Wall clock time and date at job start Fri Apr 10 2020 18:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00334 * 2 1 4 4 C 1.53001 * 109.47055 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46724 * 179.97438 * 4 3 2 6 6 C 1.34257 * 125.74947 * 125.32345 * 5 4 3 7 7 C 1.38045 * 107.41376 * 180.14647 * 6 5 4 8 8 C 1.47430 * 126.41225 * 179.86839 * 7 6 5 9 9 O 1.21601 * 120.00239 * 359.71001 * 8 7 6 10 10 N 1.34777 * 120.00041 * 179.70377 * 8 7 6 11 11 C 1.46505 * 120.00207 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.46918 * 35.00652 * 11 10 8 13 13 C 1.52995 * 109.46965 * 275.00529 * 11 10 8 14 14 C 1.53002 * 109.46769 * 155.00392 * 11 10 8 15 15 C 1.53496 * 114.20179 * 180.02562 * 14 11 10 16 16 N 1.47070 * 87.98352 * 87.52002 * 15 14 11 17 17 C 1.36935 * 136.05550 * 207.07944 * 16 15 14 18 18 H 1.08005 * 120.00172 * 6.50069 * 17 16 15 19 19 C 1.38815 * 119.99990 * 186.49806 * 17 16 15 20 20 N 1.31619 * 119.99663 * 6.42579 * 19 17 16 21 21 Si 1.86800 * 119.99976 * 186.42252 * 19 17 16 22 22 H 1.48495 * 109.47340 * 265.02201 * 21 19 17 23 23 H 1.48498 * 109.46951 * 25.02385 * 21 19 17 24 24 H 1.48498 * 109.46744 * 145.01993 * 21 19 17 25 25 C 1.47064 * 87.88277 * 27.34197 * 16 15 14 26 26 C 1.41283 * 107.17084 * 359.60135 * 7 6 5 27 27 N 1.30449 * 108.02303 * 0.24819 * 26 7 6 28 28 H 1.09006 * 109.47094 * 300.00305 * 1 2 3 29 29 H 1.09002 * 109.46954 * 59.99825 * 1 2 3 30 30 H 1.09002 * 109.47395 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46705 * 59.99702 * 3 2 1 32 32 H 1.08994 * 109.47137 * 300.00434 * 3 2 1 33 33 H 1.09006 * 109.46945 * 60.00533 * 4 3 2 34 34 H 1.08992 * 109.47383 * 299.99919 * 4 3 2 35 35 H 1.07999 * 126.29431 * 359.97438 * 6 5 4 36 36 H 0.96997 * 119.99864 * 0.02562 * 10 8 7 37 37 H 1.09001 * 109.47570 * 60.00269 * 13 11 10 38 38 H 1.09008 * 109.46757 * 179.97438 * 13 11 10 39 39 H 1.09000 * 109.47403 * 299.99826 * 13 11 10 40 40 H 1.08996 * 113.41116 * 46.80608 * 14 11 10 41 41 H 1.09004 * 113.46865 * 332.74440 * 15 14 11 42 42 H 1.08993 * 113.51976 * 202.30849 * 15 14 11 43 43 H 0.97005 * 119.99413 * 179.97438 * 20 19 17 44 44 H 1.09000 * 113.46743 * 87.44096 * 25 16 15 45 45 H 1.08999 * 113.46191 * 217.87327 * 25 16 15 46 46 H 1.08005 * 125.98629 * 180.20551 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0257 2.9838 0.8891 7 6 5.3269 4.2839 0.5360 8 6 6.2628 5.1854 1.2324 9 8 6.8524 4.8015 2.2242 10 7 6.4651 6.4349 0.7696 11 6 7.3947 7.3310 1.4619 12 1 8.2290 6.7527 1.8589 13 6 6.6672 8.0318 2.6110 14 6 7.9220 8.3776 0.4782 15 6 8.9110 9.3774 1.0934 16 7 9.9875 8.4254 0.7807 17 6 11.2241 8.1330 1.2909 18 1 11.5587 8.6078 2.2015 19 6 12.0478 7.2263 0.6378 20 7 11.6957 6.7438 -0.5350 21 14 13.6558 6.6912 1.4235 22 1 14.7643 7.5320 0.9045 23 1 13.5632 6.8488 2.8972 24 1 13.9182 5.2673 1.0934 25 6 9.1541 7.9301 -0.3252 26 6 4.5750 4.5867 -0.6212 27 7 3.8689 3.5344 -0.9306 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.8575 0.6435 -0.8892 34 1 3.8568 0.6438 0.8908 35 1 5.4323 2.4387 1.7280 36 1 5.9945 6.7413 -0.0214 37 1 6.2915 7.2861 3.3117 38 1 7.3590 8.6981 3.1263 39 1 5.8329 8.6101 2.2139 40 1 7.1397 8.8367 -0.1262 41 1 8.7645 9.5310 2.1625 42 1 8.9847 10.3131 0.5394 43 1 12.2715 6.1105 -0.9916 44 1 9.2913 8.4840 -1.2539 45 1 9.2147 6.8508 -0.4647 46 1 4.5829 5.5253 -1.1556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970812721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:07 Heat of formation + Delta-G solvation = 30.110763 kcal Electronic energy + Delta-G solvation = -26762.485838 eV Core-core repulsion = 22883.282608 eV Total energy + Delta-G solvation = -3879.203231 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.42119 -40.79943 -39.54300 -38.96720 -35.99054 -34.97189 -34.15410 -31.99012 -31.31390 -29.98842 -29.41834 -27.28686 -26.44186 -25.58106 -24.68295 -24.16306 -22.80272 -21.71630 -21.08198 -20.29711 -18.90683 -18.56424 -17.61920 -17.34848 -17.33502 -16.87329 -16.55849 -16.47277 -15.97970 -15.71986 -15.53122 -15.45016 -15.02815 -14.66160 -14.52359 -14.30300 -14.25213 -13.78139 -13.42955 -13.26786 -13.13209 -13.04978 -12.79794 -12.72108 -12.50850 -12.35909 -12.31732 -12.05015 -11.96698 -11.73953 -11.44740 -11.03312 -10.86027 -10.78938 -10.74278 -10.63144 -10.06554 -9.64116 -8.86977 -7.91269 -5.20548 0.50120 1.16730 1.18671 1.42347 1.45290 1.53870 2.34903 2.48208 2.54981 2.73396 3.32925 3.48670 3.57014 3.69511 3.79052 3.85090 3.88877 3.97489 4.13864 4.18815 4.30070 4.45310 4.48855 4.49046 4.56553 4.62326 4.66647 4.73775 4.77656 4.82409 4.82898 4.88724 4.93057 5.06677 5.25712 5.29390 5.37278 5.41091 5.54233 5.59827 5.75392 5.78552 5.96327 6.02498 6.46947 6.77018 6.93189 7.43955 7.62961 8.65155 9.27895 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018587 B = 0.002428 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.097758 B =11528.515425 C =12269.280949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.059 3.941 4 C 0.129 3.871 5 N -0.358 5.358 6 C 0.134 3.866 7 C -0.309 4.309 8 C 0.590 3.410 9 O -0.598 6.598 10 N -0.703 5.703 11 C 0.178 3.822 12 H 0.041 0.959 13 C -0.146 4.146 14 C -0.118 4.118 15 C 0.124 3.876 16 N -0.642 5.642 17 C -0.222 4.222 18 H 0.083 0.917 19 C -0.072 4.072 20 N -0.953 5.953 21 Si 0.973 3.027 22 H -0.284 1.284 23 H -0.268 1.268 24 H -0.297 1.297 25 C 0.162 3.838 26 C 0.093 3.907 27 N -0.316 5.316 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.131 0.869 35 H 0.203 0.797 36 H 0.412 0.588 37 H 0.042 0.958 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.121 0.879 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.245 0.755 44 H 0.021 0.979 45 H 0.020 0.980 46 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.855 -7.630 0.287 26.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.019 4.019 4 C 0.009 3.991 5 N -0.137 5.137 6 C -0.018 4.018 7 C -0.324 4.324 8 C 0.379 3.621 9 O -0.481 6.481 10 N -0.354 5.354 11 C 0.074 3.926 12 H 0.060 0.940 13 C -0.204 4.204 14 C -0.138 4.138 15 C -0.002 4.002 16 N -0.368 5.368 17 C -0.351 4.351 18 H 0.101 0.899 19 C -0.265 4.265 20 N -0.603 5.603 21 Si 0.802 3.198 22 H -0.211 1.211 23 H -0.193 1.193 24 H -0.224 1.224 25 C 0.036 3.964 26 C -0.094 4.094 27 N -0.135 5.135 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.122 0.878 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.121 0.879 34 H 0.149 0.851 35 H 0.220 0.780 36 H 0.249 0.751 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.139 0.861 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.038 0.962 45 H 0.039 0.961 46 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -25.964 -8.856 0.189 27.433 hybrid contribution 1.713 0.294 0.218 1.752 sum -24.250 -8.562 0.406 25.721 Atomic orbital electron populations 1.22973 0.78652 1.04275 1.00979 1.87756 1.22050 1.27016 1.95686 1.22526 0.92321 0.85273 1.01747 1.21737 0.92771 0.77518 1.07117 1.48467 1.32408 1.12579 1.20264 1.23272 0.90115 0.94048 0.94356 1.20220 1.10885 0.96792 1.04466 1.17596 0.80269 0.81442 0.82830 1.90751 1.51825 1.76586 1.28889 1.45628 1.45216 1.12695 1.31856 1.20294 0.90670 0.89509 0.92162 0.94031 1.22018 1.01022 1.00166 0.97182 1.23087 0.96324 0.96645 0.97712 1.22647 0.85587 0.92733 0.99189 1.46072 1.16158 1.39851 1.34727 1.19318 0.91106 1.20096 1.04560 0.89877 1.25629 1.02070 1.01506 0.97270 1.70025 1.39274 1.35303 1.15670 0.85127 0.79619 0.76787 0.78285 1.21057 1.19274 1.22432 1.22028 0.86948 0.96944 0.90502 1.24520 0.92272 0.98706 0.93941 1.77110 1.25233 0.97286 1.13908 0.93090 0.93222 0.87818 0.92459 0.92240 0.87891 0.85117 0.77999 0.75073 0.93843 0.91509 0.89645 0.86083 0.92461 0.92989 0.94573 0.96164 0.96119 0.76384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.41 -5.80 10.70 -148.98 -1.59 -7.40 16 3 C 0.06 0.79 6.11 71.98 0.44 1.23 16 4 C 0.13 1.71 6.86 86.38 0.59 2.30 16 5 N -0.36 -6.90 3.65 -346.29 -1.26 -8.16 16 6 C 0.13 2.96 11.25 84.28 0.95 3.90 16 7 C -0.31 -7.95 6.13 -20.15 -0.12 -8.07 16 8 C 0.59 19.50 7.78 86.66 0.67 20.17 16 9 O -0.60 -25.41 16.56 -4.03 -0.07 -25.47 16 10 N -0.70 -20.38 5.07 -445.79 -2.26 -22.64 16 11 C 0.18 6.13 2.43 44.99 0.11 6.24 16 12 H 0.04 1.97 7.36 -2.39 -0.02 1.95 16 13 C -0.15 -4.09 9.29 71.98 0.67 -3.42 16 14 C -0.12 -3.96 3.73 -10.37 -0.04 -4.00 16 15 C 0.12 4.73 8.08 83.17 0.67 5.40 16 16 N -0.64 -33.37 3.57 -738.00 -2.63 -36.00 16 17 C -0.22 -12.94 10.73 84.03 0.90 -12.04 16 18 H 0.08 4.63 7.84 -2.91 -0.02 4.60 16 19 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 20 N -0.95 -60.37 11.81 21.65 0.26 -60.12 16 21 Si 0.97 48.21 29.56 68.60 2.03 50.23 16 22 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 25 C 0.16 7.63 6.77 83.26 0.56 8.19 16 26 C 0.09 1.93 11.50 85.65 0.99 2.92 16 27 N -0.32 -6.89 12.33 -56.28 -0.69 -7.59 16 28 H 0.05 0.38 8.14 -2.38 -0.02 0.36 16 29 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.13 1.16 8.06 -2.39 -0.02 1.14 16 35 H 0.20 3.72 8.06 -2.91 -0.02 3.70 16 36 H 0.41 8.61 7.56 -92.71 -0.70 7.91 16 37 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.88 6.50 -2.38 -0.02 1.87 16 39 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 41 H 0.06 2.05 6.43 -2.38 -0.02 2.03 16 42 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.25 15.16 8.31 -92.70 -0.77 14.39 16 44 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.02 1.12 7.56 -2.39 -0.02 1.11 16 46 H 0.22 2.89 7.50 -2.91 -0.02 2.87 16 Total: -1.00 -83.27 386.46 2.16 -81.11 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.28 Total: 15.55 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: 8.11 Total: 20.48 kcal Atomic # 7 Polarization: -127.91 SS G_CDS: -6.59 Total: -134.50 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -1.66 Total: -32.87 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.03 Total: 50.23 kcal Total: -83.27 2.16 -81.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970812721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.221 kcal (2) G-P(sol) polarization free energy of solvation -83.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds