Wall clock time and date at job start Fri Apr 10 2020 18:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00137 * 2 1 4 4 C 1.53003 * 109.47110 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47172 * 180.02562 * 4 3 2 6 6 N 1.39939 * 125.75198 * 89.97628 * 5 4 3 7 7 C 1.30453 * 108.89268 * 180.02562 * 6 5 4 8 8 C 1.41284 * 108.02936 * 359.97438 * 7 6 5 9 9 C 1.47428 * 126.42105 * 179.97438 * 8 7 6 10 10 O 1.21599 * 120.00311 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99300 * 0.02562 * 9 8 7 12 12 C 1.46497 * 119.99253 * 180.02562 * 11 9 8 13 13 H 1.09002 * 112.85277 * 313.57364 * 12 11 9 14 14 C 1.53781 * 113.61632 * 84.77728 * 12 11 9 15 15 C 1.53787 * 87.08246 * 89.19669 * 14 12 11 16 16 H 1.08994 * 113.61227 * 140.06741 * 15 14 12 17 17 N 1.46500 * 113.61068 * 270.88704 * 15 14 12 18 18 C 1.36936 * 119.99356 * 202.45662 * 17 15 14 19 19 H 1.08004 * 120.00479 * 359.97438 * 18 17 15 20 20 C 1.38818 * 119.99798 * 179.97438 * 18 17 15 21 21 N 1.31615 * 120.00045 * 179.97438 * 20 18 17 22 22 Si 1.86792 * 119.99874 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47347 * 89.99676 * 22 20 18 24 24 H 1.48501 * 109.47496 * 209.99680 * 22 20 18 25 25 H 1.48505 * 109.47304 * 330.00047 * 22 20 18 26 26 C 1.53782 * 87.07897 * 25.43376 * 15 14 12 27 27 C 1.34261 * 125.75496 * 270.30918 * 5 4 3 28 28 C 1.50699 * 126.29222 * 359.96438 * 27 5 4 29 29 H 1.08997 * 109.47728 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46650 * 299.99865 * 1 2 3 31 31 H 1.09005 * 109.47205 * 59.99452 * 1 2 3 32 32 H 1.09004 * 109.46733 * 60.00329 * 3 2 1 33 33 H 1.09000 * 109.47753 * 300.00482 * 3 2 1 34 34 H 1.09004 * 109.47120 * 60.00486 * 4 3 2 35 35 H 1.09000 * 109.47141 * 300.00776 * 4 3 2 36 36 H 1.08005 * 125.98432 * 180.02562 * 7 6 5 37 37 H 0.96992 * 120.00307 * 0.02562 * 11 9 8 38 38 H 1.08995 * 113.61162 * 334.64744 * 14 12 11 39 39 H 1.09006 * 113.69348 * 203.75458 * 14 12 11 40 40 H 0.96996 * 120.00059 * 22.72507 * 17 15 14 41 41 H 0.96998 * 120.00372 * 179.97438 * 21 20 18 42 42 H 1.08997 * 113.61172 * 89.11938 * 26 15 14 43 43 H 1.08995 * 113.61223 * 220.01770 * 26 15 14 44 44 H 1.09004 * 109.46914 * 270.20337 * 28 27 5 45 45 H 1.08999 * 109.47262 * 30.19887 * 28 27 5 46 46 H 1.08995 * 109.47524 * 150.20092 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1314 2.5229 0.0000 6 7 4.4640 3.2693 1.1360 7 6 4.9713 4.4102 0.7582 8 6 4.9833 4.4371 -0.6544 9 6 5.4721 5.5377 -1.5047 10 8 5.4267 5.4367 -2.7157 11 7 5.9693 6.6558 -0.9398 12 6 6.4545 7.7498 -1.7849 13 1 7.0972 7.4056 -2.5952 14 6 5.3461 8.7118 -2.2439 15 6 5.6192 9.5138 -0.9604 16 1 5.5861 10.5936 -1.1049 17 7 4.8273 9.0690 0.1891 18 6 4.6011 9.9223 1.2359 19 1 5.0068 10.9230 1.2143 20 6 3.8503 9.5011 2.3249 21 7 3.6333 10.3210 3.3313 22 14 3.1480 7.7706 2.3619 23 1 4.1271 6.8524 2.9972 24 1 1.8853 7.7654 3.1434 25 1 2.8734 7.3180 0.9744 26 6 7.0414 8.9295 -0.9918 27 6 4.4447 3.2426 -1.0892 28 6 4.2489 2.8220 -2.5230 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8465 -0.8899 34 1 3.8568 0.6439 -0.8909 35 1 3.8575 0.6434 0.8890 36 1 5.3217 5.1961 1.4109 37 1 6.0058 6.7362 0.0261 38 1 4.3564 8.2561 -2.2717 39 1 5.5880 9.2547 -3.1577 40 1 4.4666 8.1688 0.2103 41 1 3.1084 10.0269 4.0921 42 1 7.7481 9.5312 -1.5632 43 1 7.4202 8.6495 -0.0089 44 1 5.1393 2.2999 -2.8734 45 1 3.3874 2.1578 -2.5924 46 1 4.0783 3.7039 -3.1404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022075495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:28 Heat of formation + Delta-G solvation = 10.896535 kcal Electronic energy + Delta-G solvation = -27812.320314 eV Core-core repulsion = 23932.283892 eV Total energy + Delta-G solvation = -3880.036422 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.68408 -41.01416 -39.18699 -38.94877 -35.58946 -35.29252 -34.01771 -33.16714 -32.45699 -30.32188 -28.48493 -27.29288 -26.58809 -26.23246 -24.86657 -24.26394 -23.20240 -21.45030 -20.95943 -20.33583 -19.43884 -18.71429 -17.72082 -17.32184 -17.13246 -16.88016 -16.59506 -16.40742 -16.26443 -15.87989 -15.66447 -15.48712 -15.00618 -14.80275 -14.68849 -14.40860 -14.12512 -13.83363 -13.81892 -13.49794 -13.25875 -13.15090 -13.05165 -12.85758 -12.68558 -12.58179 -12.38545 -12.15375 -11.96734 -11.90133 -11.78672 -11.08939 -10.95264 -10.85552 -10.84666 -10.59478 -10.06216 -9.68193 -9.30484 -8.04433 -5.36657 0.35228 0.95258 1.08117 1.29833 1.34383 1.39662 2.25824 2.38630 2.42817 2.71448 3.26176 3.29939 3.49713 3.55037 3.70471 3.74135 3.77681 3.87034 3.92420 4.05390 4.10104 4.25344 4.33575 4.38248 4.40190 4.41908 4.52680 4.55936 4.61976 4.78350 4.83235 4.88995 4.93975 5.02670 5.05307 5.08942 5.21125 5.26614 5.35813 5.67065 5.73727 5.82735 5.94389 6.21737 6.34064 6.57692 7.06413 7.26041 7.84075 8.02037 9.17002 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012092 B = 0.004050 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.962949 B = 6911.194804 C = 8567.430580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.049 3.951 4 C 0.128 3.872 5 N -0.355 5.355 6 N -0.316 5.316 7 C 0.076 3.924 8 C -0.321 4.321 9 C 0.597 3.403 10 O -0.569 6.569 11 N -0.707 5.707 12 C 0.131 3.869 13 H 0.099 0.901 14 C -0.156 4.156 15 C 0.145 3.855 16 H 0.066 0.934 17 N -0.735 5.735 18 C -0.225 4.225 19 H 0.065 0.935 20 C -0.056 4.056 21 N -0.980 5.980 22 Si 0.932 3.068 23 H -0.259 1.259 24 H -0.303 1.303 25 H -0.266 1.266 26 C -0.157 4.157 27 C 0.168 3.832 28 C -0.095 4.095 29 H 0.108 0.892 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.136 0.864 35 H 0.113 0.887 36 H 0.188 0.812 37 H 0.401 0.599 38 H 0.045 0.955 39 H 0.119 0.881 40 H 0.364 0.636 41 H 0.257 0.743 42 H 0.122 0.878 43 H 0.064 0.936 44 H 0.106 0.894 45 H 0.098 0.902 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.675 -21.555 -12.737 25.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C -0.029 4.029 4 C 0.008 3.992 5 N -0.136 5.136 6 N -0.134 5.134 7 C -0.111 4.111 8 C -0.336 4.336 9 C 0.386 3.614 10 O -0.450 6.450 11 N -0.358 5.358 12 C 0.026 3.974 13 H 0.117 0.883 14 C -0.196 4.196 15 C 0.036 3.964 16 H 0.085 0.915 17 N -0.377 5.377 18 C -0.356 4.356 19 H 0.083 0.917 20 C -0.247 4.247 21 N -0.630 5.630 22 Si 0.760 3.240 23 H -0.184 1.184 24 H -0.230 1.230 25 H -0.191 1.191 26 C -0.198 4.198 27 C 0.035 3.965 28 C -0.153 4.153 29 H 0.126 0.874 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.154 0.846 35 H 0.131 0.869 36 H 0.205 0.795 37 H 0.236 0.764 38 H 0.064 0.936 39 H 0.137 0.863 40 H 0.198 0.802 41 H 0.066 0.934 42 H 0.140 0.860 43 H 0.083 0.917 44 H 0.124 0.876 45 H 0.117 0.883 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.357 -22.480 -12.425 25.688 hybrid contribution -0.779 0.383 0.802 1.182 sum -0.422 -22.098 -11.623 24.972 Atomic orbital electron populations 1.22994 0.78724 1.04452 1.00859 1.87756 1.21901 1.26341 1.95639 1.22717 0.92994 0.85737 1.01422 1.21735 0.91735 0.77755 1.07945 1.48509 1.47006 1.15258 1.02835 1.77183 1.21780 1.06029 1.08447 1.24231 0.96683 0.95802 0.94430 1.20127 1.21006 0.99075 0.93369 1.17275 0.76249 0.81159 0.86763 1.90666 1.58049 1.81785 1.14516 1.45685 1.63420 1.16235 1.10430 1.21812 0.96105 0.85663 0.93800 0.88306 1.23826 0.98516 0.98200 0.99010 1.21478 0.91260 0.97257 0.86403 0.91537 1.42585 1.62564 1.13494 1.19060 1.19104 1.25606 0.95713 0.95193 0.91683 1.25318 1.01591 1.01160 0.96661 1.69845 1.46156 1.37190 1.09836 0.85773 0.78415 0.82000 0.77764 1.18445 1.23001 1.19129 1.23966 0.98930 0.96417 1.00447 1.21972 0.92351 0.89853 0.92363 1.20795 1.04644 1.04095 0.85798 0.87362 0.93845 0.92883 0.93700 0.91847 0.84606 0.86923 0.79474 0.76370 0.93640 0.86280 0.80207 0.93411 0.86030 0.91722 0.87611 0.88297 0.88992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.40 -6.37 10.70 -148.98 -1.59 -7.96 16 3 C 0.05 0.81 6.26 71.98 0.45 1.26 16 4 C 0.13 2.03 6.40 86.38 0.55 2.58 16 5 N -0.36 -8.36 3.58 -332.99 -1.19 -9.55 16 6 N -0.32 -9.46 12.50 -56.27 -0.70 -10.17 16 7 C 0.08 2.35 11.50 85.65 0.99 3.34 16 8 C -0.32 -9.66 6.13 -20.15 -0.12 -9.78 16 9 C 0.60 19.30 7.81 86.66 0.68 19.97 16 10 O -0.57 -19.74 14.78 -4.03 -0.06 -19.80 16 11 N -0.71 -22.15 4.32 -443.29 -1.92 -24.06 16 12 C 0.13 3.77 3.99 45.52 0.18 3.95 16 13 H 0.10 2.60 8.05 -2.39 -0.02 2.58 16 14 C -0.16 -4.76 7.62 31.12 0.24 -4.52 16 15 C 0.15 5.21 4.56 45.52 0.21 5.42 16 16 H 0.07 2.44 8.11 -2.39 -0.02 2.42 16 17 N -0.73 -33.18 4.83 -320.43 -1.55 -34.72 16 18 C -0.23 -12.47 10.46 84.04 0.88 -11.59 16 19 H 0.07 3.91 8.06 -2.91 -0.02 3.89 16 20 C -0.06 -3.23 5.50 84.86 0.47 -2.77 16 21 N -0.98 -62.15 13.97 21.65 0.30 -61.85 16 22 Si 0.93 45.31 27.73 68.60 1.90 47.22 16 23 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 24 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 25 H -0.27 -12.31 6.52 99.48 0.65 -11.66 16 26 C -0.16 -4.48 7.58 31.12 0.24 -4.24 16 27 C 0.17 4.11 7.01 42.14 0.30 4.41 16 28 C -0.10 -1.66 9.34 71.24 0.67 -0.99 16 29 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.14 1.34 7.64 -2.38 -0.02 1.32 16 35 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.19 5.55 7.50 -2.91 -0.02 5.53 16 37 H 0.40 12.76 6.79 -92.71 -0.63 12.13 16 38 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.12 2.89 8.14 -2.38 -0.02 2.87 16 40 H 0.36 16.15 4.22 -92.71 -0.39 15.76 16 41 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 42 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 43 H 0.06 2.02 8.13 -2.39 -0.02 2.00 16 44 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.10 1.12 7.71 -2.39 -0.02 1.10 16 46 H 0.09 2.02 6.51 -2.39 -0.02 2.00 16 Total: -1.00 -74.08 380.77 2.07 -72.01 By element: Atomic # 1 Polarization: 40.40 SS G_CDS: -0.08 Total: 40.32 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 6.96 Total: 8.57 kcal Atomic # 7 Polarization: -135.30 SS G_CDS: -5.06 Total: -140.35 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -1.65 Total: -27.76 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.90 Total: 47.22 kcal Total: -74.08 2.07 -72.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022075495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.905 kcal (2) G-P(sol) polarization free energy of solvation -74.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds