Wall clock time and date at job start Fri Apr 10 2020 18:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.99843 * 2 1 4 4 C 1.54335 * 109.99512 * 238.96194 * 2 1 3 5 5 C 1.55156 * 103.02282 * 218.66572 * 4 2 1 6 6 H 1.09002 * 111.00111 * 153.38052 * 5 4 2 7 7 N 1.46498 * 110.99936 * 277.22806 * 5 4 2 8 8 C 1.36945 * 119.99926 * 198.64875 * 7 5 4 9 9 H 1.08001 * 119.99379 * 0.02562 * 8 7 5 10 10 C 1.38807 * 119.99842 * 180.02562 * 8 7 5 11 11 N 1.31621 * 120.00415 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99677 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47465 * 59.99534 * 12 10 8 14 14 H 1.48499 * 109.47343 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47096 * 299.99586 * 12 10 8 16 16 C 1.54906 * 101.58338 * 35.30158 * 5 4 2 17 17 N 1.47023 * 109.88656 * 121.09284 * 2 1 3 18 18 C 1.34773 * 125.64388 * 298.39762 * 17 2 1 19 19 O 1.21489 * 120.00584 * 359.71343 * 18 17 2 20 20 C 1.48337 * 119.99728 * 179.71235 * 18 17 2 21 21 C 1.42272 * 126.93836 * 179.97438 * 20 18 17 22 22 C 1.35313 * 103.92168 * 180.02562 * 21 20 18 23 23 C 1.50703 * 126.66661 * 180.02562 * 22 21 20 24 24 N 1.46899 * 109.47107 * 90.00256 * 23 22 21 25 25 C 1.46901 * 111.00103 * 169.99758 * 24 23 22 26 26 C 1.46902 * 111.00255 * 293.95458 * 24 23 22 27 27 O 1.34015 * 106.66912 * 0.27121 * 22 21 20 28 28 N 1.20907 * 111.84353 * 359.51784 * 27 22 21 29 29 H 1.08998 * 109.46864 * 300.36013 * 1 2 3 30 30 H 1.08996 * 109.47601 * 60.36261 * 1 2 3 31 31 H 1.08997 * 109.47098 * 180.36099 * 1 2 3 32 32 H 1.09003 * 110.85404 * 100.18932 * 4 2 1 33 33 H 1.09004 * 110.66262 * 337.04311 * 4 2 1 34 34 H 0.96999 * 120.00528 * 18.65261 * 7 5 4 35 35 H 0.97000 * 119.99946 * 179.97438 * 11 10 8 36 36 H 1.08996 * 110.37162 * 204.15599 * 16 5 4 37 37 H 1.08995 * 110.45896 * 81.87740 * 16 5 4 38 38 H 1.08000 * 128.04129 * 0.06898 * 21 20 18 39 39 H 1.09002 * 109.47152 * 330.00343 * 23 22 21 40 40 H 1.09001 * 109.46980 * 210.00444 * 23 22 21 41 41 H 1.09007 * 109.46694 * 60.00180 * 25 24 23 42 42 H 1.08996 * 109.47015 * 179.97438 * 25 24 23 43 43 H 1.08997 * 109.47268 * 300.00786 * 25 24 23 44 44 H 1.09005 * 109.46528 * 59.99744 * 26 24 23 45 45 H 1.09000 * 109.46785 * 179.97438 * 26 24 23 46 46 H 1.08997 * 109.47044 * 300.00388 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0244 0.0000 4 6 2.0577 -0.7478 -1.2427 5 6 3.2864 -1.5183 -0.6914 6 1 3.4807 -2.4155 -1.2791 7 7 4.4699 -0.6561 -0.6464 8 6 5.7189 -1.2114 -0.5633 9 1 5.8314 -2.2850 -0.5313 10 6 6.8402 -0.3944 -0.5201 11 7 6.7031 0.9141 -0.5596 12 14 8.5440 -1.1519 -0.4074 13 1 8.7785 -2.0210 -1.5886 14 1 9.5642 -0.0734 -0.3754 15 1 8.6437 -1.9638 0.8320 16 6 2.8100 -1.8824 0.7369 17 7 2.0301 -0.7140 1.1839 18 6 1.8074 -0.3619 2.4656 19 8 1.1464 0.6256 2.7184 20 6 2.3695 -1.1801 3.5679 21 6 2.2282 -0.9463 4.9641 22 6 2.9170 -1.9611 5.5355 23 6 3.0985 -2.2070 7.0113 24 7 2.0083 -3.0598 7.5033 25 6 2.2743 -3.5157 8.8742 26 6 0.7173 -2.3638 7.4211 27 8 3.4111 -2.7021 4.5341 28 7 3.0967 -2.2633 3.4523 29 1 -0.3633 0.5194 0.8867 30 1 -0.3634 0.5082 -0.8932 31 1 -0.3633 -1.0276 0.0065 32 1 2.3597 -0.0450 -2.0192 33 1 1.3067 -1.4406 -1.6224 34 1 4.3689 0.3082 -0.6754 35 1 7.4867 1.4850 -0.5290 36 1 3.6656 -2.0410 1.3933 37 1 2.1808 -2.7721 0.7134 38 1 1.6945 -0.1453 5.4542 39 1 3.0835 -1.2554 7.5427 40 1 4.0537 -2.7035 7.1821 41 1 2.3668 -2.6520 9.5328 42 1 1.4516 -4.1448 9.2139 43 1 3.2017 -4.0881 8.8933 44 1 0.5128 -2.0989 6.3837 45 1 -0.0722 -3.0179 7.7912 46 1 0.7534 -1.4585 8.0270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989074170.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:51 Heat of formation + Delta-G solvation = 61.237611 kcal Electronic energy + Delta-G solvation = -28021.694479 eV Core-core repulsion = 24143.841010 eV Total energy + Delta-G solvation = -3877.853469 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -44.95753 -39.79730 -37.92195 -37.36884 -33.98699 -33.91749 -32.59633 -31.35408 -31.14398 -28.43214 -27.97564 -27.60504 -25.53390 -24.87153 -23.68485 -22.89611 -22.44113 -21.15146 -19.97870 -18.62172 -17.73706 -17.31492 -17.14776 -16.70072 -15.92685 -15.65967 -15.61907 -15.07345 -14.85136 -14.57951 -13.94229 -13.81845 -13.61622 -13.43914 -13.23076 -12.99734 -12.78284 -12.75117 -12.23814 -12.21549 -12.12646 -11.98085 -11.95737 -11.63078 -11.34932 -11.16492 -10.88611 -10.71544 -10.54782 -10.35921 -10.25747 -10.01285 -9.87721 -9.70257 -9.56424 -9.01080 -8.79546 -8.27275 -7.01598 -5.79850 -3.10076 1.28298 1.69833 2.90487 3.14092 3.42909 3.45171 3.47499 3.48293 3.65841 4.12414 4.41443 4.55985 4.72290 4.78926 4.89720 5.01162 5.05586 5.08088 5.16199 5.21940 5.26309 5.29847 5.38682 5.46793 5.50297 5.54002 5.60942 5.63725 5.66087 5.83129 5.85383 5.89245 6.03048 6.24068 6.29582 6.39753 6.48151 6.48442 6.55366 6.61866 6.69820 6.86501 7.67261 7.81361 8.11954 8.37432 8.40356 9.49175 10.03855 10.38668 11.42186 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011045 B = 0.003990 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.432408 B = 7015.334839 C = 8899.604100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.139 3.861 3 H 0.077 0.923 4 C -0.137 4.137 5 C 0.168 3.832 6 H 0.072 0.928 7 N -0.712 5.712 8 C -0.245 4.245 9 H 0.072 0.928 10 C -0.009 4.009 11 N -0.930 5.930 12 Si 0.907 3.093 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.285 1.285 16 C 0.067 3.933 17 N -0.581 5.581 18 C 0.610 3.390 19 O -0.540 6.540 20 C -0.017 4.017 21 C -0.176 4.176 22 C -0.032 4.032 23 C 0.134 3.866 24 N -0.545 5.545 25 C 0.026 3.974 26 C 0.016 3.984 27 O 0.131 5.869 28 N -0.312 5.312 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.096 0.904 37 H 0.055 0.945 38 H 0.176 0.824 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.029 0.971 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.602 -7.133 14.392 20.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.036 3.964 3 H 0.096 0.904 4 C -0.176 4.176 5 C 0.056 3.944 6 H 0.090 0.910 7 N -0.352 5.352 8 C -0.376 4.376 9 H 0.090 0.910 10 C -0.205 4.205 11 N -0.578 5.578 12 Si 0.738 3.262 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.212 1.212 16 C -0.059 4.059 17 N -0.312 5.312 18 C 0.396 3.604 19 O -0.417 6.417 20 C -0.176 4.176 21 C -0.200 4.200 22 C -0.095 4.095 23 C 0.006 3.994 24 N -0.269 5.269 25 C -0.122 4.122 26 C -0.132 4.132 27 O 0.054 5.946 28 N -0.011 5.011 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.219 0.781 35 H 0.066 0.934 36 H 0.114 0.886 37 H 0.073 0.927 38 H 0.193 0.807 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.048 0.952 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -12.378 -7.739 13.170 19.661 hybrid contribution 0.676 1.227 1.156 1.816 sum -11.702 -6.512 14.326 19.610 Atomic orbital electron populations 1.22137 0.95158 1.01881 1.02614 1.21554 0.93681 0.96819 0.84343 0.90448 1.23050 0.98255 1.00043 0.96236 1.21352 0.86944 0.94460 0.91651 0.90998 1.42324 1.00247 1.05181 1.87415 1.19185 0.83357 0.91804 1.43250 0.90996 1.24753 0.97940 0.95322 1.02529 1.69659 1.29043 1.02098 1.56963 0.86272 0.84166 0.77814 0.77966 1.21117 1.21708 1.21186 1.23614 0.95162 0.86077 1.01024 1.48241 1.50546 1.28474 1.03949 1.16432 0.80162 0.83338 0.80436 1.90731 1.41136 1.26617 1.83229 1.23403 1.02594 0.96255 0.95378 1.22349 1.04257 1.01710 0.91639 1.24075 0.99420 0.93061 0.92982 1.20479 0.96487 0.97697 0.84725 1.61899 1.02253 1.39778 1.23001 1.22403 1.02901 0.99727 0.87190 1.22534 0.90799 0.97155 1.02734 1.84836 1.55543 1.44345 1.09910 1.74390 1.12454 1.11499 1.02767 0.91549 0.91715 0.92780 0.89585 0.90600 0.78073 0.93393 0.88630 0.92677 0.80705 0.90925 0.87869 0.95241 0.90870 0.90808 0.90815 0.90970 0.95081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.11 37.16 0.34 -1.95 16 2 C 0.14 2.36 3.45 -66.95 -0.23 2.13 16 3 H 0.08 1.45 8.14 -51.92 -0.42 1.03 16 4 C -0.14 -2.18 6.05 -24.89 -0.15 -2.33 16 5 C 0.17 3.26 3.69 -65.79 -0.24 3.02 16 6 H 0.07 1.35 8.13 -51.93 -0.42 0.92 16 7 N -0.71 -17.59 5.27 -51.35 -0.27 -17.86 16 8 C -0.25 -6.72 9.98 -15.06 -0.15 -6.87 16 9 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 10 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 11 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 12 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 C 0.07 1.26 5.87 -2.53 -0.01 1.25 16 17 N -0.58 -10.94 3.06 -163.94 -0.50 -11.45 16 18 C 0.61 11.97 7.67 -12.11 -0.09 11.87 16 19 O -0.54 -11.30 16.00 5.38 0.09 -11.21 16 20 C -0.02 -0.31 7.02 -82.53 -0.58 -0.89 16 21 C -0.18 -2.47 9.58 -39.08 -0.37 -2.85 16 22 C -0.03 -0.39 6.34 -35.35 -0.22 -0.62 16 23 C 0.13 1.16 5.53 -4.98 -0.03 1.13 16 24 N -0.54 -4.66 5.01 -252.72 -1.27 -5.92 16 25 C 0.03 0.15 9.57 60.07 0.57 0.73 16 26 C 0.02 0.13 9.29 60.07 0.56 0.68 16 27 O 0.13 1.99 11.18 17.25 0.19 2.19 16 28 N -0.31 -5.52 9.30 33.29 0.31 -5.21 16 29 H 0.07 1.05 6.89 -51.93 -0.36 0.69 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.08 1.00 7.85 -51.93 -0.41 0.60 16 34 H 0.39 10.31 7.81 -40.82 -0.32 9.99 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.10 2.06 6.24 -51.93 -0.32 1.73 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.18 2.11 8.06 -52.49 -0.42 1.68 16 39 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 40 H 0.10 0.76 8.06 -51.93 -0.42 0.34 16 41 H 0.03 0.15 8.14 -51.92 -0.42 -0.27 16 42 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 43 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 44 H 0.07 0.70 6.34 -51.93 -0.33 0.37 16 45 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 46 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 377.39 15.07 5.69 5.69 Total: -1.00 -32.99 377.39 -7.97 -40.96 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -7.19 Total: 7.91 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -0.71 Total: 4.96 kcal Atomic # 7 Polarization: -66.89 SS G_CDS: -1.00 Total: -67.89 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.28 Total: -9.02 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.99 -7.97 -40.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989074170.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.196 kcal (2) G-P(sol) polarization free energy of solvation -32.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds