Wall clock time and date at job start Fri Apr 10 2020 18:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.70420 * 2 1 4 4 C 1.52759 * 109.51100 * 239.88509 * 2 1 3 5 5 H 1.09003 * 109.56821 * 65.66703 * 4 2 1 6 6 N 1.46506 * 109.38736 * 305.63338 * 4 2 1 7 7 C 1.34774 * 120.00058 * 155.13939 * 6 4 2 8 8 O 1.21698 * 120.00258 * 0.02562 * 7 6 4 9 9 C 1.46657 * 119.99870 * 179.97438 * 7 6 4 10 10 C 1.35146 * 126.37622 * 359.69606 * 9 7 6 11 11 N 1.37015 * 107.87689 * 179.83969 * 10 9 7 12 12 C 1.46503 * 125.65356 * 180.14360 * 11 10 9 13 13 C 1.34625 * 108.69374 * 0.42547 * 11 10 9 14 14 O 1.21728 * 125.72620 * 179.71994 * 13 11 10 15 15 N 1.34755 * 108.54436 * 359.73816 * 13 11 10 16 16 C 1.46505 * 126.17755 * 179.97438 * 15 13 11 17 17 C 1.53041 * 109.38707 * 185.70600 * 4 2 1 18 18 C 1.53045 * 109.53592 * 61.23917 * 17 4 2 19 19 C 1.53189 * 109.31297 * 298.63583 * 18 17 4 20 20 N 1.46922 * 108.77735 * 54.63578 * 19 18 17 21 21 C 1.36937 * 120.63368 * 126.36580 * 20 19 18 22 22 H 1.07998 * 120.00444 * 209.60771 * 21 20 19 23 23 C 1.38814 * 119.99726 * 29.61141 * 21 20 19 24 24 N 1.31611 * 120.00069 * 24.21894 * 23 21 20 25 25 Si 1.86804 * 119.99637 * 204.22524 * 23 21 20 26 26 H 1.48504 * 109.47288 * 59.99819 * 25 23 21 27 27 H 1.48499 * 109.47032 * 299.99597 * 25 23 21 28 28 H 1.48501 * 109.46809 * 179.97438 * 25 23 21 29 29 H 1.08999 * 109.47268 * 299.64371 * 1 2 3 30 30 H 1.08998 * 109.46957 * 59.64307 * 1 2 3 31 31 H 1.09002 * 109.46976 * 179.64150 * 1 2 3 32 32 H 0.97004 * 119.99492 * 335.14409 * 6 4 2 33 33 H 1.08001 * 126.06050 * 359.97438 * 10 9 7 34 34 H 1.08998 * 109.47015 * 180.30201 * 12 11 10 35 35 H 1.08994 * 109.47234 * 300.30821 * 12 11 10 36 36 H 1.09004 * 109.46646 * 60.30704 * 12 11 10 37 37 H 1.08998 * 109.47388 * 270.00383 * 16 15 13 38 38 H 1.08997 * 109.47033 * 30.00588 * 16 15 13 39 39 H 1.09003 * 109.46871 * 150.00115 * 16 15 13 40 40 H 1.08997 * 109.45639 * 301.22004 * 17 4 2 41 41 H 1.09002 * 109.45992 * 181.25973 * 17 4 2 42 42 H 1.09003 * 109.49687 * 178.68612 * 18 17 4 43 43 H 1.08997 * 109.52212 * 58.60565 * 18 17 4 44 44 H 1.08999 * 109.58826 * 294.84945 * 19 18 17 45 45 H 1.09000 * 109.58769 * 174.42409 * 19 18 17 46 46 H 0.96998 * 120.00471 * 4.07987 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0402 -0.7224 -1.2455 5 1 1.7632 -0.1565 -2.1350 6 7 1.4437 -2.0590 -1.3111 7 6 1.3201 -2.6842 -2.4986 8 8 1.7044 -2.1388 -3.5164 9 6 0.7235 -4.0224 -2.5641 10 6 0.2624 -4.7463 -1.5203 11 7 -0.2155 -5.9334 -2.0101 12 6 -0.8090 -7.0093 -1.2124 13 6 -0.0437 -5.9496 -3.3453 14 8 -0.3552 -6.8599 -4.0910 15 7 0.5313 -4.7892 -3.7175 16 6 0.8907 -4.4013 -5.0838 17 6 3.5638 -0.8461 -1.1727 18 6 3.9523 -1.6687 0.0581 19 6 3.4644 -0.9520 1.3210 20 7 2.0226 -0.6996 1.1945 21 6 1.1536 -1.1136 2.1685 22 1 0.1375 -1.3731 1.9109 23 6 1.5789 -1.1996 3.4871 24 7 2.5948 -0.4716 3.8997 25 14 0.7095 -2.3488 4.6758 26 1 0.8062 -3.7438 4.1758 27 1 -0.7196 -1.9598 4.7844 28 1 1.3510 -2.2566 6.0119 29 1 -0.3634 0.5083 0.8931 30 1 -0.3633 0.5194 -0.8868 31 1 -0.3633 -1.0277 -0.0064 32 1 1.1377 -2.4938 -0.4998 33 1 0.2674 -4.4422 -0.4840 34 1 -1.0937 -7.8327 -1.8675 35 1 -0.0825 -7.3620 -0.4803 36 1 -1.6923 -6.6338 -0.6958 37 1 1.9092 -4.7255 -5.2976 38 1 0.2043 -4.8721 -5.7876 39 1 0.8260 -3.3177 -5.1828 40 1 4.0057 0.1476 -1.0996 41 1 3.9313 -1.3416 -2.0714 42 1 5.0363 -1.7761 0.0965 43 1 3.4909 -2.6543 -0.0021 44 1 3.9929 -0.0050 1.4310 45 1 3.6504 -1.5799 2.1924 46 1 3.0085 0.1682 3.2994 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994482187.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:10 Heat of formation + Delta-G solvation = -11.792897 kcal Electronic energy + Delta-G solvation = -29044.985808 eV Core-core repulsion = 25163.965498 eV Total energy + Delta-G solvation = -3881.020310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.54000 -41.08960 -39.23414 -37.99109 -36.47081 -35.74688 -34.14239 -33.50319 -31.80862 -30.74399 -29.00200 -27.77113 -27.08087 -26.68079 -24.67116 -23.45679 -22.54008 -21.98151 -21.46095 -20.29683 -19.17480 -18.78940 -17.88795 -17.73968 -17.01209 -16.41878 -16.38894 -16.23973 -15.91379 -15.72110 -15.37221 -15.34645 -15.06767 -14.91345 -14.74498 -14.44215 -14.19515 -13.97852 -13.45241 -13.39090 -13.26044 -13.15971 -12.73393 -12.66274 -12.55903 -12.43894 -12.19936 -11.87796 -11.84128 -11.76694 -11.65231 -11.45573 -11.05214 -10.93294 -10.89286 -10.33203 -10.00244 -8.92435 -8.76932 -8.06844 -5.24853 0.30206 1.10563 1.63879 1.69869 1.75653 1.86887 1.92303 2.21863 2.61203 2.77079 3.38107 3.53886 3.58687 3.90029 3.97376 4.03332 4.06689 4.14073 4.17992 4.32852 4.33681 4.40686 4.52235 4.53933 4.63889 4.67564 4.70016 4.78732 4.90128 4.93023 4.94716 4.97831 5.10276 5.17275 5.24811 5.31304 5.37209 5.45337 5.46825 5.57597 5.65387 6.07151 6.08402 6.55324 6.60356 7.02628 7.17463 7.21011 7.93083 8.38836 9.19484 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013156 B = 0.004573 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.861259 B = 6121.861252 C = 7516.476848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.158 3.842 3 H 0.029 0.971 4 C 0.149 3.851 5 H 0.086 0.914 6 N -0.683 5.683 7 C 0.594 3.406 8 O -0.574 6.574 9 C -0.062 4.062 10 C 0.086 3.914 11 N -0.517 5.517 12 C 0.083 3.917 13 C 0.633 3.367 14 O -0.607 6.607 15 N -0.515 5.515 16 C 0.102 3.898 17 C -0.116 4.116 18 C -0.121 4.121 19 C 0.159 3.841 20 N -0.603 5.603 21 C -0.336 4.336 22 H 0.073 0.927 23 C -0.076 4.076 24 N -0.954 5.954 25 Si 1.107 2.893 26 H -0.270 1.270 27 H -0.280 1.280 28 H -0.309 1.309 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.412 0.588 33 H 0.224 0.776 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.059 0.941 44 H -0.002 1.002 45 H 0.046 0.954 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.689 -7.621 -9.766 13.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.051 3.949 3 H 0.047 0.953 4 C 0.042 3.958 5 H 0.104 0.896 6 N -0.333 5.333 7 C 0.382 3.618 8 O -0.455 6.455 9 C -0.170 4.170 10 C -0.044 4.044 11 N -0.232 5.232 12 C -0.057 4.057 13 C 0.335 3.665 14 O -0.489 6.489 15 N -0.234 5.234 16 C -0.039 4.039 17 C -0.155 4.155 18 C -0.160 4.160 19 C 0.033 3.967 20 N -0.328 5.328 21 C -0.465 4.465 22 H 0.091 0.909 23 C -0.273 4.273 24 N -0.596 5.596 25 Si 0.933 3.067 26 H -0.195 1.195 27 H -0.206 1.206 28 H -0.236 1.236 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.249 0.751 33 H 0.240 0.760 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.016 0.984 45 H 0.064 0.936 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.685 -8.502 -9.488 13.574 hybrid contribution 0.271 0.843 -0.986 1.326 sum -4.413 -7.659 -10.475 13.706 Atomic orbital electron populations 1.21683 0.94054 1.02000 1.00584 1.20750 0.94695 0.93280 0.86134 0.95292 1.21276 0.92739 0.82903 0.98853 0.89640 1.45588 1.61065 1.18365 1.08319 1.16767 0.78035 0.83154 0.83886 1.90756 1.52211 1.67543 1.35027 1.19673 1.14625 0.96426 0.86260 1.22648 0.97045 0.84614 1.00114 1.45176 1.53399 1.17681 1.06905 1.22240 1.00282 0.87826 0.95323 1.16347 0.83401 0.83494 0.83257 1.90978 1.62039 1.39175 1.56712 1.45280 1.54677 1.15067 1.08368 1.21886 1.01446 1.02879 0.77715 1.21735 0.95450 1.00594 0.97710 1.21857 0.99884 0.99189 0.95115 1.20780 0.84219 0.95692 0.96010 1.44405 1.02554 1.65807 1.20018 1.20187 0.96509 1.41488 0.88335 0.90929 1.26968 1.00583 1.01727 0.97981 1.70897 1.27966 1.23010 1.37747 0.82948 0.74568 0.75476 0.73680 1.19549 1.20563 1.23650 0.93846 0.91907 0.91981 0.75081 0.75992 0.89555 0.87986 0.87752 0.91045 0.89660 0.88595 0.91389 0.92183 0.91922 0.92220 0.98355 0.93568 0.93626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 7.72 71.98 0.56 -3.34 16 2 C 0.16 5.40 3.18 44.83 0.14 5.55 16 3 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 4 C 0.15 4.41 2.32 44.92 0.10 4.51 16 5 H 0.09 2.53 7.58 -2.39 -0.02 2.51 16 6 N -0.68 -18.44 3.43 -446.82 -1.53 -19.97 16 7 C 0.59 16.66 7.75 86.44 0.67 17.33 16 8 O -0.57 -18.88 14.49 -4.34 -0.06 -18.94 16 9 C -0.06 -1.57 6.88 39.35 0.27 -1.30 16 10 C 0.09 1.71 10.91 83.17 0.91 2.62 16 11 N -0.52 -11.04 3.12 -679.64 -2.12 -13.16 16 12 C 0.08 1.10 11.16 127.77 1.43 2.53 16 13 C 0.63 18.29 8.49 179.11 1.52 19.81 16 14 O -0.61 -21.28 17.35 -4.44 -0.08 -21.36 16 15 N -0.51 -14.10 3.21 -667.05 -2.14 -16.25 16 16 C 0.10 2.46 10.57 127.77 1.35 3.81 16 17 C -0.12 -3.48 5.58 30.62 0.17 -3.31 16 18 C -0.12 -3.95 5.93 30.67 0.18 -3.77 16 19 C 0.16 6.54 4.69 86.36 0.40 6.95 16 20 N -0.60 -24.69 2.50 -676.03 -1.69 -26.38 16 21 C -0.34 -15.25 8.48 84.03 0.71 -14.54 16 22 H 0.07 3.12 6.28 -2.91 -0.02 3.11 16 23 C -0.08 -3.80 4.69 84.86 0.40 -3.41 16 24 N -0.95 -53.55 12.52 21.65 0.27 -53.28 16 25 Si 1.11 44.84 29.98 68.60 2.06 46.89 16 26 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 27 H -0.28 -10.58 7.11 99.48 0.71 -9.88 16 28 H -0.31 -13.64 7.11 99.48 0.71 -12.93 16 29 H 0.04 1.52 7.62 -2.39 -0.02 1.50 16 30 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.82 6.37 -2.39 -0.02 1.80 16 32 H 0.41 10.83 6.59 -92.71 -0.61 10.22 16 33 H 0.22 3.02 7.37 -2.91 -0.02 3.00 16 34 H 0.09 1.32 7.68 -2.39 -0.02 1.30 16 35 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.10 0.91 8.14 -2.39 -0.02 0.90 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.08 1.91 8.08 -2.39 -0.02 1.89 16 39 H 0.10 2.39 6.45 -2.39 -0.02 2.37 16 40 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.06 1.92 7.53 -2.39 -0.02 1.90 16 44 H 0.00 -0.07 7.84 -2.39 -0.02 -0.09 16 45 H 0.05 2.20 6.42 -2.39 -0.02 2.19 16 46 H 0.25 14.60 6.63 -92.71 -0.62 13.99 16 Total: -1.00 -67.52 363.85 4.06 -63.46 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.54 Total: 25.55 kcal Atomic # 6 Polarization: 24.62 SS G_CDS: 8.82 Total: 33.43 kcal Atomic # 7 Polarization: -121.83 SS G_CDS: -7.22 Total: -129.04 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -0.14 Total: -40.30 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.06 Total: 46.89 kcal Total: -67.52 4.06 -63.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994482187.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.668 kcal (2) G-P(sol) polarization free energy of solvation -67.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds