Wall clock time and date at job start Fri Apr 10 2020 18:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42891 * 114.00030 * 2 1 4 4 C 1.53005 * 109.47417 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47532 * 175.19268 * 4 3 2 6 6 N 1.28442 * 125.19537 * 269.48375 * 5 4 3 7 7 C 1.30862 * 110.93065 * 180.02562 * 6 5 4 8 8 C 1.39668 * 107.85890 * 359.77451 * 7 6 5 9 9 C 1.36601 * 125.18725 * 89.50333 * 5 4 3 10 10 C 1.47165 * 126.88464 * 359.94692 * 9 5 4 11 11 O 1.21619 * 120.00095 * 7.72162 * 10 9 5 12 12 N 1.34780 * 119.99642 * 187.72486 * 10 9 5 13 13 C 1.47415 * 125.65143 * 358.68710 * 12 10 9 14 14 C 1.54916 * 104.83322 * 155.91789 * 13 12 10 15 15 C 1.55155 * 101.57777 * 37.01488 * 14 13 12 16 16 H 1.08993 * 110.72370 * 82.85977 * 15 14 13 17 17 N 1.46507 * 110.71604 * 205.95892 * 15 14 13 18 18 C 1.36932 * 119.99764 * 271.15337 * 17 15 14 19 19 H 1.08003 * 119.99962 * 0.02562 * 18 17 15 20 20 C 1.38814 * 119.99980 * 180.02562 * 18 17 15 21 21 N 1.31617 * 119.99717 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99899 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47002 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.46943 * 120.00352 * 22 20 18 25 25 H 1.48499 * 109.46640 * 239.99795 * 22 20 18 26 26 C 1.47022 * 125.64402 * 178.74374 * 12 10 9 27 27 H 1.09003 * 109.88214 * 61.59680 * 26 12 10 28 28 C 1.52992 * 109.88298 * 300.43033 * 26 12 10 29 29 H 1.09001 * 109.47031 * 299.99498 * 1 2 3 30 30 H 1.08997 * 109.47483 * 59.99709 * 1 2 3 31 31 H 1.09002 * 109.47163 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47201 * 60.00147 * 3 2 1 33 33 H 1.09002 * 109.47607 * 300.00736 * 3 2 1 34 34 H 1.09002 * 109.46508 * 55.19342 * 4 3 2 35 35 H 1.09003 * 109.46700 * 295.19983 * 4 3 2 36 36 H 1.07995 * 126.06757 * 180.02562 * 7 6 5 37 37 H 1.08007 * 127.31709 * 180.27196 * 8 7 6 38 38 H 1.09007 * 110.36742 * 37.08168 * 13 12 10 39 39 H 1.09003 * 110.46308 * 274.80470 * 13 12 10 40 40 H 1.08997 * 111.00373 * 278.93522 * 14 13 12 41 41 H 1.08995 * 111.00278 * 155.08349 * 14 13 12 42 42 H 0.97002 * 119.99711 * 91.16025 * 17 15 14 43 43 H 0.97006 * 120.00091 * 179.97438 * 21 20 18 44 44 H 1.09002 * 109.47525 * 302.19097 * 28 26 12 45 45 H 1.09002 * 109.47575 * 62.18984 * 28 26 12 46 46 H 1.09007 * 109.47165 * 182.19602 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1309 2.5181 -0.1164 6 7 4.4331 3.1006 -1.2205 7 6 4.9487 4.2829 -0.9995 8 6 4.9782 4.4858 0.3821 9 6 4.4499 3.3316 0.9336 10 6 4.2635 3.0413 2.3642 11 8 3.9118 1.9324 2.7190 12 7 4.4824 4.0044 3.2813 13 6 4.9357 5.3774 2.9939 14 6 4.4481 6.2169 4.2012 15 6 4.6499 5.2217 5.3743 16 1 5.6833 5.2380 5.7204 17 7 3.7317 5.5250 6.4749 18 6 4.1029 6.4095 7.4522 19 1 5.0723 6.8838 7.4113 20 6 3.2332 6.6964 8.4953 21 7 2.0520 6.1179 8.5453 22 14 3.7392 7.9036 9.8281 23 1 5.1054 8.4111 9.5434 24 1 2.7839 9.0402 9.8551 25 1 3.7307 7.2184 11.1455 26 6 4.3098 3.8593 4.7341 27 1 4.9858 3.0927 5.1130 28 6 2.8613 3.4825 5.0510 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 3.8509 0.5713 -0.8447 35 1 3.8635 0.7196 0.9290 36 1 5.2872 4.9797 -1.7519 37 1 5.3380 5.3577 0.9082 38 1 4.4830 5.7411 2.0714 39 1 6.0228 5.4126 2.9218 40 1 3.3971 6.4844 4.0920 41 1 5.0643 7.1062 4.3329 42 1 2.8610 5.0991 6.5114 43 1 1.4443 6.3181 9.2744 44 1 2.1919 4.2445 4.6517 45 1 2.6283 2.5198 4.5959 46 1 2.7314 3.4149 6.1312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986413439.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:21 Heat of formation + Delta-G solvation = 17.720961 kcal Electronic energy + Delta-G solvation = -27993.330807 eV Core-core repulsion = 24113.590314 eV Total energy + Delta-G solvation = -3879.740493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.63942 -41.17023 -39.13515 -38.83036 -36.08658 -34.93287 -33.70999 -32.38991 -31.76530 -30.44131 -30.25554 -27.35207 -26.87267 -25.70787 -25.04930 -24.39169 -22.85515 -22.62216 -20.75549 -20.23736 -19.43451 -18.46996 -17.90764 -17.41967 -17.24970 -17.12703 -16.79702 -16.42613 -16.28530 -15.81184 -15.66205 -15.28434 -15.09222 -14.91094 -14.58879 -14.45147 -14.02733 -13.87727 -13.56691 -13.21568 -13.16562 -12.96969 -12.92577 -12.87542 -12.66111 -12.49171 -12.38895 -12.06971 -11.99513 -11.79822 -11.57897 -11.46590 -11.08550 -10.90197 -10.86704 -10.34712 -10.08266 -9.73637 -8.99394 -7.92205 -5.20929 0.14858 1.09099 1.51077 1.51910 1.61352 1.62686 1.86492 2.09266 2.59118 2.81514 3.25574 3.42400 3.45434 3.72071 3.73540 3.81458 3.91036 3.94550 4.05703 4.11817 4.19257 4.33394 4.38175 4.39247 4.41036 4.45405 4.52258 4.56647 4.63812 4.65348 4.73530 4.75012 4.83558 4.91179 5.03368 5.21344 5.24801 5.29583 5.48652 5.50689 5.57984 5.65983 5.93184 6.29475 6.38427 6.88645 7.04838 7.37150 8.10463 8.33564 9.31666 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017663 B = 0.003035 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.876277 B = 9222.360512 C =10367.530339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.402 6.402 3 C 0.065 3.935 4 C 0.120 3.880 5 N -0.267 5.267 6 N -0.295 5.295 7 C 0.004 3.996 8 C -0.184 4.184 9 C -0.051 4.051 10 C 0.596 3.404 11 O -0.573 6.573 12 N -0.590 5.590 13 C 0.087 3.913 14 C -0.145 4.145 15 C 0.166 3.834 16 H 0.073 0.927 17 N -0.732 5.732 18 C -0.235 4.235 19 H 0.084 0.916 20 C -0.076 4.076 21 N -0.971 5.971 22 Si 0.971 3.029 23 H -0.262 1.262 24 H -0.297 1.297 25 H -0.299 1.299 26 C 0.138 3.862 27 H 0.071 0.929 28 C -0.145 4.145 29 H 0.041 0.959 30 H 0.056 0.944 31 H 0.108 0.892 32 H 0.040 0.960 33 H 0.063 0.937 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.225 0.775 37 H 0.202 0.798 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.056 0.944 41 H 0.094 0.906 42 H 0.380 0.620 43 H 0.249 0.751 44 H 0.047 0.953 45 H 0.056 0.944 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.681 -4.285 -21.648 22.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.013 4.013 4 C 0.000 4.000 5 N -0.056 5.056 6 N -0.127 5.127 7 C -0.172 4.172 8 C -0.212 4.212 9 C -0.178 4.178 10 C 0.385 3.615 11 O -0.454 6.454 12 N -0.322 5.322 13 C -0.034 4.034 14 C -0.186 4.186 15 C 0.056 3.944 16 H 0.091 0.909 17 N -0.374 5.374 18 C -0.366 4.366 19 H 0.102 0.898 20 C -0.268 4.268 21 N -0.622 5.622 22 Si 0.801 3.199 23 H -0.186 1.186 24 H -0.224 1.224 25 H -0.227 1.227 26 C 0.034 3.966 27 H 0.089 0.911 28 C -0.203 4.203 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.127 0.873 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.139 0.861 35 H 0.128 0.872 36 H 0.242 0.758 37 H 0.218 0.782 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.075 0.925 41 H 0.113 0.887 42 H 0.216 0.784 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.335 -5.875 -22.229 23.397 hybrid contribution -0.618 1.002 1.875 2.214 sum 3.717 -4.873 -20.353 21.256 Atomic orbital electron populations 1.23000 0.78565 1.04527 1.00853 1.87759 1.22150 1.26541 1.95600 1.22500 0.92484 0.85684 1.00670 1.21801 0.92569 0.78856 1.06798 1.45529 1.43537 1.14551 1.01971 1.73217 1.17830 1.11130 1.10493 1.24320 1.02155 0.93929 0.96773 1.23282 1.04544 0.98305 0.95102 1.21359 1.11610 0.95329 0.89542 1.16790 0.77499 0.83481 0.83754 1.90759 1.49811 1.23082 1.81699 1.48173 1.64940 1.13009 1.06056 1.23124 1.01274 0.79237 0.99746 1.23400 1.01589 0.99136 0.94427 1.21403 0.94356 0.90705 0.87939 0.90923 1.42850 1.17555 1.51703 1.25329 1.19698 1.00069 1.16097 1.00772 0.89839 1.25532 0.96731 1.02919 1.01621 1.69826 1.09447 1.48574 1.34363 0.85103 0.77815 0.78151 0.78860 1.18568 1.22448 1.22699 1.21654 0.96884 0.98855 0.79209 0.91108 1.21829 0.96125 1.00884 1.01496 0.94015 0.92497 0.87331 0.94201 0.91872 0.86140 0.87204 0.75832 0.78174 0.87248 0.87796 0.92538 0.88708 0.78410 0.94186 0.93364 0.92520 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.40 -9.41 10.70 -148.98 -1.59 -11.00 16 3 C 0.06 1.51 6.26 71.98 0.45 1.96 16 4 C 0.12 2.86 6.24 86.38 0.54 3.39 16 5 N -0.27 -6.60 3.35 -334.68 -1.12 -7.72 16 6 N -0.30 -6.65 11.90 -57.15 -0.68 -7.33 16 7 C 0.00 0.08 12.03 85.18 1.02 1.10 16 8 C -0.18 -3.32 9.30 22.66 0.21 -3.11 16 9 C -0.05 -1.29 6.91 40.79 0.28 -1.01 16 10 C 0.60 18.01 7.60 86.59 0.66 18.67 16 11 O -0.57 -20.64 13.64 -4.09 -0.06 -20.69 16 12 N -0.59 -16.65 3.08 -792.19 -2.44 -19.09 16 13 C 0.09 1.83 5.31 86.86 0.46 2.29 16 14 C -0.14 -4.07 6.77 31.99 0.22 -3.85 16 15 C 0.17 5.87 3.47 46.18 0.16 6.03 16 16 H 0.07 2.49 8.11 -2.39 -0.02 2.48 16 17 N -0.73 -34.33 4.99 -317.32 -1.58 -35.91 16 18 C -0.23 -12.15 9.97 84.03 0.84 -11.31 16 19 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 20 C -0.08 -4.18 5.50 84.86 0.47 -3.71 16 21 N -0.97 -57.94 13.06 21.65 0.28 -57.66 16 22 Si 0.97 44.47 29.55 68.60 2.03 46.50 16 23 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 24 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 26 C 0.14 4.65 3.47 45.34 0.16 4.81 16 27 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 28 C -0.15 -5.45 7.95 71.98 0.57 -4.88 16 29 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.11 3.01 6.21 -2.39 -0.01 2.99 16 36 H 0.23 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.20 2.39 4.89 -2.91 -0.01 2.38 16 38 H 0.11 1.79 5.25 -2.38 -0.01 1.78 16 39 H 0.10 1.62 8.07 -2.39 -0.02 1.60 16 40 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.38 19.41 5.01 -92.71 -0.46 18.95 16 43 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 44 H 0.05 1.85 8.06 -2.39 -0.02 1.83 16 45 H 0.06 2.14 6.80 -2.39 -0.02 2.12 16 46 H 0.06 2.52 6.72 -2.38 -0.02 2.50 16 Total: -1.00 -69.64 369.95 2.65 -66.98 By element: Atomic # 1 Polarization: 33.31 SS G_CDS: 0.53 Total: 33.84 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 7.28 Total: 12.08 kcal Atomic # 7 Polarization: -122.17 SS G_CDS: -5.54 Total: -127.71 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -1.65 Total: -31.70 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -69.64 2.65 -66.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986413439.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.705 kcal (2) G-P(sol) polarization free energy of solvation -69.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds