Wall clock time and date at job start Fri Apr 10 2020 18:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.70420 * 2 1 4 4 C 1.52759 * 109.51100 * 239.88509 * 2 1 3 5 5 H 1.09003 * 109.56821 * 65.66703 * 4 2 1 6 6 N 1.46506 * 109.38736 * 305.63338 * 4 2 1 7 7 C 1.34774 * 120.00058 * 155.13939 * 6 4 2 8 8 O 1.21698 * 120.00258 * 0.02562 * 7 6 4 9 9 C 1.46657 * 119.99870 * 179.97438 * 7 6 4 10 10 C 1.35146 * 126.37622 * 359.69606 * 9 7 6 11 11 N 1.37015 * 107.87689 * 179.83969 * 10 9 7 12 12 C 1.46503 * 125.65356 * 180.14360 * 11 10 9 13 13 C 1.34625 * 108.69374 * 0.42547 * 11 10 9 14 14 O 1.21728 * 125.72620 * 179.71994 * 13 11 10 15 15 N 1.34755 * 108.54436 * 359.73816 * 13 11 10 16 16 C 1.46505 * 126.17755 * 179.97438 * 15 13 11 17 17 C 1.53041 * 109.38707 * 185.70600 * 4 2 1 18 18 C 1.53045 * 109.53592 * 61.23917 * 17 4 2 19 19 C 1.53189 * 109.31297 * 298.63583 * 18 17 4 20 20 N 1.46922 * 108.77735 * 54.63578 * 19 18 17 21 21 C 1.36937 * 120.63368 * 126.36580 * 20 19 18 22 22 H 1.07998 * 120.00444 * 209.60771 * 21 20 19 23 23 C 1.38814 * 119.99726 * 29.61141 * 21 20 19 24 24 N 1.31611 * 120.00069 * 24.21894 * 23 21 20 25 25 Si 1.86804 * 119.99637 * 204.22524 * 23 21 20 26 26 H 1.48504 * 109.47288 * 59.99819 * 25 23 21 27 27 H 1.48499 * 109.47032 * 299.99597 * 25 23 21 28 28 H 1.48501 * 109.46809 * 179.97438 * 25 23 21 29 29 H 1.08999 * 109.47268 * 299.64371 * 1 2 3 30 30 H 1.08998 * 109.46957 * 59.64307 * 1 2 3 31 31 H 1.09002 * 109.46976 * 179.64150 * 1 2 3 32 32 H 0.97004 * 119.99492 * 335.14409 * 6 4 2 33 33 H 1.08001 * 126.06050 * 359.97438 * 10 9 7 34 34 H 1.08998 * 109.47015 * 180.30201 * 12 11 10 35 35 H 1.08994 * 109.47234 * 300.30821 * 12 11 10 36 36 H 1.09004 * 109.46646 * 60.30704 * 12 11 10 37 37 H 1.08998 * 109.47388 * 270.00383 * 16 15 13 38 38 H 1.08997 * 109.47033 * 30.00588 * 16 15 13 39 39 H 1.09003 * 109.46871 * 150.00115 * 16 15 13 40 40 H 1.08997 * 109.45639 * 301.22004 * 17 4 2 41 41 H 1.09002 * 109.45992 * 181.25973 * 17 4 2 42 42 H 1.09003 * 109.49687 * 178.68612 * 18 17 4 43 43 H 1.08997 * 109.52212 * 58.60565 * 18 17 4 44 44 H 1.08999 * 109.58826 * 294.84945 * 19 18 17 45 45 H 1.09000 * 109.58769 * 174.42409 * 19 18 17 46 46 H 0.96998 * 120.00471 * 4.07987 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0402 -0.7224 -1.2455 5 1 1.7632 -0.1565 -2.1350 6 7 1.4437 -2.0590 -1.3111 7 6 1.3201 -2.6842 -2.4986 8 8 1.7044 -2.1388 -3.5164 9 6 0.7235 -4.0224 -2.5641 10 6 0.2624 -4.7463 -1.5203 11 7 -0.2155 -5.9334 -2.0101 12 6 -0.8090 -7.0093 -1.2124 13 6 -0.0437 -5.9496 -3.3453 14 8 -0.3552 -6.8599 -4.0910 15 7 0.5313 -4.7892 -3.7175 16 6 0.8907 -4.4013 -5.0838 17 6 3.5638 -0.8461 -1.1727 18 6 3.9523 -1.6687 0.0581 19 6 3.4644 -0.9520 1.3210 20 7 2.0226 -0.6996 1.1945 21 6 1.1536 -1.1136 2.1685 22 1 0.1375 -1.3731 1.9109 23 6 1.5789 -1.1996 3.4871 24 7 2.5948 -0.4716 3.8997 25 14 0.7095 -2.3488 4.6758 26 1 0.8062 -3.7438 4.1758 27 1 -0.7196 -1.9598 4.7844 28 1 1.3510 -2.2566 6.0119 29 1 -0.3634 0.5083 0.8931 30 1 -0.3633 0.5194 -0.8868 31 1 -0.3633 -1.0277 -0.0064 32 1 1.1377 -2.4938 -0.4998 33 1 0.2674 -4.4422 -0.4840 34 1 -1.0937 -7.8327 -1.8675 35 1 -0.0825 -7.3620 -0.4803 36 1 -1.6923 -6.6338 -0.6958 37 1 1.9092 -4.7255 -5.2976 38 1 0.2043 -4.8721 -5.7876 39 1 0.8260 -3.3177 -5.1828 40 1 4.0057 0.1476 -1.0996 41 1 3.9313 -1.3416 -2.0714 42 1 5.0363 -1.7761 0.0965 43 1 3.4909 -2.6543 -0.0021 44 1 3.9929 -0.0050 1.4310 45 1 3.6504 -1.5799 2.1924 46 1 3.0085 0.1682 3.2994 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994482187.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:11 Heat of formation + Delta-G solvation = 6.346601 kcal Electronic energy + Delta-G solvation = -29044.199221 eV Core-core repulsion = 25163.965498 eV Total energy + Delta-G solvation = -3880.233722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.50039 -39.79369 -37.84081 -36.81325 -35.44607 -34.26093 -32.69897 -32.02485 -30.61973 -29.39792 -27.90930 -26.36670 -26.14721 -25.00719 -23.54475 -21.97505 -21.11056 -20.80827 -20.31500 -18.87297 -18.04390 -17.11224 -16.85259 -16.65361 -15.71715 -15.33053 -15.09575 -14.91853 -14.64253 -14.32719 -14.22975 -14.03684 -13.71728 -13.65189 -13.38583 -13.13122 -13.01996 -12.74353 -12.68812 -12.30331 -11.92698 -11.60665 -11.52951 -11.32190 -11.10273 -10.89936 -10.72757 -10.64695 -10.31831 -10.16098 -10.15813 -10.02492 -9.88235 -9.79001 -9.23738 -8.76478 -8.46322 -7.86773 -6.97648 -6.16541 -3.36281 1.32927 2.07199 2.74778 2.93095 3.35450 3.39940 3.40689 3.60042 3.69820 4.46532 4.54342 4.90967 4.97257 4.99934 5.06029 5.07059 5.19834 5.25384 5.36405 5.36859 5.38583 5.47574 5.54776 5.64561 5.75265 5.85809 5.94719 6.06172 6.10801 6.24355 6.26450 6.32367 6.41512 6.47074 6.55211 6.57019 6.72200 6.81392 6.89404 7.00521 7.10251 7.13117 7.78475 7.90089 8.12627 8.37137 8.47907 8.99738 9.73999 10.18740 11.12130 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013156 B = 0.004573 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.861259 B = 6121.861252 C = 7516.476848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.160 3.840 3 H 0.039 0.961 4 C 0.138 3.862 5 H 0.080 0.920 6 N -0.688 5.688 7 C 0.587 3.413 8 O -0.550 6.550 9 C -0.033 4.033 10 C 0.056 3.944 11 N -0.523 5.523 12 C 0.092 3.908 13 C 0.647 3.353 14 O -0.572 6.572 15 N -0.510 5.510 16 C 0.102 3.898 17 C -0.122 4.122 18 C -0.135 4.135 19 C 0.151 3.849 20 N -0.593 5.593 21 C -0.356 4.356 22 H 0.062 0.938 23 C -0.019 4.019 24 N -0.913 5.913 25 Si 1.063 2.937 26 H -0.294 1.294 27 H -0.293 1.293 28 H -0.286 1.286 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.054 0.946 32 H 0.410 0.590 33 H 0.194 0.806 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.057 0.943 44 H 0.017 0.983 45 H 0.078 0.922 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.513 -6.443 -9.436 11.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.053 3.947 3 H 0.056 0.944 4 C 0.032 3.968 5 H 0.098 0.902 6 N -0.339 5.339 7 C 0.373 3.627 8 O -0.430 6.430 9 C -0.141 4.141 10 C -0.074 4.074 11 N -0.240 5.240 12 C -0.049 4.049 13 C 0.350 3.650 14 O -0.451 6.451 15 N -0.230 5.230 16 C -0.039 4.039 17 C -0.160 4.160 18 C -0.174 4.174 19 C 0.025 3.975 20 N -0.318 5.318 21 C -0.485 4.485 22 H 0.080 0.920 23 C -0.223 4.223 24 N -0.552 5.552 25 Si 0.893 3.107 26 H -0.221 1.221 27 H -0.220 1.220 28 H -0.212 1.212 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.247 0.753 33 H 0.211 0.789 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.118 0.882 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.035 0.965 45 H 0.096 0.904 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.485 -7.314 -9.141 12.215 hybrid contribution -0.070 0.440 -1.061 1.151 sum -3.555 -6.874 -10.202 12.806 Atomic orbital electron populations 1.21758 0.95283 1.01503 1.00513 1.20635 0.93696 0.93756 0.86604 0.94363 1.21515 0.92825 0.82418 1.00080 0.90153 1.45732 1.61054 1.18848 1.08241 1.16722 0.78641 0.82915 0.84431 1.90764 1.51095 1.66825 1.34287 1.19810 1.12217 0.96399 0.85709 1.22196 0.99957 0.85720 0.99495 1.44920 1.54479 1.16959 1.07665 1.21892 0.98775 0.88829 0.95449 1.16136 0.82936 0.83603 0.82349 1.91014 1.60461 1.38001 1.55617 1.45149 1.55038 1.15115 1.07695 1.21846 1.00953 1.03137 0.77958 1.21783 0.95393 1.00545 0.98328 1.22023 0.99168 0.99568 0.96664 1.20972 0.84216 0.96824 0.95484 1.44234 1.02666 1.65268 1.19669 1.19896 0.96046 1.44244 0.88275 0.92023 1.25827 1.00124 1.00557 0.95766 1.70773 1.25599 1.21146 1.37693 0.83544 0.75078 0.75720 0.76395 1.22080 1.22016 1.21207 0.91733 0.94177 0.92737 0.75333 0.78932 0.88856 0.90216 0.90221 0.91551 0.90272 0.88203 0.91748 0.92698 0.93180 0.92460 0.96507 0.90397 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 7.72 37.16 0.29 -1.93 16 2 C 0.16 2.87 3.18 -67.82 -0.22 2.65 16 3 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.14 2.19 2.32 -68.03 -0.16 2.04 16 5 H 0.08 1.29 7.58 -51.93 -0.39 0.90 16 6 N -0.69 -10.22 3.43 -55.22 -0.19 -10.41 16 7 C 0.59 8.91 7.75 -12.86 -0.10 8.82 16 8 O -0.55 -9.54 14.49 5.19 0.08 -9.46 16 9 C -0.03 -0.45 6.88 -81.91 -0.56 -1.02 16 10 C 0.06 0.65 10.91 -16.34 -0.18 0.48 16 11 N -0.52 -6.34 3.12 -128.78 -0.40 -6.74 16 12 C 0.09 0.76 11.16 59.85 0.67 1.43 16 13 C 0.65 9.84 8.49 -87.07 -0.74 9.10 16 14 O -0.57 -10.20 17.35 5.16 0.09 -10.11 16 15 N -0.51 -7.36 3.21 -124.82 -0.40 -7.76 16 16 C 0.10 1.27 10.57 59.85 0.63 1.91 16 17 C -0.12 -1.94 5.58 -26.69 -0.15 -2.09 16 18 C -0.13 -2.30 5.93 -26.61 -0.16 -2.46 16 19 C 0.15 3.10 4.69 -3.71 -0.02 3.09 16 20 N -0.59 -12.41 2.50 -165.03 -0.41 -12.82 16 21 C -0.36 -8.31 8.48 -15.06 -0.13 -8.44 16 22 H 0.06 1.41 6.28 -52.49 -0.33 1.08 16 23 C -0.02 -0.49 4.69 -17.43 -0.08 -0.57 16 24 N -0.91 -25.06 12.52 55.49 0.69 -24.37 16 25 Si 1.06 22.64 29.98 -169.99 -5.10 17.54 16 26 H -0.29 -5.90 7.11 56.52 0.40 -5.50 16 27 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 28 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 29 H 0.06 1.19 7.62 -51.93 -0.40 0.79 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.88 6.37 -51.93 -0.33 0.55 16 32 H 0.41 6.07 6.59 -40.82 -0.27 5.80 16 33 H 0.19 1.79 7.37 -52.49 -0.39 1.40 16 34 H 0.09 0.81 7.68 -51.93 -0.40 0.41 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 39 H 0.10 1.27 6.45 -51.93 -0.33 0.94 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.99 7.53 -51.93 -0.39 0.60 16 44 H 0.02 0.36 7.84 -51.93 -0.41 -0.04 16 45 H 0.08 1.83 6.42 -51.93 -0.33 1.50 16 46 H 0.27 7.51 6.63 -40.82 -0.27 7.24 16 LS Contribution 363.85 15.07 5.48 5.48 Total: -1.00 -30.86 363.85 -7.90 -38.76 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.84 Total: 6.91 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: -0.90 Total: 12.99 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: -0.71 Total: -62.11 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: 0.16 Total: -19.57 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.10 Total: 17.54 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.86 -7.90 -38.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994482187.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.107 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds