Wall clock time and date at job start Fri Apr 10 2020 18:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46900 * 2 1 4 4 N 1.46506 * 109.47274 * 119.99943 * 2 1 3 5 5 C 1.34776 * 120.00011 * 274.99948 * 4 2 1 6 6 O 1.21495 * 119.99791 * 0.02562 * 5 4 2 7 7 C 1.48326 * 119.99834 * 179.97438 * 5 4 2 8 8 C 1.42274 * 126.93640 * 180.02562 * 7 5 4 9 9 C 1.35315 * 103.92180 * 179.75467 * 8 7 5 10 10 C 1.50697 * 126.66751 * 180.20147 * 9 8 7 11 11 N 1.46900 * 109.47036 * 90.00924 * 10 9 8 12 12 C 1.46900 * 111.00202 * 170.00109 * 11 10 9 13 13 C 1.46907 * 110.99736 * 293.95409 * 11 10 9 14 14 O 1.34021 * 106.66856 * 0.22972 * 9 8 7 15 15 N 1.20907 * 111.84549 * 359.97438 * 14 9 8 16 16 C 1.52998 * 109.47468 * 240.00569 * 2 1 3 17 17 C 1.53940 * 113.74526 * 158.74114 * 16 2 1 18 18 N 1.47813 * 86.03661 * 222.08200 * 17 16 2 19 19 C 1.36938 * 134.45754 * 204.64600 * 18 17 16 20 20 H 1.08000 * 120.00000 * 179.86140 * 19 18 17 21 21 C 1.38815 * 119.99911 * 359.86067 * 19 18 17 22 22 N 1.31617 * 119.99887 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99706 * 179.97438 * 21 19 18 24 24 H 1.48490 * 109.47252 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46593 * 120.00352 * 23 21 19 26 26 H 1.48494 * 109.47201 * 239.99908 * 23 21 19 27 27 C 1.47583 * 91.04876 * 24.54510 * 18 17 16 28 28 H 1.09004 * 109.47554 * 299.99810 * 1 2 3 29 29 H 1.08999 * 109.47560 * 59.99957 * 1 2 3 30 30 H 1.09001 * 109.46900 * 180.02562 * 1 2 3 31 31 H 0.96994 * 119.99688 * 95.00741 * 4 2 1 32 32 H 1.08002 * 128.04301 * 0.02562 * 8 7 5 33 33 H 1.09004 * 109.47110 * 210.00314 * 10 9 8 34 34 H 1.09002 * 109.47127 * 330.00625 * 10 9 8 35 35 H 1.09002 * 109.46811 * 59.99892 * 12 11 10 36 36 H 1.09000 * 109.46961 * 179.97438 * 12 11 10 37 37 H 1.08996 * 109.46809 * 299.99634 * 12 11 10 38 38 H 1.08999 * 109.46781 * 59.99689 * 13 11 10 39 39 H 1.08999 * 109.47181 * 180.02562 * 13 11 10 40 40 H 1.09000 * 109.46901 * 299.99832 * 13 11 10 41 41 H 1.09009 * 112.93963 * 290.33093 * 16 2 1 42 42 H 1.09002 * 113.76957 * 336.34269 * 17 16 2 43 43 H 1.08998 * 113.77377 * 107.74215 * 17 16 2 44 44 H 0.97005 * 119.99937 * 179.97438 * 22 21 19 45 45 H 1.09000 * 113.77253 * 221.15038 * 27 18 17 46 46 H 1.09005 * 113.86619 * 89.77183 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0183 2.3572 6 8 1.8577 1.1605 2.4118 7 6 2.6410 -0.7176 3.5683 8 6 2.8320 -0.1562 4.8616 9 6 3.2851 -1.1935 5.6031 10 6 3.6493 -1.1633 7.0651 11 7 2.4646 -1.4859 7.8716 12 6 2.8278 -1.6990 9.2789 13 6 1.4407 -0.4400 7.7448 14 8 3.3475 -2.2529 4.7846 15 7 2.9915 -1.9762 3.6627 16 6 2.0400 -0.7211 -1.2493 17 6 3.4848 -0.3519 -1.6316 18 7 2.9978 -0.3174 -3.0268 19 6 3.5875 -0.4754 -4.2526 20 1 2.9927 -0.4035 -5.1512 21 6 4.9496 -0.7280 -4.3402 22 7 5.6743 -0.8161 -3.2450 23 14 5.7538 -0.9443 -6.0123 24 1 4.7287 -0.8004 -7.0769 25 1 6.8040 0.0899 -6.1939 26 1 6.3683 -2.2935 -6.0953 27 6 1.6213 -0.0471 -2.5684 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 2.2491 -1.6317 1.1526 32 1 2.6526 0.8604 5.1790 33 1 4.4319 -1.8966 7.2598 34 1 4.0091 -0.1689 7.3295 35 1 3.2857 -0.7935 9.6771 36 1 1.9323 -1.9358 9.8535 37 1 3.5348 -2.5255 9.3505 38 1 1.1395 -0.3512 6.7010 39 1 0.5749 -0.7036 8.3521 40 1 1.8485 0.5110 8.0874 41 1 1.8529 -1.7948 -1.2263 42 1 3.8047 0.6192 -1.2539 43 1 4.2071 -1.1445 -1.4366 44 1 6.6261 -0.9930 -3.3062 45 1 0.8586 -0.5968 -3.1199 46 1 1.3908 1.0134 -2.4661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970013371.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:54 Heat of formation + Delta-G solvation = 91.842964 kcal Electronic energy + Delta-G solvation = -26865.174566 eV Core-core repulsion = 22988.648244 eV Total energy + Delta-G solvation = -3876.526322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -45.23582 -39.76390 -38.07824 -38.04890 -34.88646 -34.13503 -32.73795 -32.11202 -30.37007 -28.11259 -27.78644 -27.51755 -25.45370 -24.53061 -23.76512 -23.11472 -22.46275 -21.10115 -20.16188 -18.97305 -17.99806 -17.76118 -16.86043 -16.69951 -16.11080 -15.79779 -15.76549 -15.29101 -14.90531 -14.78197 -14.35802 -13.93357 -13.82993 -13.50636 -13.49211 -13.08623 -12.91251 -12.47377 -12.35795 -12.28010 -12.16301 -12.10258 -11.67333 -11.63305 -11.35342 -11.28892 -10.91571 -10.73290 -10.56573 -10.36082 -10.21484 -9.83715 -9.82058 -9.75967 -9.40926 -8.94583 -8.88770 -8.78727 -6.85923 -5.74802 -3.07220 0.98756 1.44927 2.66685 3.01243 3.19352 3.40053 3.45032 3.47889 3.50177 3.87069 4.26020 4.46367 4.55065 4.64806 4.76120 4.86847 4.90140 5.04302 5.07990 5.13227 5.21220 5.26037 5.26775 5.28476 5.39285 5.51568 5.53748 5.63521 5.64553 5.77840 5.94448 6.01186 6.21774 6.33989 6.34136 6.39453 6.40776 6.55404 6.64199 6.76952 7.25172 7.37402 7.49639 7.58142 7.88712 7.99808 8.17227 9.06337 9.72717 10.61828 11.42329 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022249 B = 0.002335 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.208879 B =11987.472703 C =12871.961595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.150 3.850 3 H 0.091 0.909 4 N -0.699 5.699 5 C 0.597 3.403 6 O -0.528 6.528 7 C -0.022 4.022 8 C -0.175 4.175 9 C -0.027 4.027 10 C 0.133 3.867 11 N -0.545 5.545 12 C 0.025 3.975 13 C 0.015 3.985 14 O 0.133 5.867 15 N -0.325 5.325 16 C -0.148 4.148 17 C 0.170 3.830 18 N -0.613 5.613 19 C -0.222 4.222 20 H 0.080 0.920 21 C -0.010 4.010 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.131 3.869 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.406 0.594 32 H 0.178 0.822 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.030 0.970 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.032 0.968 41 H 0.089 0.911 42 H 0.026 0.974 43 H 0.072 0.928 44 H 0.253 0.747 45 H 0.045 0.955 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.709 -1.166 25.621 26.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.109 0.891 4 N -0.349 5.349 5 C 0.381 3.619 6 O -0.403 6.403 7 C -0.181 4.181 8 C -0.199 4.199 9 C -0.091 4.091 10 C 0.005 3.995 11 N -0.269 5.269 12 C -0.122 4.122 13 C -0.133 4.133 14 O 0.056 5.944 15 N -0.025 5.025 16 C -0.168 4.168 17 C 0.045 3.955 18 N -0.339 5.339 19 C -0.350 4.350 20 H 0.098 0.902 21 C -0.206 4.206 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.217 1.217 27 C 0.005 3.995 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.241 0.759 32 H 0.196 0.804 33 H 0.122 0.878 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.050 0.950 41 H 0.107 0.893 42 H 0.044 0.956 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.841 -1.785 24.270 25.567 hybrid contribution 0.914 1.037 -0.251 1.405 sum -6.927 -0.748 24.019 25.009 Atomic orbital electron populations 1.22139 0.95341 1.01971 1.02255 1.21213 0.93711 0.97620 0.82899 0.89141 1.45994 1.65320 1.14511 1.09096 1.16861 0.77903 0.85779 0.81399 1.90784 1.50506 1.14634 1.84366 1.23571 1.06176 0.91068 0.97309 1.22423 1.04554 1.01758 0.91121 1.24141 1.03268 0.86264 0.95417 1.20508 0.93246 1.02526 0.83255 1.61911 1.10172 1.45111 1.09749 1.22409 1.01899 1.00780 0.87163 1.22546 0.95230 0.92172 1.03353 1.84802 1.61100 1.34802 1.13710 1.74220 1.12644 1.16231 0.99371 1.23847 1.01036 0.99792 0.92107 1.22301 0.91358 0.98531 0.83323 1.45994 1.03274 1.82585 1.02009 1.19075 0.91433 1.41502 0.82959 0.90175 1.24800 0.96079 1.02428 0.97301 1.69833 1.06044 1.55233 1.25719 0.86044 0.79295 0.77373 0.83046 1.20451 1.21775 1.21708 1.22482 0.89695 0.96622 0.90724 0.92714 0.91103 0.92577 0.75876 0.80448 0.87812 0.90750 0.95159 0.90778 0.90788 0.90836 0.90858 0.94991 0.89258 0.95604 0.90988 0.93717 0.93669 0.94697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.31 37.16 0.35 -1.83 16 2 C 0.15 2.41 2.38 -67.93 -0.16 2.25 16 3 H 0.09 1.63 7.42 -51.93 -0.39 1.25 16 4 N -0.70 -10.71 5.08 -54.60 -0.28 -10.99 16 5 C 0.60 9.52 7.81 -12.11 -0.09 9.43 16 6 O -0.53 -9.61 16.61 5.37 0.09 -9.53 16 7 C -0.02 -0.31 7.19 -82.53 -0.59 -0.90 16 8 C -0.18 -1.91 9.58 -39.07 -0.37 -2.29 16 9 C -0.03 -0.26 6.34 -35.35 -0.22 -0.48 16 10 C 0.13 0.82 5.52 -4.98 -0.03 0.79 16 11 N -0.54 -3.56 5.01 -252.72 -1.27 -4.83 16 12 C 0.03 0.11 9.57 60.06 0.57 0.68 16 13 C 0.01 0.09 9.29 60.07 0.56 0.65 16 14 O 0.13 1.56 11.18 17.23 0.19 1.75 16 15 N -0.33 -4.44 11.84 33.29 0.39 -4.04 16 16 C -0.15 -2.74 3.47 -89.70 -0.31 -3.05 16 17 C 0.17 4.08 7.08 -2.84 -0.02 4.06 16 18 N -0.61 -16.01 3.70 -177.71 -0.66 -16.66 16 19 C -0.22 -6.36 10.70 -15.06 -0.16 -6.52 16 20 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 21 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 22 N -0.92 -27.93 11.39 55.49 0.63 -27.30 16 23 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 C 0.13 2.67 7.64 -2.97 -0.02 2.65 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.91 7.52 -51.93 -0.39 0.52 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.41 5.84 8.36 -40.82 -0.34 5.50 16 32 H 0.18 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.10 0.49 8.06 -51.93 -0.42 0.07 16 34 H 0.07 0.35 8.12 -51.93 -0.42 -0.08 16 35 H 0.03 0.11 8.14 -51.93 -0.42 -0.32 16 36 H 0.07 0.28 8.12 -51.93 -0.42 -0.14 16 37 H 0.07 0.26 8.12 -51.93 -0.42 -0.16 16 38 H 0.07 0.56 6.34 -51.93 -0.33 0.23 16 39 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 40 H 0.03 0.17 8.14 -51.93 -0.42 -0.26 16 41 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 42 H 0.03 0.65 7.99 -51.93 -0.41 0.24 16 43 H 0.07 1.91 7.16 -51.93 -0.37 1.54 16 44 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 383.55 15.07 5.78 5.78 Total: -1.00 -34.11 383.55 -8.01 -42.12 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.26 Total: 1.11 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -0.61 Total: 5.07 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: -1.18 Total: -63.82 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.28 Total: -7.78 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.11 -8.01 -42.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970013371.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.959 kcal (2) G-P(sol) polarization free energy of solvation -34.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds