Wall clock time and date at job start Fri Apr 10 2020 18:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47053 * 2 1 4 4 N 1.46494 * 109.47105 * 239.99349 * 2 1 3 5 5 C 1.34781 * 119.99863 * 85.00356 * 4 2 1 6 6 O 1.21495 * 120.00060 * 359.97438 * 5 4 2 7 7 C 1.48326 * 120.00250 * 179.97438 * 5 4 2 8 8 C 1.42271 * 126.94251 * 180.02562 * 7 5 4 9 9 C 1.35313 * 103.92273 * 180.02562 * 8 7 5 10 10 C 1.50705 * 126.66271 * 179.97438 * 9 8 7 11 11 N 1.46900 * 109.47268 * 89.99819 * 10 9 8 12 12 C 1.46894 * 111.00073 * 169.99642 * 11 10 9 13 13 C 1.46898 * 110.99734 * 293.95267 * 11 10 9 14 14 O 1.34013 * 106.67053 * 359.97438 * 9 8 7 15 15 N 1.20904 * 111.84507 * 359.70434 * 14 9 8 16 16 C 1.53000 * 109.46774 * 119.99801 * 2 1 3 17 17 C 1.53498 * 114.20476 * 299.99885 * 16 2 1 18 18 N 1.47072 * 87.98531 * 87.52370 * 17 16 2 19 19 C 1.36937 * 136.05474 * 207.08946 * 18 17 16 20 20 H 1.07997 * 120.00175 * 6.65345 * 19 18 17 21 21 C 1.38812 * 119.99799 * 186.65772 * 19 18 17 22 22 N 1.31617 * 119.99791 * 6.44001 * 21 19 18 23 23 Si 1.86796 * 120.00183 * 186.44246 * 21 19 18 24 24 H 1.48498 * 109.47075 * 265.01704 * 23 21 19 25 25 H 1.48500 * 109.46850 * 25.01427 * 23 21 19 26 26 H 1.48496 * 109.47374 * 145.01871 * 23 21 19 27 27 C 1.47066 * 87.88224 * 27.34172 * 18 17 16 28 28 H 1.08995 * 109.47689 * 300.00395 * 1 2 3 29 29 H 1.08999 * 109.46965 * 60.00649 * 1 2 3 30 30 H 1.09004 * 109.47240 * 179.97438 * 1 2 3 31 31 H 0.97005 * 120.00380 * 264.99872 * 4 2 1 32 32 H 1.08003 * 128.03875 * 359.97438 * 8 7 5 33 33 H 1.09003 * 109.46640 * 209.99453 * 10 9 8 34 34 H 1.08998 * 109.47450 * 329.99466 * 10 9 8 35 35 H 1.09000 * 109.46960 * 60.00194 * 12 11 10 36 36 H 1.09005 * 109.47253 * 179.97438 * 12 11 10 37 37 H 1.08999 * 109.47585 * 299.99905 * 12 11 10 38 38 H 1.09003 * 109.47042 * 60.00227 * 13 11 10 39 39 H 1.09004 * 109.47300 * 179.97438 * 13 11 10 40 40 H 1.08994 * 109.47484 * 299.99669 * 13 11 10 41 41 H 1.08994 * 113.41432 * 166.80325 * 16 2 1 42 42 H 1.09000 * 113.47213 * 332.73897 * 17 16 2 43 43 H 1.09002 * 113.52190 * 202.30784 * 17 16 2 44 44 H 0.97000 * 119.99892 * 179.97438 * 22 21 19 45 45 H 1.09000 * 113.46757 * 87.44265 * 27 18 17 46 46 H 1.08999 * 113.46471 * 217.87772 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1471 -0.0184 -2.3571 6 8 1.8578 1.1603 -2.4119 7 6 2.6420 -0.7176 -3.5680 8 6 2.8342 -0.1561 -4.8610 9 6 3.2926 -1.1921 -5.6010 10 6 3.6636 -1.1601 -7.0613 11 7 5.0851 -0.8155 -7.1980 12 6 5.5420 -1.0048 -8.5812 13 6 5.3399 0.5577 -6.7426 14 8 3.3525 -2.2519 -4.7831 15 7 2.9963 -1.9752 -3.6613 16 6 2.0399 -0.7212 1.2493 17 6 1.5897 -0.0845 2.5714 18 7 0.3743 -0.9090 2.4946 19 6 -0.9132 -0.8124 2.9511 20 1 -1.2493 0.0949 3.4309 21 6 -1.7861 -1.8807 2.7972 22 7 -1.3448 -3.0289 2.3291 23 14 -3.5870 -1.6886 3.2543 24 1 -3.7999 -2.1730 4.6418 25 1 -3.9701 -0.2566 3.1657 26 1 -4.4227 -2.4834 2.3189 27 6 1.1518 -1.8858 1.7173 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 2.2491 -1.6319 -1.1524 32 1 2.6550 0.8606 -5.1784 33 1 3.4832 -2.1400 -7.5035 34 1 3.0577 -0.4131 -7.5740 35 1 4.9618 -0.3652 -9.2462 36 1 6.5974 -0.7421 -8.6544 37 1 5.4059 -2.0471 -8.8694 38 1 5.0568 0.6512 -5.6941 39 1 6.3997 0.7868 -6.8542 40 1 4.7524 1.2539 -7.3411 41 1 3.1024 -0.9609 1.2077 42 1 1.3944 0.9851 2.4938 43 1 2.2316 -0.3353 3.4159 44 1 -1.9547 -3.7755 2.2219 45 1 1.6788 -2.6121 2.3360 46 1 0.5833 -2.3509 0.9120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970013370.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:48 Heat of formation + Delta-G solvation = 104.626147 kcal Electronic energy + Delta-G solvation = -27270.027949 eV Core-core repulsion = 23394.055948 eV Total energy + Delta-G solvation = -3875.972001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.21340 -39.81276 -38.41335 -38.06380 -34.54230 -34.09160 -32.66389 -32.13867 -29.69189 -28.09679 -27.77214 -27.71035 -25.12999 -24.70029 -23.85328 -23.09272 -22.45541 -21.29043 -19.87772 -18.67348 -17.97057 -17.60686 -16.82863 -16.71074 -15.84492 -15.77782 -15.64766 -15.28927 -14.95041 -14.65592 -14.63677 -13.99990 -13.80191 -13.59104 -13.50161 -12.90314 -12.60860 -12.43800 -12.34747 -12.25978 -12.09424 -11.84281 -11.58011 -11.24993 -11.12385 -10.98725 -10.76846 -10.60873 -10.52158 -10.39039 -10.11389 -9.85434 -9.80398 -9.71145 -9.19054 -8.93360 -8.74982 -8.72152 -6.82859 -5.78562 -3.08850 1.01692 1.48100 2.69118 3.09653 3.26062 3.38964 3.44967 3.46526 3.51482 3.91424 4.29725 4.46464 4.56244 4.66048 4.78885 4.88334 4.91423 5.08951 5.14287 5.19254 5.26739 5.27538 5.30191 5.38265 5.39917 5.53522 5.54758 5.66056 5.91973 6.03272 6.29914 6.35186 6.36735 6.42027 6.48307 6.62383 6.68907 6.70487 6.98286 7.17340 7.25688 7.44305 7.54242 7.62882 7.93221 7.96506 8.26594 9.03404 9.70201 10.64876 11.39853 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025478 B = 0.002428 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.729998 B =11529.468847 C =11831.925940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.175 3.825 3 H 0.080 0.920 4 N -0.699 5.699 5 C 0.595 3.405 6 O -0.529 6.529 7 C -0.021 4.021 8 C -0.176 4.176 9 C -0.028 4.028 10 C 0.134 3.866 11 N -0.545 5.545 12 C 0.025 3.975 13 C 0.015 3.985 14 O 0.132 5.868 15 N -0.326 5.326 16 C -0.164 4.164 17 C 0.127 3.873 18 N -0.603 5.603 19 C -0.215 4.215 20 H 0.080 0.920 21 C -0.005 4.005 22 N -0.918 5.918 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.280 1.280 26 H -0.290 1.290 27 C 0.165 3.835 28 H 0.090 0.910 29 H 0.030 0.970 30 H 0.071 0.929 31 H 0.405 0.595 32 H 0.178 0.822 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.031 0.969 41 H 0.072 0.928 42 H 0.042 0.958 43 H 0.035 0.965 44 H 0.253 0.747 45 H 0.028 0.972 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.871 4.159 -21.428 25.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.072 3.928 3 H 0.099 0.901 4 N -0.349 5.349 5 C 0.378 3.622 6 O -0.405 6.405 7 C -0.180 4.180 8 C -0.199 4.199 9 C -0.092 4.092 10 C 0.005 3.995 11 N -0.269 5.269 12 C -0.122 4.122 13 C -0.133 4.133 14 O 0.055 5.945 15 N -0.025 5.025 16 C -0.184 4.184 17 C 0.000 4.000 18 N -0.330 5.330 19 C -0.342 4.342 20 H 0.098 0.902 21 C -0.202 4.202 22 N -0.564 5.564 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.205 1.205 26 H -0.217 1.217 27 C 0.039 3.961 28 H 0.109 0.891 29 H 0.049 0.951 30 H 0.090 0.910 31 H 0.240 0.760 32 H 0.195 0.805 33 H 0.121 0.879 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.090 0.910 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.046 0.954 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.577 3.613 -20.130 24.548 hybrid contribution -1.347 0.658 -0.379 1.546 sum 12.230 4.271 -20.509 24.257 Atomic orbital electron populations 1.22172 0.92902 1.04002 1.01402 1.20683 0.95730 0.95295 0.81081 0.90149 1.46088 1.64994 1.14471 1.09394 1.16846 0.78124 0.85838 0.81369 1.90780 1.50638 1.14805 1.84253 1.23622 1.05907 0.91076 0.97440 1.22424 1.04667 1.01569 0.91217 1.24137 1.02736 0.86557 0.95785 1.20501 0.89246 1.03717 0.86025 1.61904 1.16287 1.25693 1.23054 1.22407 1.00967 1.02010 0.86858 1.22546 1.02006 0.87284 1.01469 1.84799 1.61089 1.34839 1.13728 1.74226 1.12795 1.16298 0.99205 1.23383 0.98603 1.01698 0.94671 1.22344 0.89030 0.95802 0.92822 1.45781 1.04181 1.20681 1.62320 1.18873 0.83530 0.98750 1.33058 0.90182 1.24780 0.98282 0.95302 1.01861 1.69838 1.33852 1.01740 1.51014 0.86171 0.84965 0.77398 0.77686 1.21730 1.20502 1.21675 1.22085 0.89331 0.90587 0.94084 0.89135 0.95136 0.91035 0.76000 0.80475 0.87851 0.90803 0.95180 0.90771 0.90804 0.90811 0.90844 0.94998 0.90998 0.93958 0.94715 0.93697 0.95386 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.06 37.16 0.30 -2.76 16 2 C 0.17 3.18 2.76 -67.93 -0.19 2.99 16 3 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 4 N -0.70 -11.65 5.07 -54.60 -0.28 -11.93 16 5 C 0.60 10.01 7.81 -12.11 -0.09 9.92 16 6 O -0.53 -10.14 16.62 5.37 0.09 -10.05 16 7 C -0.02 -0.30 7.19 -82.53 -0.59 -0.90 16 8 C -0.18 -1.97 9.58 -39.08 -0.37 -2.35 16 9 C -0.03 -0.27 6.34 -35.35 -0.22 -0.50 16 10 C 0.13 0.84 5.52 -4.97 -0.03 0.81 16 11 N -0.54 -3.66 5.01 -252.72 -1.27 -4.93 16 12 C 0.03 0.11 9.57 60.06 0.57 0.69 16 13 C 0.01 0.10 9.29 60.06 0.56 0.65 16 14 O 0.13 1.58 11.18 17.25 0.19 1.77 16 15 N -0.33 -4.57 11.84 33.29 0.39 -4.18 16 16 C -0.16 -2.99 4.25 -89.97 -0.38 -3.38 16 17 C 0.13 2.54 7.86 -8.51 -0.07 2.48 16 18 N -0.60 -14.81 2.16 -184.59 -0.40 -15.21 16 19 C -0.21 -5.82 9.57 -15.06 -0.14 -5.97 16 20 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 21 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 22 N -0.92 -26.82 11.81 55.49 0.66 -26.16 16 23 Si 0.91 22.07 29.56 -169.99 -5.02 17.04 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 C 0.17 3.73 6.22 -8.38 -0.05 3.68 16 28 H 0.09 2.04 5.93 -51.93 -0.31 1.73 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.68 6.32 -51.93 -0.33 1.35 16 31 H 0.41 6.38 8.36 -40.82 -0.34 6.03 16 32 H 0.18 1.70 8.06 -52.48 -0.42 1.28 16 33 H 0.10 0.49 8.06 -51.93 -0.42 0.08 16 34 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 35 H 0.03 0.11 8.14 -51.93 -0.42 -0.31 16 36 H 0.07 0.30 8.12 -51.93 -0.42 -0.13 16 37 H 0.07 0.27 8.12 -51.93 -0.42 -0.15 16 38 H 0.07 0.58 6.34 -51.93 -0.33 0.26 16 39 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 40 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.06 1.60 6.17 -51.93 -0.32 1.28 16 LS Contribution 376.50 15.07 5.67 5.67 Total: -1.00 -32.07 376.50 -7.82 -39.89 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -7.05 Total: 2.94 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -0.81 Total: 5.13 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: -0.89 Total: -62.40 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.28 Total: -8.28 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.07 -7.82 -39.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970013370.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.521 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds