Wall clock time and date at job start Fri Apr 10 2020 18:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42891 * 114.00030 * 2 1 4 4 C 1.53005 * 109.47417 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47532 * 175.19268 * 4 3 2 6 6 N 1.28442 * 125.19537 * 269.48375 * 5 4 3 7 7 C 1.30862 * 110.93065 * 180.02562 * 6 5 4 8 8 C 1.39668 * 107.85890 * 359.77451 * 7 6 5 9 9 C 1.36601 * 125.18725 * 89.50333 * 5 4 3 10 10 C 1.47165 * 126.88464 * 359.94692 * 9 5 4 11 11 O 1.21619 * 120.00095 * 7.72162 * 10 9 5 12 12 N 1.34780 * 119.99642 * 187.72486 * 10 9 5 13 13 C 1.47415 * 125.65143 * 358.68710 * 12 10 9 14 14 C 1.54916 * 104.83322 * 155.91789 * 13 12 10 15 15 C 1.55155 * 101.57777 * 37.01488 * 14 13 12 16 16 H 1.08993 * 110.72370 * 82.85977 * 15 14 13 17 17 N 1.46507 * 110.71604 * 205.95892 * 15 14 13 18 18 C 1.36932 * 119.99764 * 271.15337 * 17 15 14 19 19 H 1.08003 * 119.99962 * 0.02562 * 18 17 15 20 20 C 1.38814 * 119.99980 * 180.02562 * 18 17 15 21 21 N 1.31617 * 119.99717 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99899 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47002 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.46943 * 120.00352 * 22 20 18 25 25 H 1.48499 * 109.46640 * 239.99795 * 22 20 18 26 26 C 1.47022 * 125.64402 * 178.74374 * 12 10 9 27 27 H 1.09003 * 109.88214 * 61.59680 * 26 12 10 28 28 C 1.52992 * 109.88298 * 300.43033 * 26 12 10 29 29 H 1.09001 * 109.47031 * 299.99498 * 1 2 3 30 30 H 1.08997 * 109.47483 * 59.99709 * 1 2 3 31 31 H 1.09002 * 109.47163 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47201 * 60.00147 * 3 2 1 33 33 H 1.09002 * 109.47607 * 300.00736 * 3 2 1 34 34 H 1.09002 * 109.46508 * 55.19342 * 4 3 2 35 35 H 1.09003 * 109.46700 * 295.19983 * 4 3 2 36 36 H 1.07995 * 126.06757 * 180.02562 * 7 6 5 37 37 H 1.08007 * 127.31709 * 180.27196 * 8 7 6 38 38 H 1.09007 * 110.36742 * 37.08168 * 13 12 10 39 39 H 1.09003 * 110.46308 * 274.80470 * 13 12 10 40 40 H 1.08997 * 111.00373 * 278.93522 * 14 13 12 41 41 H 1.08995 * 111.00278 * 155.08349 * 14 13 12 42 42 H 0.97002 * 119.99711 * 91.16025 * 17 15 14 43 43 H 0.97006 * 120.00091 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.47525 * 302.19097 * 28 26 12 45 45 H 1.09002 * 109.47575 * 62.18984 * 28 26 12 46 46 H 1.09007 * 109.47165 * 182.19602 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1309 2.5181 -0.1164 6 7 4.4331 3.1006 -1.2205 7 6 4.9487 4.2829 -0.9995 8 6 4.9782 4.4858 0.3821 9 6 4.4499 3.3316 0.9336 10 6 4.2635 3.0413 2.3642 11 8 3.9118 1.9324 2.7190 12 7 4.4824 4.0044 3.2813 13 6 4.9357 5.3774 2.9939 14 6 4.4481 6.2169 4.2012 15 6 4.6499 5.2217 5.3743 16 1 5.6833 5.2380 5.7204 17 7 3.7317 5.5250 6.4749 18 6 4.1029 6.4095 7.4522 19 1 5.0723 6.8838 7.4113 20 6 3.2332 6.6964 8.4953 21 7 2.0520 6.1179 8.5453 22 14 3.7392 7.9036 9.8281 23 1 5.1054 8.4111 9.5434 24 1 2.7839 9.0402 9.8551 25 1 3.7307 7.2184 11.1455 26 6 4.3098 3.8593 4.7341 27 1 4.9858 3.0927 5.1130 28 6 2.8613 3.4825 5.0510 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 3.8509 0.5713 -0.8447 35 1 3.8635 0.7196 0.9290 36 1 5.2872 4.9797 -1.7519 37 1 5.3380 5.3577 0.9082 38 1 4.4830 5.7411 2.0714 39 1 6.0228 5.4126 2.9218 40 1 3.3971 6.4844 4.0920 41 1 5.0643 7.1062 4.3329 42 1 2.8610 5.0991 6.5114 43 1 1.4443 6.3181 9.2744 44 1 2.1919 4.2445 4.6517 45 1 2.6283 2.5198 4.5959 46 1 2.7314 3.4149 6.1312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986413439.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:22 Heat of formation + Delta-G solvation = 38.909587 kcal Electronic energy + Delta-G solvation = -27992.411999 eV Core-core repulsion = 24113.590314 eV Total energy + Delta-G solvation = -3878.821685 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.72839 -39.92006 -38.25277 -37.52756 -34.56603 -33.88354 -32.17988 -30.99740 -30.51424 -29.53451 -28.78203 -26.58260 -25.39485 -24.35130 -23.62737 -23.29839 -21.84636 -21.50546 -19.64254 -18.93241 -17.67809 -17.27394 -16.88709 -16.41102 -16.32682 -16.06864 -15.60180 -15.25671 -14.88326 -14.54494 -14.31047 -14.23592 -13.86981 -13.67393 -13.40368 -13.14422 -12.91546 -12.50129 -12.35171 -12.13364 -11.89037 -11.75410 -11.61888 -11.53069 -11.27970 -11.03989 -10.94380 -10.72715 -10.53649 -10.25876 -10.04816 -10.01467 -9.87880 -9.67766 -9.39484 -9.19341 -8.99572 -8.53145 -7.07827 -5.86475 -3.16536 1.14699 2.03002 2.46325 2.98571 3.18242 3.37993 3.43946 3.46169 3.66170 4.31211 4.34735 4.50967 4.61751 4.76394 4.93789 4.94911 5.00546 5.06063 5.09871 5.16982 5.20213 5.36322 5.39054 5.43292 5.46429 5.51726 5.55273 5.56502 5.64223 5.73839 5.94632 6.04801 6.14813 6.24859 6.31450 6.46992 6.50321 6.51129 6.62190 6.74989 6.75495 6.91133 7.55344 7.62560 7.86768 8.13174 8.31807 9.43751 9.97890 10.32757 11.35954 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017663 B = 0.003035 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.876277 B = 9222.360512 C =10367.530339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.385 6.385 3 C 0.055 3.945 4 C 0.119 3.881 5 N -0.258 5.258 6 N -0.280 5.280 7 C -0.002 4.002 8 C -0.201 4.201 9 C -0.024 4.024 10 C 0.599 3.401 11 O -0.541 6.541 12 N -0.589 5.589 13 C 0.081 3.919 14 C -0.155 4.155 15 C 0.174 3.826 16 H 0.066 0.934 17 N -0.717 5.717 18 C -0.245 4.245 19 H 0.073 0.927 20 C -0.010 4.010 21 N -0.930 5.930 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.131 3.869 27 H 0.076 0.924 28 C -0.159 4.159 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.107 0.893 35 H 0.128 0.872 36 H 0.187 0.813 37 H 0.176 0.824 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.391 0.609 43 H 0.256 0.744 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.803 -5.800 -19.335 20.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.303 6.303 3 C -0.023 4.023 4 C -0.002 4.002 5 N -0.047 5.047 6 N -0.112 5.112 7 C -0.179 4.179 8 C -0.229 4.229 9 C -0.152 4.152 10 C 0.386 3.614 11 O -0.420 6.420 12 N -0.322 5.322 13 C -0.041 4.041 14 C -0.196 4.196 15 C 0.062 3.938 16 H 0.084 0.916 17 N -0.360 5.360 18 C -0.376 4.376 19 H 0.091 0.909 20 C -0.206 4.206 21 N -0.578 5.578 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.028 3.972 27 H 0.094 0.906 28 C -0.217 4.217 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.125 0.875 35 H 0.146 0.854 36 H 0.204 0.796 37 H 0.193 0.807 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.229 0.771 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.403 -7.406 -19.865 21.336 hybrid contribution -0.067 1.515 1.265 1.975 sum 2.335 -5.891 -18.600 19.650 Atomic orbital electron populations 1.22788 0.80025 1.03109 1.00363 1.87781 1.20474 1.26511 1.95548 1.22640 0.92539 0.85731 1.01407 1.21862 0.92496 0.78662 1.07170 1.45473 1.42941 1.14335 1.01916 1.73202 1.17315 1.10056 1.10609 1.23632 1.03756 0.94365 0.96141 1.22931 1.06397 0.98829 0.94758 1.21472 1.09381 0.93788 0.90594 1.16477 0.78214 0.83947 0.82783 1.90773 1.48483 1.21716 1.81031 1.48216 1.64837 1.11883 1.07267 1.22928 0.99305 0.81600 1.00301 1.23596 1.02216 0.99014 0.94786 1.21187 0.95206 0.89244 0.88180 0.91583 1.42667 1.17141 1.51971 1.24195 1.19283 1.00221 1.17114 1.00971 0.90940 1.24761 0.96383 1.00476 0.99026 1.69667 1.08162 1.46355 1.33625 0.86106 0.77587 0.80510 0.81873 1.20480 1.21837 1.21818 1.21929 0.98176 0.99647 0.77497 0.90630 1.22016 0.95069 1.01411 1.03253 0.93572 0.93945 0.89126 0.92150 0.92665 0.87523 0.85396 0.79588 0.80737 0.89779 0.90990 0.90584 0.90308 0.77120 0.93393 0.92508 0.92149 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.50 10.70 -35.23 -0.38 -4.88 16 3 C 0.05 0.64 6.26 37.16 0.23 0.87 16 4 C 0.12 1.41 6.24 -4.04 -0.03 1.38 16 5 N -0.26 -3.36 3.35 -57.14 -0.19 -3.55 16 6 N -0.28 -3.51 11.90 30.59 0.36 -3.14 16 7 C 0.00 -0.03 12.03 -17.43 -0.21 -0.23 16 8 C -0.20 -2.21 9.30 -38.99 -0.36 -2.57 16 9 C -0.02 -0.33 6.91 -82.06 -0.57 -0.90 16 10 C 0.60 9.26 7.60 -12.63 -0.10 9.16 16 11 O -0.54 -9.54 13.64 5.26 0.07 -9.47 16 12 N -0.59 -8.75 3.08 -164.37 -0.51 -9.26 16 13 C 0.08 0.99 5.31 -2.53 -0.01 0.98 16 14 C -0.15 -2.36 6.77 -24.58 -0.17 -2.52 16 15 C 0.17 3.16 3.47 -66.09 -0.23 2.93 16 16 H 0.07 1.19 8.11 -51.93 -0.42 0.77 16 17 N -0.72 -16.68 4.99 -51.65 -0.26 -16.93 16 18 C -0.24 -6.38 9.97 -15.06 -0.15 -6.53 16 19 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 20 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 21 N -0.93 -27.00 13.06 55.49 0.72 -26.27 16 22 Si 0.91 21.51 29.55 -169.99 -5.02 16.48 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.13 2.21 3.47 -66.95 -0.23 1.98 16 27 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 28 C -0.16 -2.87 7.95 37.15 0.30 -2.58 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.13 1.68 6.21 -51.93 -0.32 1.36 16 36 H 0.19 1.27 8.06 -52.49 -0.42 0.84 16 37 H 0.18 1.52 4.89 -52.48 -0.26 1.27 16 38 H 0.08 0.88 5.25 -51.92 -0.27 0.61 16 39 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 40 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.39 9.66 5.01 -40.82 -0.20 9.46 16 43 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.06 1.05 8.06 -51.93 -0.42 0.63 16 45 H 0.06 1.08 6.80 -51.93 -0.35 0.73 16 46 H 0.08 1.64 6.72 -51.92 -0.35 1.29 16 LS Contribution 369.95 15.07 5.58 5.58 Total: -1.00 -31.36 369.95 -6.92 -38.28 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.79 Total: 10.15 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -0.51 Total: 3.01 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.13 Total: -59.15 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.31 Total: -14.34 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.36 -6.92 -38.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986413439.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.187 kcal (2) G-P(sol) polarization free energy of solvation -31.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds