Wall clock time and date at job start Fri Apr 10 2020 18:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47053 * 2 1 4 4 N 1.46494 * 109.47105 * 239.99349 * 2 1 3 5 5 C 1.34781 * 119.99863 * 85.00356 * 4 2 1 6 6 O 1.21495 * 120.00060 * 359.97438 * 5 4 2 7 7 C 1.48326 * 120.00250 * 179.97438 * 5 4 2 8 8 C 1.42271 * 126.94251 * 180.02562 * 7 5 4 9 9 C 1.35313 * 103.92273 * 180.02562 * 8 7 5 10 10 C 1.50705 * 126.66271 * 179.97438 * 9 8 7 11 11 N 1.46900 * 109.47268 * 89.99819 * 10 9 8 12 12 C 1.46894 * 111.00073 * 169.99642 * 11 10 9 13 13 C 1.46898 * 110.99734 * 293.95267 * 11 10 9 14 14 O 1.34013 * 106.67053 * 359.97438 * 9 8 7 15 15 N 1.20904 * 111.84507 * 359.70434 * 14 9 8 16 16 C 1.53000 * 109.46774 * 119.99801 * 2 1 3 17 17 C 1.53498 * 114.20476 * 299.99885 * 16 2 1 18 18 N 1.47072 * 87.98531 * 87.52370 * 17 16 2 19 19 C 1.36937 * 136.05474 * 207.08946 * 18 17 16 20 20 H 1.07997 * 120.00175 * 6.65345 * 19 18 17 21 21 C 1.38812 * 119.99799 * 186.65772 * 19 18 17 22 22 N 1.31617 * 119.99791 * 6.44001 * 21 19 18 23 23 Si 1.86796 * 120.00183 * 186.44246 * 21 19 18 24 24 H 1.48498 * 109.47075 * 265.01704 * 23 21 19 25 25 H 1.48500 * 109.46850 * 25.01427 * 23 21 19 26 26 H 1.48496 * 109.47374 * 145.01871 * 23 21 19 27 27 C 1.47066 * 87.88224 * 27.34172 * 18 17 16 28 28 H 1.08995 * 109.47689 * 300.00395 * 1 2 3 29 29 H 1.08999 * 109.46965 * 60.00649 * 1 2 3 30 30 H 1.09004 * 109.47240 * 179.97438 * 1 2 3 31 31 H 0.97005 * 120.00380 * 264.99872 * 4 2 1 32 32 H 1.08003 * 128.03875 * 359.97438 * 8 7 5 33 33 H 1.09003 * 109.46640 * 209.99453 * 10 9 8 34 34 H 1.08998 * 109.47450 * 329.99466 * 10 9 8 35 35 H 1.09000 * 109.46960 * 60.00194 * 12 11 10 36 36 H 1.09005 * 109.47253 * 179.97438 * 12 11 10 37 37 H 1.08999 * 109.47585 * 299.99905 * 12 11 10 38 38 H 1.09003 * 109.47042 * 60.00227 * 13 11 10 39 39 H 1.09004 * 109.47300 * 179.97438 * 13 11 10 40 40 H 1.08994 * 109.47484 * 299.99669 * 13 11 10 41 41 H 1.08994 * 113.41432 * 166.80325 * 16 2 1 42 42 H 1.09000 * 113.47213 * 332.73897 * 17 16 2 43 43 H 1.09002 * 113.52190 * 202.30784 * 17 16 2 44 44 H 0.97000 * 119.99892 * 179.97438 * 22 21 19 45 45 H 1.09000 * 113.46757 * 87.44265 * 27 18 17 46 46 H 1.08999 * 113.46471 * 217.87772 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1471 -0.0184 -2.3571 6 8 1.8578 1.1603 -2.4119 7 6 2.6420 -0.7176 -3.5680 8 6 2.8342 -0.1561 -4.8610 9 6 3.2926 -1.1921 -5.6010 10 6 3.6636 -1.1601 -7.0613 11 7 5.0851 -0.8155 -7.1980 12 6 5.5420 -1.0048 -8.5812 13 6 5.3399 0.5577 -6.7426 14 8 3.3525 -2.2519 -4.7831 15 7 2.9963 -1.9752 -3.6613 16 6 2.0399 -0.7212 1.2493 17 6 1.5897 -0.0845 2.5714 18 7 0.3743 -0.9090 2.4946 19 6 -0.9132 -0.8124 2.9511 20 1 -1.2493 0.0949 3.4309 21 6 -1.7861 -1.8807 2.7972 22 7 -1.3448 -3.0289 2.3291 23 14 -3.5870 -1.6886 3.2543 24 1 -3.7999 -2.1730 4.6418 25 1 -3.9701 -0.2566 3.1657 26 1 -4.4227 -2.4834 2.3189 27 6 1.1518 -1.8858 1.7173 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 2.2491 -1.6319 -1.1524 32 1 2.6550 0.8606 -5.1784 33 1 3.4832 -2.1400 -7.5035 34 1 3.0577 -0.4131 -7.5740 35 1 4.9618 -0.3652 -9.2462 36 1 6.5974 -0.7421 -8.6544 37 1 5.4059 -2.0471 -8.8694 38 1 5.0568 0.6512 -5.6941 39 1 6.3997 0.7868 -6.8542 40 1 4.7524 1.2539 -7.3411 41 1 3.1024 -0.9609 1.2077 42 1 1.3944 0.9851 2.4938 43 1 2.2316 -0.3353 3.4159 44 1 -1.9547 -3.7755 2.2219 45 1 1.6788 -2.6121 2.3360 46 1 0.5833 -2.3509 0.9120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970013370.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:47 Heat of formation + Delta-G solvation = 82.450845 kcal Electronic energy + Delta-G solvation = -27270.989542 eV Core-core repulsion = 23394.055948 eV Total energy + Delta-G solvation = -3876.933595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -46.19582 -41.31418 -39.99522 -38.53876 -36.05844 -35.10707 -34.19975 -33.44420 -31.27087 -29.63236 -28.57974 -28.29690 -26.57398 -26.39218 -25.47401 -23.94726 -23.36588 -22.72237 -21.15566 -20.16512 -18.94653 -18.78886 -18.47042 -17.95822 -17.17636 -16.90172 -16.42194 -16.25927 -16.21811 -16.07269 -15.83018 -15.67868 -15.08445 -14.73918 -14.52264 -14.12482 -13.94952 -13.58543 -13.30688 -13.09212 -12.96610 -12.85954 -12.80923 -12.75982 -12.61368 -12.54092 -12.43029 -12.37397 -12.14139 -11.71477 -11.57685 -11.54345 -11.51226 -10.93588 -10.76300 -10.64911 -10.22096 -9.36410 -8.82206 -7.89632 -5.18939 0.00878 0.56659 1.44559 1.45468 1.54103 1.75759 1.98047 2.01361 2.48122 2.83673 3.05341 3.34060 3.42460 3.53820 3.65945 3.83538 3.87223 4.03028 4.10973 4.26753 4.30713 4.45640 4.46543 4.53572 4.60719 4.66545 4.75995 4.77771 4.78977 4.85875 4.86203 4.98616 5.02358 5.04389 5.06240 5.13542 5.23817 5.39784 5.50671 5.57424 5.68587 5.92443 5.94106 6.01967 6.28990 6.87372 6.93972 7.01761 7.63587 8.64852 9.29104 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025478 B = 0.002428 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.729998 B =11529.468847 C =11831.925940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.184 3.816 3 H 0.089 0.911 4 N -0.697 5.697 5 C 0.597 3.403 6 O -0.555 6.555 7 C -0.045 4.045 8 C -0.180 4.180 9 C -0.008 4.008 10 C 0.133 3.867 11 N -0.562 5.562 12 C 0.026 3.974 13 C 0.015 3.985 14 O 0.136 5.864 15 N -0.344 5.344 16 C -0.132 4.132 17 C 0.127 3.873 18 N -0.629 5.629 19 C -0.213 4.213 20 H 0.083 0.917 21 C -0.063 4.063 22 N -0.950 5.950 23 Si 0.966 3.034 24 H -0.289 1.289 25 H -0.268 1.268 26 H -0.298 1.298 27 C 0.164 3.836 28 H 0.072 0.928 29 H 0.028 0.972 30 H 0.039 0.961 31 H 0.410 0.590 32 H 0.192 0.808 33 H 0.122 0.878 34 H 0.096 0.904 35 H 0.040 0.960 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.043 0.957 41 H 0.107 0.893 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.246 0.754 45 H 0.017 0.983 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.156 5.103 -23.141 28.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.080 3.920 3 H 0.107 0.893 4 N -0.347 5.347 5 C 0.382 3.618 6 O -0.433 6.433 7 C -0.203 4.203 8 C -0.203 4.203 9 C -0.072 4.072 10 C 0.005 3.995 11 N -0.287 5.287 12 C -0.121 4.121 13 C -0.133 4.133 14 O 0.058 5.942 15 N -0.042 5.042 16 C -0.152 4.152 17 C 0.001 3.999 18 N -0.355 5.355 19 C -0.341 4.341 20 H 0.101 0.899 21 C -0.256 4.256 22 N -0.599 5.599 23 Si 0.796 3.204 24 H -0.217 1.217 25 H -0.193 1.193 26 H -0.225 1.225 27 C 0.038 3.962 28 H 0.091 0.909 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.246 0.754 32 H 0.209 0.791 33 H 0.140 0.860 34 H 0.114 0.886 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.124 0.876 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.054 0.946 45 H 0.035 0.965 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.891 4.580 -21.830 26.819 hybrid contribution -1.660 0.385 0.064 1.706 sum 13.230 4.965 -21.766 25.951 Atomic orbital electron populations 1.21943 0.95063 1.01449 1.00379 1.20475 0.93766 0.95914 0.81805 0.89290 1.45979 1.64942 1.14649 1.09161 1.17110 0.77321 0.85580 0.81822 1.90755 1.51813 1.15929 1.84779 1.23436 1.07553 0.91704 0.97573 1.22615 1.04985 1.02636 0.90059 1.24746 1.00648 0.85094 0.96742 1.20747 0.89610 1.05566 0.83575 1.61880 1.16408 1.25801 1.24655 1.22451 1.01218 1.02799 0.85661 1.22525 1.02535 0.87680 1.00549 1.84767 1.60407 1.35616 1.13457 1.74226 1.13411 1.16260 1.00339 1.23150 0.99568 0.98577 0.93891 1.22518 0.87248 0.96091 0.94024 1.46046 1.04800 1.22105 1.62584 1.19177 0.85039 0.98487 1.31403 0.89917 1.25487 1.01865 0.95330 1.02949 1.70001 1.34604 1.02297 1.53038 0.85230 0.80681 0.77597 0.76920 1.21656 1.19298 1.22509 1.22028 0.89643 0.91441 0.93097 0.90909 0.95254 0.94215 0.75440 0.79066 0.85989 0.88641 0.94102 0.90543 0.90009 0.92616 0.90406 0.93853 0.87554 0.92625 0.93082 0.94553 0.96480 0.94511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.50 8.06 71.98 0.58 -4.92 16 2 C 0.18 6.54 2.76 44.99 0.12 6.67 16 3 H 0.09 3.11 7.58 -2.39 -0.02 3.09 16 4 N -0.70 -22.94 5.07 -444.96 -2.26 -25.20 16 5 C 0.60 19.86 7.81 86.93 0.68 20.54 16 6 O -0.56 -21.03 16.62 -3.70 -0.06 -21.09 16 7 C -0.05 -1.27 7.19 42.96 0.31 -0.96 16 8 C -0.18 -3.79 9.58 22.60 0.22 -3.57 16 9 C -0.01 -0.14 6.34 25.01 0.16 0.01 16 10 C 0.13 1.27 5.52 85.56 0.47 1.75 16 11 N -0.56 -6.12 5.01 -953.48 -4.78 -10.90 16 12 C 0.03 0.15 9.57 127.69 1.22 1.38 16 13 C 0.02 0.16 9.29 127.69 1.19 1.35 16 14 O 0.14 3.08 11.18 71.91 0.80 3.88 16 15 N -0.34 -9.44 11.84 -49.51 -0.59 -10.03 16 16 C -0.13 -4.65 4.25 -10.37 -0.04 -4.70 16 17 C 0.13 4.87 7.86 83.18 0.65 5.52 16 18 N -0.63 -30.93 2.16 -737.93 -1.60 -32.53 16 19 C -0.21 -11.62 9.57 84.03 0.80 -10.82 16 20 H 0.08 4.36 7.84 -2.91 -0.02 4.34 16 21 C -0.06 -3.57 5.50 84.86 0.47 -3.11 16 22 N -0.95 -57.22 11.81 21.65 0.26 -56.96 16 23 Si 0.97 46.16 29.56 68.60 2.03 48.19 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 26 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 27 C 0.16 7.49 6.22 83.26 0.52 8.01 16 28 H 0.07 3.31 5.93 -2.39 -0.01 3.30 16 29 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.04 1.92 6.32 -2.38 -0.02 1.90 16 31 H 0.41 12.82 8.36 -92.70 -0.78 12.05 16 32 H 0.19 3.37 8.06 -2.91 -0.02 3.34 16 33 H 0.12 0.75 8.06 -2.39 -0.02 0.73 16 34 H 0.10 0.56 8.12 -2.39 -0.02 0.54 16 35 H 0.04 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.08 0.43 8.12 -2.38 -0.02 0.41 16 37 H 0.08 0.36 8.12 -2.39 -0.02 0.34 16 38 H 0.05 0.81 6.34 -2.39 -0.02 0.79 16 39 H 0.08 0.75 8.12 -2.38 -0.02 0.73 16 40 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 42 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 43 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 44 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 45 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.04 1.88 6.17 -2.39 -0.01 1.87 16 Total: -1.00 -70.46 376.50 1.37 -69.09 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.22 Total: 18.40 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 7.35 Total: 17.15 kcal Atomic # 7 Polarization: -126.65 SS G_CDS: -8.96 Total: -135.62 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.74 Total: -17.21 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -70.46 1.37 -69.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970013370.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.536 kcal (2) G-P(sol) polarization free energy of solvation -70.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds