Wall clock time and date at job start Fri Apr 10 2020 18:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 113.99837 * 2 1 4 4 C 1.52998 * 109.47378 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47734 * 179.97438 * 4 3 2 6 6 C 1.35030 * 124.88864 * 124.96967 * 5 4 3 7 7 C 1.35362 * 107.23182 * 179.76573 * 6 5 4 8 8 C 1.41499 * 105.50083 * 0.36199 * 7 6 5 9 9 C 1.47712 * 126.51955 * 179.90596 * 8 7 6 10 10 O 1.21577 * 120.00032 * 359.70253 * 9 8 7 11 11 N 1.34776 * 119.99993 * 179.71260 * 9 8 7 12 12 C 1.47017 * 125.65312 * 359.96614 * 11 9 8 13 13 C 1.54315 * 107.27451 * 179.00099 * 12 11 9 14 14 H 1.09005 * 110.72207 * 96.17382 * 13 12 11 15 15 N 1.46500 * 110.87331 * 219.37528 * 13 12 11 16 16 C 1.36943 * 119.99932 * 268.60704 * 15 13 12 17 17 H 1.07997 * 119.99971 * 0.02562 * 16 15 13 18 18 C 1.38813 * 120.00002 * 179.97438 * 16 15 13 19 19 N 1.31615 * 119.99848 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99960 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46961 * 60.00595 * 20 18 16 22 22 H 1.48501 * 109.47508 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47681 * 300.00678 * 20 18 16 24 24 C 1.55156 * 102.94436 * 337.80810 * 13 12 11 25 25 C 1.47471 * 125.62717 * 179.97438 * 11 9 8 26 26 H 1.09008 * 110.34870 * 85.22524 * 25 11 9 27 27 C 1.53001 * 110.40642 * 322.89443 * 25 11 9 28 28 N 1.28468 * 124.88292 * 304.97526 * 5 4 3 29 29 H 1.08995 * 109.47435 * 300.00196 * 1 2 3 30 30 H 1.09004 * 109.47068 * 60.00551 * 1 2 3 31 31 H 1.09007 * 109.47297 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47442 * 59.99402 * 3 2 1 33 33 H 1.09009 * 109.46995 * 299.99791 * 3 2 1 34 34 H 1.08998 * 109.47299 * 59.99344 * 4 3 2 35 35 H 1.09009 * 109.46910 * 299.99872 * 4 3 2 36 36 H 1.08004 * 126.38536 * 359.97117 * 6 5 4 37 37 H 1.08001 * 127.24993 * 180.24024 * 7 6 5 38 38 H 1.08998 * 109.88206 * 59.58080 * 12 11 9 39 39 H 1.09004 * 110.01118 * 298.49173 * 12 11 9 40 40 H 0.96999 * 120.00052 * 88.60774 * 15 13 12 41 41 H 0.97000 * 119.99817 * 180.02562 * 19 18 16 42 42 H 1.09002 * 111.00677 * 153.57697 * 24 13 12 43 43 H 1.09002 * 111.00564 * 277.38955 * 24 13 12 44 44 H 1.08998 * 109.46676 * 304.59236 * 27 25 11 45 45 H 1.09000 * 109.47559 * 64.59168 * 27 25 11 46 46 H 1.09001 * 109.47084 * 184.59703 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 4.1313 2.5231 0.0000 6 6 5.0250 2.9710 0.9077 7 6 5.3388 4.2430 0.5676 8 6 4.5732 4.5252 -0.5885 9 6 4.5598 5.7931 -1.3461 10 8 5.2520 6.7248 -0.9843 11 7 3.7800 5.9173 -2.4383 12 6 2.8982 4.8755 -2.9846 13 6 2.1890 5.4754 -4.2169 14 1 2.7125 5.2035 -5.1335 15 7 0.7897 5.0454 -4.2745 16 6 0.4488 3.9147 -4.9679 17 1 1.2116 3.3399 -5.4719 18 6 -0.8770 3.5070 -5.0221 19 7 -1.8065 4.2074 -4.4074 20 14 -1.3421 1.9652 -5.9685 21 1 -0.6307 0.7965 -5.3911 22 1 -2.8082 1.7492 -5.8734 23 1 -0.9571 2.1242 -7.3938 24 6 2.2837 7.0031 -3.9630 25 6 3.6705 7.1210 -3.2832 26 1 4.4610 7.1306 -4.0337 27 6 3.7362 8.3845 -2.4229 28 7 3.8786 3.4394 -0.8642 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8464 -0.8901 34 1 3.8574 0.6436 -0.8890 35 1 3.8567 0.6440 0.8910 36 1 5.4189 2.4164 1.7467 37 1 6.0270 4.9041 1.0733 38 1 2.1601 4.5851 -2.2370 39 1 3.4863 4.0071 -3.2816 40 1 0.1046 5.5615 -3.8215 41 1 -2.7329 3.9222 -4.4449 42 1 2.2599 7.5573 -4.9013 43 1 1.4911 7.3378 -3.2937 44 1 2.9660 8.3401 -1.6529 45 1 4.7169 8.4531 -1.9522 46 1 3.5723 9.2604 -3.0506 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989151263.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:28:56 Heat of formation + Delta-G solvation = 3.822943 kcal Electronic energy + Delta-G solvation = -28133.365913 eV Core-core repulsion = 24253.022756 eV Total energy + Delta-G solvation = -3880.343156 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.66486 -41.05416 -39.05663 -38.64287 -35.96872 -35.02920 -33.31381 -32.94569 -31.57962 -30.40139 -30.05982 -27.44885 -26.68204 -26.00298 -25.31243 -23.65508 -22.50049 -21.95836 -21.71707 -20.01909 -19.21947 -18.46467 -17.81710 -17.73879 -17.26757 -17.04135 -16.85915 -16.57217 -15.99138 -15.77802 -15.44104 -15.23671 -14.83734 -14.78786 -14.57006 -14.33264 -14.21018 -13.90460 -13.50476 -13.30985 -13.11070 -13.02292 -12.90481 -12.80231 -12.66821 -12.42864 -12.37672 -12.21938 -12.12913 -11.75505 -11.69820 -11.54971 -11.04100 -10.85009 -10.81563 -10.29095 -10.08762 -9.61126 -9.07025 -7.94823 -5.24653 0.53554 1.18317 1.34245 1.47493 1.49305 1.55294 1.98871 2.36885 2.55539 2.72939 3.31948 3.36286 3.55919 3.78798 3.80738 3.85849 3.90632 3.98538 4.10591 4.18398 4.20718 4.32136 4.37490 4.44397 4.49806 4.50637 4.56909 4.65397 4.73870 4.75956 4.77354 4.78348 4.85702 4.93192 5.12575 5.18104 5.22805 5.32491 5.36661 5.52362 5.57752 5.83334 5.95110 6.25355 6.47402 6.83823 7.16766 7.32997 8.03904 8.29316 9.27956 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.007688 B = 0.005758 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3641.030620 B = 4861.965487 C = 8053.946618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.396 6.396 3 C 0.052 3.948 4 C 0.127 3.873 5 N -0.282 5.282 6 C 0.009 3.991 7 C -0.198 4.198 8 C -0.044 4.044 9 C 0.609 3.391 10 O -0.563 6.563 11 N -0.600 5.600 12 C 0.111 3.889 13 C 0.163 3.837 14 H 0.071 0.929 15 N -0.721 5.721 16 C -0.242 4.242 17 H 0.076 0.924 18 C -0.067 4.067 19 N -0.967 5.967 20 Si 0.966 3.034 21 H -0.279 1.279 22 H -0.296 1.296 23 H -0.277 1.277 24 C -0.124 4.124 25 C 0.135 3.865 26 H 0.090 0.910 27 C -0.150 4.150 28 N -0.277 5.277 29 H 0.055 0.945 30 H 0.028 0.972 31 H 0.111 0.889 32 H 0.059 0.941 33 H 0.036 0.964 34 H 0.104 0.896 35 H 0.156 0.844 36 H 0.234 0.766 37 H 0.172 0.828 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.375 0.625 41 H 0.251 0.749 42 H 0.101 0.899 43 H 0.065 0.935 44 H 0.039 0.961 45 H 0.069 0.931 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.538 -4.568 11.515 17.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.314 6.314 3 C -0.026 4.026 4 C 0.008 3.992 5 N -0.072 5.072 6 C -0.133 4.133 7 C -0.226 4.226 8 C -0.203 4.203 9 C 0.397 3.603 10 O -0.442 6.442 11 N -0.333 5.333 12 C -0.015 4.015 13 C 0.052 3.948 14 H 0.089 0.911 15 N -0.360 5.360 16 C -0.373 4.373 17 H 0.094 0.906 18 C -0.259 4.259 19 N -0.617 5.617 20 Si 0.795 3.205 21 H -0.205 1.205 22 H -0.222 1.222 23 H -0.203 1.203 24 C -0.163 4.163 25 C 0.033 3.967 26 H 0.108 0.892 27 C -0.208 4.208 28 N -0.114 5.114 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.130 0.870 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.122 0.878 35 H 0.174 0.826 36 H 0.250 0.750 37 H 0.189 0.811 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.207 0.793 41 H 0.060 0.940 42 H 0.120 0.880 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.088 0.912 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.198 -4.982 10.867 17.079 hybrid contribution -0.726 -0.089 0.136 0.744 sum 11.472 -5.071 11.003 16.686 Atomic orbital electron populations 1.22934 0.79075 1.04333 1.00418 1.87698 1.21514 1.26592 1.95623 1.22561 0.93518 0.85436 1.01068 1.21906 0.91566 0.77517 1.08228 1.45719 1.31073 1.11776 1.18650 1.23578 0.95794 0.95758 0.98211 1.22005 1.05117 0.97515 0.97931 1.22013 1.03334 0.93969 1.00993 1.16869 0.78906 0.85560 0.78975 1.90674 1.44173 1.40081 1.69226 1.48515 1.42161 1.16190 1.26403 1.22750 0.91881 0.89879 0.97011 1.21411 0.85429 0.93066 0.94866 0.91096 1.42453 1.02696 1.29273 1.61559 1.19570 0.92421 1.01525 1.23832 0.90579 1.25463 0.95960 1.02096 1.02406 1.69805 1.00496 1.41965 1.49410 0.85329 0.76400 0.79910 0.78853 1.20544 1.22203 1.20337 1.23079 0.95489 0.96214 1.01515 1.22060 0.97579 0.84898 0.92206 0.89192 1.22030 1.02804 0.96367 0.99557 1.73786 1.22570 0.98329 1.16679 0.92663 0.95311 0.87024 0.92266 0.94512 0.87811 0.82599 0.74984 0.81067 0.93302 0.92735 0.79254 0.94014 0.88038 0.91578 0.94144 0.91204 0.89517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.88 16 2 O -0.40 -9.64 10.70 -148.98 -1.59 -11.24 16 3 C 0.05 1.26 6.04 71.98 0.44 1.70 16 4 C 0.13 2.29 6.77 86.38 0.58 2.87 16 5 N -0.28 -6.59 3.41 -347.95 -1.19 -7.78 16 6 C 0.01 0.15 11.40 83.54 0.95 1.11 16 7 C -0.20 -4.92 10.81 22.41 0.24 -4.68 16 8 C -0.04 -1.45 6.98 42.46 0.30 -1.15 16 9 C 0.61 22.20 7.64 86.75 0.66 22.87 16 10 O -0.56 -21.68 14.65 -3.96 -0.06 -21.74 16 11 N -0.60 -21.24 3.24 -791.61 -2.57 -23.81 16 12 C 0.11 4.27 5.30 86.73 0.46 4.73 16 13 C 0.16 6.38 3.61 46.18 0.17 6.54 16 14 H 0.07 2.72 8.09 -2.38 -0.02 2.70 16 15 N -0.72 -35.39 5.16 -317.33 -1.64 -37.02 16 16 C -0.24 -13.00 9.96 84.03 0.84 -12.17 16 17 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 18 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 19 N -0.97 -57.64 13.06 21.65 0.28 -57.35 16 20 Si 0.97 44.92 29.55 68.60 2.03 46.95 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 C -0.12 -4.01 6.13 31.98 0.20 -3.82 16 25 C 0.13 4.13 3.77 45.45 0.17 4.30 16 26 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 27 C -0.15 -4.28 8.60 71.98 0.62 -3.66 16 28 N -0.28 -8.90 9.19 -48.18 -0.44 -9.35 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.04 1.19 8.09 -2.38 -0.02 1.17 16 34 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.16 1.39 8.04 -2.38 -0.02 1.37 16 36 H 0.23 1.53 8.06 -2.91 -0.02 1.50 16 37 H 0.17 3.74 8.06 -2.91 -0.02 3.72 16 38 H 0.05 2.15 7.55 -2.39 -0.02 2.13 16 39 H 0.05 2.15 7.77 -2.38 -0.02 2.13 16 40 H 0.38 19.92 7.76 -92.71 -0.72 19.20 16 41 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 42 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 43 H 0.07 2.29 7.93 -2.39 -0.02 2.27 16 44 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.07 2.18 6.09 -2.39 -0.01 2.17 16 46 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -71.73 380.63 2.42 -69.31 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: 0.26 Total: 34.76 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 7.34 Total: 17.27 kcal Atomic # 7 Polarization: -129.76 SS G_CDS: -5.55 Total: -135.31 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -1.65 Total: -32.98 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -71.73 2.42 -69.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989151263.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.134 kcal (2) G-P(sol) polarization free energy of solvation -71.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds