Wall clock time and date at job start Fri Apr 10 2020 18:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99837 * 2 1 4 4 C 1.52998 * 109.47378 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47734 * 179.97438 * 4 3 2 6 6 C 1.35030 * 124.88864 * 124.96967 * 5 4 3 7 7 C 1.35362 * 107.23182 * 179.76573 * 6 5 4 8 8 C 1.41499 * 105.50083 * 0.36199 * 7 6 5 9 9 C 1.47712 * 126.51955 * 179.90596 * 8 7 6 10 10 O 1.21577 * 120.00032 * 359.70253 * 9 8 7 11 11 N 1.34776 * 119.99993 * 179.71260 * 9 8 7 12 12 C 1.47017 * 125.65312 * 359.96614 * 11 9 8 13 13 C 1.54315 * 107.27451 * 179.00099 * 12 11 9 14 14 H 1.09005 * 110.72207 * 96.17382 * 13 12 11 15 15 N 1.46500 * 110.87331 * 219.37528 * 13 12 11 16 16 C 1.36943 * 119.99932 * 268.60704 * 15 13 12 17 17 H 1.07997 * 119.99971 * 0.02562 * 16 15 13 18 18 C 1.38813 * 120.00002 * 179.97438 * 16 15 13 19 19 N 1.31615 * 119.99848 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99960 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46961 * 60.00595 * 20 18 16 22 22 H 1.48501 * 109.47508 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47681 * 300.00678 * 20 18 16 24 24 C 1.55156 * 102.94436 * 337.80810 * 13 12 11 25 25 C 1.47471 * 125.62717 * 179.97438 * 11 9 8 26 26 H 1.09008 * 110.34870 * 85.22524 * 25 11 9 27 27 C 1.53001 * 110.40642 * 322.89443 * 25 11 9 28 28 N 1.28468 * 124.88292 * 304.97526 * 5 4 3 29 29 H 1.08995 * 109.47435 * 300.00196 * 1 2 3 30 30 H 1.09004 * 109.47068 * 60.00551 * 1 2 3 31 31 H 1.09007 * 109.47297 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47442 * 59.99402 * 3 2 1 33 33 H 1.09009 * 109.46995 * 299.99791 * 3 2 1 34 34 H 1.08998 * 109.47299 * 59.99344 * 4 3 2 35 35 H 1.09009 * 109.46910 * 299.99872 * 4 3 2 36 36 H 1.08004 * 126.38536 * 359.97117 * 6 5 4 37 37 H 1.08001 * 127.24993 * 180.24024 * 7 6 5 38 38 H 1.08998 * 109.88206 * 59.58080 * 12 11 9 39 39 H 1.09004 * 110.01118 * 298.49173 * 12 11 9 40 40 H 0.96999 * 120.00052 * 88.60774 * 15 13 12 41 41 H 0.97000 * 119.99817 * 180.02562 * 19 18 16 42 42 H 1.09002 * 111.00677 * 153.57697 * 24 13 12 43 43 H 1.09002 * 111.00564 * 277.38955 * 24 13 12 44 44 H 1.08998 * 109.46676 * 304.59236 * 27 25 11 45 45 H 1.09000 * 109.47559 * 64.59168 * 27 25 11 46 46 H 1.09001 * 109.47084 * 184.59703 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 4.1313 2.5231 0.0000 6 6 5.0250 2.9710 0.9077 7 6 5.3388 4.2430 0.5676 8 6 4.5732 4.5252 -0.5885 9 6 4.5598 5.7931 -1.3461 10 8 5.2520 6.7248 -0.9843 11 7 3.7800 5.9173 -2.4383 12 6 2.8982 4.8755 -2.9846 13 6 2.1890 5.4754 -4.2169 14 1 2.7125 5.2035 -5.1335 15 7 0.7897 5.0454 -4.2745 16 6 0.4488 3.9147 -4.9679 17 1 1.2116 3.3399 -5.4719 18 6 -0.8770 3.5070 -5.0221 19 7 -1.8065 4.2074 -4.4074 20 14 -1.3421 1.9652 -5.9685 21 1 -0.6307 0.7965 -5.3911 22 1 -2.8082 1.7492 -5.8734 23 1 -0.9571 2.1242 -7.3938 24 6 2.2837 7.0031 -3.9630 25 6 3.6705 7.1210 -3.2832 26 1 4.4610 7.1306 -4.0337 27 6 3.7362 8.3845 -2.4229 28 7 3.8786 3.4394 -0.8642 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8464 -0.8901 34 1 3.8574 0.6436 -0.8890 35 1 3.8567 0.6440 0.8910 36 1 5.4189 2.4164 1.7467 37 1 6.0270 4.9041 1.0733 38 1 2.1601 4.5851 -2.2370 39 1 3.4863 4.0071 -3.2816 40 1 0.1046 5.5615 -3.8215 41 1 -2.7329 3.9222 -4.4449 42 1 2.2599 7.5573 -4.9013 43 1 1.4911 7.3378 -3.2937 44 1 2.9660 8.3401 -1.6529 45 1 4.7169 8.4531 -1.9522 46 1 3.5723 9.2604 -3.0506 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989151263.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:57 Heat of formation + Delta-G solvation = 25.488439 kcal Electronic energy + Delta-G solvation = -28132.426426 eV Core-core repulsion = 24253.022756 eV Total energy + Delta-G solvation = -3879.403670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.64178 -39.65584 -38.07005 -37.16985 -34.14026 -34.03570 -31.79606 -31.34112 -30.53460 -29.35207 -28.35620 -26.47325 -25.30081 -24.51973 -23.70902 -22.52453 -21.42478 -20.78228 -20.16916 -18.78907 -17.44053 -17.26686 -16.67185 -16.45460 -16.15052 -15.89381 -15.69486 -14.95630 -14.78792 -14.43721 -13.90710 -13.78327 -13.61223 -13.44292 -13.27173 -13.22226 -12.87334 -12.59154 -12.16910 -12.01983 -11.84399 -11.75538 -11.66999 -11.44802 -11.20362 -11.04592 -10.85909 -10.65543 -10.52486 -10.28979 -10.03363 -9.83677 -9.73896 -9.55191 -9.23935 -9.06636 -8.97804 -8.19083 -7.07352 -5.84219 -3.14202 1.71546 2.14407 2.25698 3.29359 3.38384 3.43582 3.44189 3.64487 3.70479 4.31151 4.51658 4.66259 4.70788 4.75696 4.94486 5.06124 5.19223 5.24813 5.30521 5.31796 5.40337 5.45269 5.54133 5.62542 5.63159 5.66533 5.69238 5.75395 5.80639 5.90007 5.97355 6.19407 6.21497 6.34965 6.40992 6.50235 6.56711 6.65787 6.72678 6.80822 6.90749 6.99342 7.63768 7.86201 7.96630 8.33345 8.50352 9.45161 10.00081 10.35448 11.37816 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.007688 B = 0.005758 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3641.030620 B = 4861.965487 C = 8053.946618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.048 3.952 4 C 0.127 3.873 5 N -0.284 5.284 6 C -0.021 4.021 7 C -0.181 4.181 8 C -0.011 4.011 9 C 0.615 3.385 10 O -0.546 6.546 11 N -0.596 5.596 12 C 0.087 3.913 13 C 0.169 3.831 14 H 0.066 0.934 15 N -0.711 5.711 16 C -0.243 4.243 17 H 0.071 0.929 18 C -0.009 4.009 19 N -0.931 5.931 20 Si 0.905 3.095 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.285 1.285 24 C -0.138 4.138 25 C 0.137 3.863 26 H 0.074 0.926 27 C -0.160 4.160 28 N -0.242 5.242 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.180 0.820 37 H 0.161 0.839 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.053 0.947 45 H 0.080 0.920 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.929 -3.364 10.659 15.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.310 6.310 3 C -0.030 4.030 4 C 0.006 3.994 5 N -0.073 5.073 6 C -0.163 4.163 7 C -0.209 4.209 8 C -0.172 4.172 9 C 0.401 3.599 10 O -0.423 6.423 11 N -0.329 5.329 12 C -0.039 4.039 13 C 0.057 3.943 14 H 0.084 0.916 15 N -0.351 5.351 16 C -0.374 4.374 17 H 0.089 0.911 18 C -0.205 4.205 19 N -0.579 5.579 20 Si 0.736 3.264 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.211 1.211 24 C -0.177 4.177 25 C 0.034 3.966 26 H 0.092 0.908 27 C -0.218 4.218 28 N -0.077 5.077 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.198 0.802 37 H 0.179 0.821 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.221 0.779 41 H 0.066 0.934 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.072 0.928 45 H 0.099 0.901 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.541 -3.788 10.026 15.033 hybrid contribution -0.280 -0.441 0.336 0.621 sum 10.261 -4.228 10.362 15.183 Atomic orbital electron populations 1.22812 0.79530 1.02983 1.01040 1.87712 1.20940 1.26644 1.95716 1.22658 0.91713 0.85778 1.02844 1.21667 0.93466 0.78400 1.05884 1.45442 1.31136 1.11697 1.19054 1.22842 0.98207 0.96714 0.98510 1.21728 1.04687 0.95970 0.98522 1.21980 1.01524 0.94205 0.99461 1.16530 0.79337 0.84912 0.79073 1.90700 1.43530 1.39281 1.68831 1.48470 1.42374 1.16034 1.26044 1.23256 0.92550 0.89820 0.98285 1.21233 0.87645 0.90861 0.94573 0.91573 1.42348 1.01119 1.29830 1.61817 1.19220 0.92294 1.01146 1.24777 0.91072 1.24729 0.95824 0.99127 1.00843 1.69654 1.00556 1.40229 1.47449 0.86307 0.77194 0.83060 0.79870 1.21205 1.21686 1.21142 1.23177 0.95291 0.98556 1.00630 1.21894 0.97753 0.85027 0.91928 0.90838 1.22126 1.04037 0.95864 0.99733 1.73846 1.21539 0.97534 1.14814 0.93936 0.92765 0.89312 0.92719 0.90401 0.87887 0.87227 0.80250 0.82148 0.90620 0.92052 0.77931 0.93399 0.90176 0.90579 0.92764 0.90075 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.39 -4.96 10.70 -35.23 -0.38 -5.34 16 3 C 0.05 0.59 6.04 37.16 0.22 0.81 16 4 C 0.13 1.28 6.77 -4.04 -0.03 1.25 16 5 N -0.28 -3.56 3.41 -61.33 -0.21 -3.77 16 6 C -0.02 -0.22 11.40 -17.17 -0.20 -0.42 16 7 C -0.18 -2.39 10.81 -39.37 -0.43 -2.82 16 8 C -0.01 -0.18 6.98 -82.77 -0.58 -0.76 16 9 C 0.61 11.05 7.64 -12.39 -0.09 10.95 16 10 O -0.55 -10.45 14.65 5.30 0.08 -10.37 16 11 N -0.60 -10.42 3.24 -164.18 -0.53 -10.95 16 12 C 0.09 1.62 5.30 -3.07 -0.02 1.60 16 13 C 0.17 3.28 3.61 -66.10 -0.24 3.04 16 14 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 15 N -0.71 -17.06 5.16 -51.65 -0.27 -17.33 16 16 C -0.24 -6.45 9.96 -15.06 -0.15 -6.60 16 17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 19 N -0.93 -27.07 13.06 55.49 0.72 -26.34 16 20 Si 0.90 21.61 29.55 -169.99 -5.02 16.59 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C -0.14 -2.26 6.13 -24.59 -0.15 -2.41 16 25 C 0.14 2.14 3.77 -66.40 -0.25 1.89 16 26 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 27 C -0.16 -2.35 8.60 37.16 0.32 -2.03 16 28 N -0.24 -3.86 9.19 33.42 0.31 -3.55 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.18 8.09 -51.92 -0.42 0.76 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.11 0.75 8.04 -51.92 -0.42 0.33 16 36 H 0.18 1.12 8.06 -52.48 -0.42 0.70 16 37 H 0.16 1.88 8.06 -52.49 -0.42 1.45 16 38 H 0.08 1.58 7.55 -51.93 -0.39 1.19 16 39 H 0.06 1.17 7.77 -51.93 -0.40 0.76 16 40 H 0.39 9.92 7.76 -40.82 -0.32 9.60 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.08 1.31 7.93 -51.93 -0.41 0.90 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.08 1.29 6.09 -51.93 -0.32 0.98 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 380.63 15.07 5.74 5.74 Total: -1.00 -31.95 380.63 -7.42 -39.37 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -7.29 Total: 10.30 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -0.57 Total: 5.65 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: 0.02 Total: -61.93 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.30 Total: -15.71 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.95 -7.42 -39.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989151263.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.857 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds