Wall clock time and date at job start Fri Apr 10 2020 18:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.99843 * 2 1 4 4 C 1.54335 * 109.99512 * 238.96194 * 2 1 3 5 5 C 1.55156 * 103.02282 * 218.66572 * 4 2 1 6 6 H 1.09002 * 111.00111 * 153.38052 * 5 4 2 7 7 N 1.46498 * 110.99936 * 277.22806 * 5 4 2 8 8 C 1.36945 * 119.99926 * 198.64875 * 7 5 4 9 9 H 1.08001 * 119.99379 * 0.02562 * 8 7 5 10 10 C 1.38807 * 119.99842 * 180.02562 * 8 7 5 11 11 N 1.31621 * 120.00415 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99677 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47465 * 59.99534 * 12 10 8 14 14 H 1.48499 * 109.47343 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47096 * 299.99586 * 12 10 8 16 16 C 1.54906 * 101.58338 * 35.30158 * 5 4 2 17 17 N 1.47023 * 109.88656 * 121.09284 * 2 1 3 18 18 C 1.34773 * 125.64388 * 298.39762 * 17 2 1 19 19 O 1.21489 * 120.00584 * 359.71343 * 18 17 2 20 20 C 1.48337 * 119.99728 * 179.71235 * 18 17 2 21 21 C 1.42272 * 126.93836 * 179.97438 * 20 18 17 22 22 C 1.35313 * 103.92168 * 180.02562 * 21 20 18 23 23 C 1.50703 * 126.66661 * 180.02562 * 22 21 20 24 24 N 1.46899 * 109.47107 * 90.00256 * 23 22 21 25 25 C 1.46901 * 111.00103 * 169.99758 * 24 23 22 26 26 C 1.46902 * 111.00255 * 293.95458 * 24 23 22 27 27 O 1.34015 * 106.66912 * 0.27121 * 22 21 20 28 28 N 1.20907 * 111.84353 * 359.51784 * 27 22 21 29 29 H 1.08998 * 109.46864 * 300.36013 * 1 2 3 30 30 H 1.08996 * 109.47601 * 60.36261 * 1 2 3 31 31 H 1.08997 * 109.47098 * 180.36099 * 1 2 3 32 32 H 1.09003 * 110.85404 * 100.18932 * 4 2 1 33 33 H 1.09004 * 110.66262 * 337.04311 * 4 2 1 34 34 H 0.96999 * 120.00528 * 18.65261 * 7 5 4 35 35 H 0.97000 * 119.99946 * 179.97438 * 11 10 8 36 36 H 1.08996 * 110.37162 * 204.15599 * 16 5 4 37 37 H 1.08995 * 110.45896 * 81.87740 * 16 5 4 38 38 H 1.08000 * 128.04129 * 0.06898 * 21 20 18 39 39 H 1.09002 * 109.47152 * 330.00343 * 23 22 21 40 40 H 1.09001 * 109.46980 * 210.00444 * 23 22 21 41 41 H 1.09007 * 109.46694 * 60.00180 * 25 24 23 42 42 H 1.08996 * 109.47015 * 179.97438 * 25 24 23 43 43 H 1.08997 * 109.47268 * 300.00786 * 25 24 23 44 44 H 1.09005 * 109.46528 * 59.99744 * 26 24 23 45 45 H 1.09000 * 109.46785 * 179.97438 * 26 24 23 46 46 H 1.08997 * 109.47044 * 300.00388 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0244 0.0000 4 6 2.0577 -0.7478 -1.2427 5 6 3.2864 -1.5183 -0.6914 6 1 3.4807 -2.4155 -1.2791 7 7 4.4699 -0.6561 -0.6464 8 6 5.7189 -1.2114 -0.5633 9 1 5.8314 -2.2850 -0.5313 10 6 6.8402 -0.3944 -0.5201 11 7 6.7031 0.9141 -0.5596 12 14 8.5440 -1.1519 -0.4074 13 1 8.7785 -2.0210 -1.5886 14 1 9.5642 -0.0734 -0.3754 15 1 8.6437 -1.9638 0.8320 16 6 2.8100 -1.8824 0.7369 17 7 2.0301 -0.7140 1.1839 18 6 1.8074 -0.3619 2.4656 19 8 1.1464 0.6256 2.7184 20 6 2.3695 -1.1801 3.5679 21 6 2.2282 -0.9463 4.9641 22 6 2.9170 -1.9611 5.5355 23 6 3.0985 -2.2070 7.0113 24 7 2.0083 -3.0598 7.5033 25 6 2.2743 -3.5157 8.8742 26 6 0.7173 -2.3638 7.4211 27 8 3.4111 -2.7021 4.5341 28 7 3.0967 -2.2633 3.4523 29 1 -0.3633 0.5194 0.8867 30 1 -0.3634 0.5082 -0.8932 31 1 -0.3633 -1.0276 0.0065 32 1 2.3597 -0.0450 -2.0192 33 1 1.3067 -1.4406 -1.6224 34 1 4.3689 0.3082 -0.6754 35 1 7.4867 1.4850 -0.5290 36 1 3.6656 -2.0410 1.3933 37 1 2.1808 -2.7721 0.7134 38 1 1.6945 -0.1453 5.4542 39 1 3.0835 -1.2554 7.5427 40 1 4.0537 -2.7035 7.1821 41 1 2.3668 -2.6520 9.5328 42 1 1.4516 -4.1448 9.2139 43 1 3.2017 -4.0881 8.8933 44 1 0.5128 -2.0989 6.3837 45 1 -0.0722 -3.0179 7.7912 46 1 0.7534 -1.4585 8.0270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989074170.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:50 Heat of formation + Delta-G solvation = 37.936379 kcal Electronic energy + Delta-G solvation = -28022.704897 eV Core-core repulsion = 24143.841010 eV Total energy + Delta-G solvation = -3878.863887 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.18885 -41.27477 -38.91251 -38.55955 -35.86981 -35.17232 -33.69517 -33.18866 -32.46779 -30.19541 -28.60866 -28.32345 -26.91503 -26.22750 -25.66686 -23.97035 -23.37431 -22.41213 -21.46815 -19.94901 -19.27627 -18.95689 -18.41331 -18.03582 -17.44726 -16.49455 -16.46297 -16.24940 -16.22180 -15.84744 -15.54556 -15.40367 -14.93442 -14.81475 -14.57187 -14.28830 -14.02858 -13.59857 -13.40888 -13.27340 -13.22168 -12.90876 -12.83947 -12.78639 -12.73282 -12.57041 -12.44615 -12.30591 -12.24976 -12.00286 -11.70748 -11.57509 -11.53345 -11.36508 -11.01027 -10.65027 -9.81076 -9.38875 -9.03144 -7.96296 -5.25678 0.04284 0.55438 1.45552 1.48455 1.54146 1.67336 1.98291 2.02049 2.54159 2.81533 3.02237 3.32750 3.35504 3.65449 3.81212 3.85483 3.87669 4.00281 4.05038 4.05217 4.23779 4.30814 4.42484 4.42920 4.49722 4.57059 4.63536 4.69828 4.73367 4.75897 4.76433 4.83907 4.93632 5.02929 5.04498 5.10758 5.13767 5.15272 5.28531 5.41718 5.51235 5.88923 6.00551 6.24486 6.32406 6.78691 7.06182 7.31096 8.04448 8.27410 9.26756 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011045 B = 0.003990 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.432408 B = 7015.334839 C = 8899.604100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.132 3.868 3 H 0.050 0.950 4 C -0.120 4.120 5 C 0.157 3.843 6 H 0.086 0.914 7 N -0.724 5.724 8 C -0.239 4.239 9 H 0.080 0.920 10 C -0.074 4.074 11 N -0.970 5.970 12 Si 0.970 3.030 13 H -0.273 1.273 14 H -0.298 1.298 15 H -0.281 1.281 16 C 0.079 3.921 17 N -0.585 5.585 18 C 0.600 3.400 19 O -0.563 6.563 20 C -0.047 4.047 21 C -0.181 4.181 22 C -0.011 4.011 23 C 0.135 3.865 24 N -0.562 5.562 25 C 0.026 3.974 26 C 0.016 3.984 27 O 0.130 5.870 28 N -0.336 5.336 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.371 0.629 35 H 0.249 0.751 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.191 0.809 39 H 0.095 0.905 40 H 0.120 0.880 41 H 0.040 0.960 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.053 0.947 45 H 0.080 0.920 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.321 -8.912 15.381 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.029 3.971 3 H 0.068 0.932 4 C -0.158 4.158 5 C 0.047 3.953 6 H 0.104 0.896 7 N -0.363 5.363 8 C -0.371 4.371 9 H 0.098 0.902 10 C -0.266 4.266 11 N -0.621 5.621 12 Si 0.799 3.201 13 H -0.198 1.198 14 H -0.225 1.225 15 H -0.208 1.208 16 C -0.047 4.047 17 N -0.316 5.316 18 C 0.388 3.612 19 O -0.442 6.442 20 C -0.205 4.205 21 C -0.205 4.205 22 C -0.075 4.075 23 C 0.007 3.993 24 N -0.287 5.287 25 C -0.121 4.121 26 C -0.132 4.132 27 O 0.052 5.948 28 N -0.035 5.035 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.133 0.867 34 H 0.202 0.798 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.209 0.791 39 H 0.112 0.888 40 H 0.138 0.862 41 H 0.059 0.941 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.072 0.928 45 H 0.099 0.901 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.136 -9.575 14.143 21.547 hybrid contribution 0.825 1.711 0.933 2.117 sum -12.310 -7.864 15.076 20.992 Atomic orbital electron populations 1.22035 0.92672 1.02843 1.02958 1.21704 0.95615 0.95463 0.84286 0.93193 1.22996 0.97277 1.00117 0.95437 1.21647 0.86530 0.94697 0.92407 0.89625 1.42493 1.01213 1.05019 1.87569 1.19592 0.84537 0.92182 1.40768 0.90203 1.25542 1.01621 0.95746 1.03703 1.69826 1.29391 1.03419 1.59422 0.85262 0.79731 0.76830 0.78269 1.19835 1.22473 1.20762 1.23407 0.94739 0.86990 0.99538 1.48389 1.50360 1.28550 1.04333 1.16792 0.80008 0.83361 0.81087 1.90696 1.42262 1.27588 1.83679 1.23464 1.03773 0.96862 0.96354 1.22562 1.04919 1.02792 0.90180 1.24771 0.97213 0.91471 0.94045 1.20720 0.97421 0.99274 0.81916 1.61876 1.02191 1.39860 1.24758 1.22458 1.03529 1.00290 0.85828 1.22520 0.91012 0.97941 1.01710 1.84786 1.55351 1.44509 1.10111 1.74377 1.13160 1.11937 1.04032 0.93502 0.89088 0.91367 0.89720 0.86678 0.79757 0.94188 0.91440 0.90174 0.79145 0.88762 0.86224 0.94091 0.90265 0.90123 0.92830 0.90109 0.93877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.11 71.98 0.66 -3.33 16 2 C 0.13 4.43 3.45 45.34 0.16 4.59 16 3 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 4 C -0.12 -3.61 6.05 31.79 0.19 -3.42 16 5 C 0.16 5.96 3.69 46.38 0.17 6.13 16 6 H 0.09 3.04 8.13 -2.39 -0.02 3.02 16 7 N -0.72 -36.18 5.27 -316.38 -1.67 -37.84 16 8 C -0.24 -13.16 9.98 84.03 0.84 -12.32 16 9 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 10 C -0.07 -4.27 5.50 84.86 0.47 -3.81 16 11 N -0.97 -60.34 13.06 21.65 0.28 -60.06 16 12 Si 0.97 46.56 29.55 68.60 2.03 48.58 16 13 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 14 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 15 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 16 C 0.08 2.93 5.87 86.85 0.51 3.44 16 17 N -0.59 -22.20 3.06 -790.88 -2.42 -24.63 16 18 C 0.60 24.12 7.67 86.93 0.67 24.79 16 19 O -0.56 -24.26 16.00 -3.68 -0.06 -24.32 16 20 C -0.05 -1.70 7.02 42.96 0.30 -1.40 16 21 C -0.18 -5.04 9.58 22.60 0.22 -4.82 16 22 C -0.01 -0.26 6.34 25.01 0.16 -0.11 16 23 C 0.13 2.01 5.53 85.56 0.47 2.48 16 24 N -0.56 -8.32 5.01 -953.45 -4.78 -13.09 16 25 C 0.03 0.24 9.57 127.69 1.22 1.46 16 26 C 0.02 0.23 9.29 127.69 1.19 1.42 16 27 O 0.13 3.94 11.18 71.88 0.80 4.74 16 28 N -0.34 -12.03 9.30 -49.51 -0.46 -12.49 16 29 H 0.05 1.46 6.89 -2.39 -0.02 1.45 16 30 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.11 2.60 7.85 -2.38 -0.02 2.58 16 34 H 0.37 20.43 7.81 -92.71 -0.72 19.70 16 35 H 0.25 15.17 8.31 -92.71 -0.77 14.39 16 36 H 0.07 2.94 6.24 -2.39 -0.01 2.92 16 37 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.19 4.51 8.06 -2.91 -0.02 4.48 16 39 H 0.09 1.04 8.12 -2.39 -0.02 1.03 16 40 H 0.12 1.42 8.06 -2.39 -0.02 1.40 16 41 H 0.04 0.29 8.14 -2.38 -0.02 0.27 16 42 H 0.08 0.64 8.12 -2.39 -0.02 0.62 16 43 H 0.08 0.64 8.12 -2.39 -0.02 0.62 16 44 H 0.05 0.97 6.34 -2.38 -0.02 0.96 16 45 H 0.08 0.98 8.12 -2.39 -0.02 0.96 16 46 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -73.49 377.39 1.20 -72.29 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: 0.26 Total: 31.72 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 7.22 Total: 15.10 kcal Atomic # 7 Polarization: -139.06 SS G_CDS: -9.04 Total: -148.11 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.74 Total: -19.58 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Total: -73.49 1.20 -72.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989074170.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.222 kcal (2) G-P(sol) polarization free energy of solvation -73.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds