87 16 8 C 0.13 1.99 10.99 84.28 0.93 2.92 16 9 C -0.31 -8.27 6.13 -20.15 -0.12 -8.39 16 10 C 0.59 19.27 7.78 86.66 0.67 19.94 16 11 O -0.59 -25.57 14.58 -4.05 -0.06 -25.63 16 12 N -0.70 -17.94 5.07 -445.80 -2.26 -20.20 16 13 C 0.17 5.46 2.43 44.99 0.11 5.57 16 14 H 0.04 1.78 7.36 -2.39 -0.02 1.76 16 15 C -0.15 -4.03 9.29 71.98 0.67 -3.36 16 16 C -0.10 -2.89 3.73 -10.37 -0.04 -2.93 16 17 C 0.12 4.23 8.08 83.18 0.67 4.90 16 18 N -0.66 -31.67 3.42 -737.93 -2.53 -34.19 16 19 C -0.28 -17.17 11.03 84.03 0.93 -16.24 16 20 H 0.04 2.88 8.06 -2.91 -0.02 2.86 16 21 C -0.09 -5.69 5.50 84.86 0.47 -5.23 16 22 N -0.98 -66.39 13.70 21.65 0.30 -66.10 16 23 Si 1.10 55.25 25.50 68.60 1.75 57.00 16 24 H -0.29 -14.22 6.97 99.48 0.69 -13.53 16 25 H -0.24 -10.16 5.66 99.48 0.56 -9.60 16 26 H -0.30 -15.53 7.11 99.48 0.71 -14.83 16 27 C 0.10 3.62 5.15 83.26 0.43 4.04 16 28 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 2.35 6.55 -2.39 -0.02 2.33 16 33 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.13 -0.30 8.14 -2.39 -0.02 -0.32 16 35 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.24 0.72 7.46 -2.91 -0.02 0.70 16 37 H 0.42 6.14 7.53 -92.71 -0.70 5.44 16 38 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 1.76 6.49 -2.39 -0.02 1.75 16 41 H 0.14 2.29 8.14 -2.38 -0.02 2.27 16 42 H 0.05 1.66 6.43 -2.39 -0.02 1.65 16 43 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.24 16.71 8.73 -92.71 -0.81 15.90 16 45 H 0.07 2.33 7.02 -2.38 -0.02 2.31 16 46 H 0.03 1.34 6.21 -2.39 -0.01 1.32 16 Total: -1.00 -96.32 375.99 1.81 -94.52 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.10 Total: 11.54 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 8.15 Total: 13.33 kcal Atomic # 7 Polarization: -129.85 SS G_CDS: -6.54 Total: -136.38 kcal Atomic # 8 Polarization: -38.36 SS G_CDS: -1.65 Total: -40.01 kcal Atomic # 14 Polarization: 55.25 SS G_CDS: 1.75 Total: 57.00 kcal Total: -96.32 1.81 -94.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969992050.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.495 kcal (2) G-P(sol) polarization free energy of solvation -96.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds