Wall clock time and date at job start Fri Apr 10 2020 18:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00137 * 2 1 4 4 C 1.53003 * 109.47110 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47172 * 180.02562 * 4 3 2 6 6 N 1.39939 * 125.75198 * 89.97628 * 5 4 3 7 7 C 1.30453 * 108.89268 * 180.02562 * 6 5 4 8 8 C 1.41284 * 108.02936 * 359.97438 * 7 6 5 9 9 C 1.47428 * 126.42105 * 179.97438 * 8 7 6 10 10 O 1.21599 * 120.00311 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99300 * 0.02562 * 9 8 7 12 12 C 1.46497 * 119.99253 * 180.02562 * 11 9 8 13 13 H 1.09002 * 112.85277 * 313.57364 * 12 11 9 14 14 C 1.53781 * 113.61632 * 84.77728 * 12 11 9 15 15 C 1.53787 * 87.08246 * 89.19669 * 14 12 11 16 16 H 1.08994 * 113.61227 * 140.06741 * 15 14 12 17 17 N 1.46500 * 113.61068 * 270.88704 * 15 14 12 18 18 C 1.36936 * 119.99356 * 202.45662 * 17 15 14 19 19 H 1.08004 * 120.00479 * 359.97438 * 18 17 15 20 20 C 1.38818 * 119.99798 * 179.97438 * 18 17 15 21 21 N 1.31615 * 120.00045 * 179.97438 * 20 18 17 22 22 Si 1.86792 * 119.99874 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47347 * 89.99676 * 22 20 18 24 24 H 1.48501 * 109.47496 * 209.99680 * 22 20 18 25 25 H 1.48505 * 109.47304 * 330.00047 * 22 20 18 26 26 C 1.53782 * 87.07897 * 25.43376 * 15 14 12 27 27 C 1.34261 * 125.75496 * 270.30918 * 5 4 3 28 28 C 1.50699 * 126.29222 * 359.96438 * 27 5 4 29 29 H 1.08997 * 109.47728 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46650 * 299.99865 * 1 2 3 31 31 H 1.09005 * 109.47205 * 59.99452 * 1 2 3 32 32 H 1.09004 * 109.46733 * 60.00329 * 3 2 1 33 33 H 1.09000 * 109.47753 * 300.00482 * 3 2 1 34 34 H 1.09004 * 109.47120 * 60.00486 * 4 3 2 35 35 H 1.09000 * 109.47141 * 300.00776 * 4 3 2 36 36 H 1.08005 * 125.98432 * 180.02562 * 7 6 5 37 37 H 0.96992 * 120.00307 * 0.02562 * 11 9 8 38 38 H 1.08995 * 113.61162 * 334.64744 * 14 12 11 39 39 H 1.09006 * 113.69348 * 203.75458 * 14 12 11 40 40 H 0.96996 * 120.00059 * 22.72507 * 17 15 14 41 41 H 0.96998 * 120.00372 * 179.97438 * 21 20 18 42 42 H 1.08997 * 113.61172 * 89.11938 * 26 15 14 43 43 H 1.08995 * 113.61223 * 220.01770 * 26 15 14 44 44 H 1.09004 * 109.46914 * 270.20337 * 28 27 5 45 45 H 1.08999 * 109.47262 * 30.19887 * 28 27 5 46 46 H 1.08995 * 109.47524 * 150.20092 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1314 2.5229 0.0000 6 7 4.4640 3.2693 1.1360 7 6 4.9713 4.4102 0.7582 8 6 4.9833 4.4371 -0.6544 9 6 5.4721 5.5377 -1.5047 10 8 5.4267 5.4367 -2.7157 11 7 5.9693 6.6558 -0.9398 12 6 6.4545 7.7498 -1.7849 13 1 7.0972 7.4056 -2.5952 14 6 5.3461 8.7118 -2.2439 15 6 5.6192 9.5138 -0.9604 16 1 5.5861 10.5936 -1.1049 17 7 4.8273 9.0690 0.1891 18 6 4.6011 9.9223 1.2359 19 1 5.0068 10.9230 1.2143 20 6 3.8503 9.5011 2.3249 21 7 3.6333 10.3210 3.3313 22 14 3.1480 7.7706 2.3619 23 1 4.1271 6.8524 2.9972 24 1 1.8853 7.7654 3.1434 25 1 2.8734 7.3180 0.9744 26 6 7.0414 8.9295 -0.9918 27 6 4.4447 3.2426 -1.0892 28 6 4.2489 2.8220 -2.5230 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8465 -0.8899 34 1 3.8568 0.6439 -0.8909 35 1 3.8575 0.6434 0.8890 36 1 5.3217 5.1961 1.4109 37 1 6.0058 6.7362 0.0261 38 1 4.3564 8.2561 -2.2717 39 1 5.5880 9.2547 -3.1577 40 1 4.4666 8.1688 0.2103 41 1 3.1084 10.0269 4.0921 42 1 7.7481 9.5312 -1.5632 43 1 7.4202 8.6495 -0.0089 44 1 5.1393 2.2999 -2.8734 45 1 3.3874 2.1578 -2.5924 46 1 4.0783 3.7039 -3.1404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022075495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:29 Heat of formation + Delta-G solvation = 34.849897 kcal Electronic energy + Delta-G solvation = -27811.281619 eV Core-core repulsion = 23932.283892 eV Total energy + Delta-G solvation = -3878.997727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.62603 -39.70751 -38.41771 -37.70296 -34.40729 -33.70393 -32.57033 -32.20584 -30.52038 -29.42698 -27.51245 -26.67402 -25.24504 -24.65161 -23.79498 -22.98020 -21.83703 -20.33511 -19.72786 -18.89963 -17.73934 -17.49159 -16.90262 -16.60959 -16.07017 -15.72920 -15.51631 -15.10984 -14.80486 -14.70555 -14.41725 -14.14070 -13.76754 -13.70677 -13.37687 -13.19310 -13.07254 -12.72628 -12.40629 -12.35878 -12.10800 -12.01684 -11.99368 -11.77526 -11.71645 -11.02267 -10.92590 -10.87204 -10.42737 -10.25585 -10.21108 -9.79089 -9.61081 -9.58068 -9.54099 -9.00785 -8.82235 -8.49537 -7.34695 -5.83692 -3.19872 1.38453 1.96303 2.15341 3.26962 3.34212 3.36638 3.40437 3.48239 3.61095 4.16360 4.40238 4.45096 4.51031 4.64906 4.75712 4.82641 4.90282 4.92503 4.97521 5.09798 5.14361 5.18410 5.23273 5.27096 5.30860 5.35405 5.38685 5.45134 5.69123 5.74282 5.78716 5.92054 6.10588 6.20888 6.30874 6.33608 6.51700 6.53222 6.59199 6.69830 6.73858 6.99614 7.43154 7.83635 7.95128 8.36442 8.52037 9.14086 9.86176 10.06035 11.34344 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012092 B = 0.004050 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.962949 B = 6911.194804 C = 8567.430580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.044 3.956 4 C 0.134 3.866 5 N -0.363 5.363 6 N -0.292 5.292 7 C 0.087 3.913 8 C -0.292 4.292 9 C 0.597 3.403 10 O -0.552 6.552 11 N -0.704 5.704 12 C 0.129 3.871 13 H 0.083 0.917 14 C -0.168 4.168 15 C 0.170 3.830 16 H 0.072 0.928 17 N -0.730 5.730 18 C -0.247 4.247 19 H 0.094 0.906 20 C 0.008 3.992 21 N -0.930 5.930 22 Si 0.871 3.129 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.275 1.275 26 C -0.177 4.177 27 C 0.157 3.843 28 C -0.099 4.099 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.190 0.810 37 H 0.402 0.598 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.362 0.638 41 H 0.260 0.740 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.280 -19.080 -10.585 21.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.307 6.307 3 C -0.034 4.034 4 C 0.012 3.988 5 N -0.144 5.144 6 N -0.110 5.110 7 C -0.101 4.101 8 C -0.307 4.307 9 C 0.385 3.615 10 O -0.431 6.431 11 N -0.355 5.355 12 C 0.024 3.976 13 H 0.101 0.899 14 C -0.208 4.208 15 C 0.058 3.942 16 H 0.090 0.910 17 N -0.372 5.372 18 C -0.376 4.376 19 H 0.111 0.889 20 C -0.188 4.188 21 N -0.577 5.577 22 Si 0.700 3.300 23 H -0.205 1.205 24 H -0.216 1.216 25 H -0.202 1.202 26 C -0.218 4.218 27 C 0.026 3.974 28 C -0.157 4.157 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.206 0.794 37 H 0.238 0.762 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.196 0.804 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.106 0.894 45 H 0.087 0.913 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.071 -19.980 -10.228 22.445 hybrid contribution -0.655 -0.403 0.224 0.801 sum -0.726 -20.383 -10.003 22.717 Atomic orbital electron populations 1.22800 0.79900 1.03130 1.00528 1.87774 1.20606 1.26672 1.95606 1.22839 0.92994 0.85583 1.01995 1.21411 0.91826 0.79329 1.06191 1.48289 1.47853 1.14621 1.03683 1.77254 1.21169 1.05745 1.06873 1.24183 0.96281 0.95510 0.94137 1.20066 1.19022 0.98140 0.93466 1.17108 0.76599 0.80937 0.86835 1.90686 1.57146 1.81382 1.13931 1.45606 1.63413 1.16019 1.10426 1.21744 0.96423 0.85842 0.93602 0.89886 1.23855 0.99303 0.98498 0.99153 1.21129 0.89447 0.97021 0.86596 0.91021 1.42616 1.61622 1.14047 1.18886 1.19129 1.27679 0.96410 0.94417 0.88865 1.24652 1.00163 0.97305 0.96661 1.69680 1.44228 1.34988 1.08820 0.86780 0.79503 0.86162 0.77520 1.20484 1.21592 1.20155 1.24110 1.00727 0.96680 1.00330 1.21521 0.94163 0.90673 0.91039 1.20704 1.02505 1.04146 0.88360 0.89099 0.93652 0.93713 0.91894 0.92433 0.87666 0.87298 0.79352 0.76171 0.91441 0.89383 0.80431 0.92957 0.89436 0.90671 0.89439 0.91285 0.87276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.55 10.70 -35.23 -0.38 -3.93 16 3 C 0.04 0.41 6.26 37.16 0.23 0.64 16 4 C 0.13 1.23 6.40 -4.04 -0.03 1.21 16 5 N -0.36 -4.64 3.58 -56.60 -0.20 -4.84 16 6 N -0.29 -4.53 12.50 30.86 0.39 -4.15 16 7 C 0.09 1.37 11.50 -16.98 -0.20 1.18 16 8 C -0.29 -4.57 6.13 -105.07 -0.64 -5.21 16 9 C 0.60 10.04 7.81 -12.52 -0.10 9.94 16 10 O -0.55 -10.01 14.78 5.28 0.08 -9.93 16 11 N -0.70 -11.48 4.32 -54.09 -0.23 -11.71 16 12 C 0.13 2.00 3.99 -67.12 -0.27 1.74 16 13 H 0.08 1.23 8.05 -51.93 -0.42 0.81 16 14 C -0.17 -2.75 7.62 -25.92 -0.20 -2.94 16 15 C 0.17 3.14 4.56 -67.11 -0.31 2.84 16 16 H 0.07 1.34 8.11 -51.93 -0.42 0.92 16 17 N -0.73 -16.60 4.83 -52.63 -0.25 -16.85 16 18 C -0.25 -6.72 10.46 -15.06 -0.16 -6.88 16 19 H 0.09 2.72 8.06 -52.48 -0.42 2.29 16 20 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 21 N -0.93 -28.63 13.97 55.49 0.78 -27.86 16 22 Si 0.87 21.52 27.73 -169.99 -4.71 16.81 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 25 H -0.28 -6.60 6.52 56.52 0.37 -6.24 16 26 C -0.18 -2.73 7.58 -25.92 -0.20 -2.93 16 27 C 0.16 2.10 7.01 -81.60 -0.57 1.53 16 28 C -0.10 -1.01 9.34 36.01 0.34 -0.67 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.11 0.72 7.64 -51.93 -0.40 0.33 16 35 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.19 2.82 7.50 -52.48 -0.39 2.43 16 37 H 0.40 6.57 6.79 -40.82 -0.28 6.30 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.36 8.15 4.22 -40.82 -0.17 7.98 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 42 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 44 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 0.53 7.71 -51.93 -0.40 0.13 16 46 H 0.11 1.32 6.51 -51.93 -0.34 0.98 16 LS Contribution 380.77 15.07 5.74 5.74 Total: -1.00 -33.67 380.77 -6.94 -40.61 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -7.06 Total: 14.21 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -1.07 Total: 1.91 kcal Atomic # 7 Polarization: -65.88 SS G_CDS: 0.47 Total: -65.41 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.30 Total: -13.86 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.71 Total: 16.81 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.67 -6.94 -40.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022075495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.457 kcal (2) G-P(sol) polarization free energy of solvation -33.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds