Wall clock time and date at job start Fri Apr 10 2020 18:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42889 * 114.00724 * 2 1 4 4 C 1.52999 * 109.47627 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47453 * 179.97438 * 4 3 2 6 6 C 1.34261 * 125.75134 * 124.99406 * 5 4 3 7 7 C 1.38047 * 107.41522 * 180.02562 * 6 5 4 8 8 C 1.47433 * 126.41446 * 179.97438 * 7 6 5 9 9 O 1.21598 * 119.99969 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99707 * 0.03272 * 8 7 6 11 11 C 1.46503 * 120.00108 * 180.02562 * 10 8 7 12 12 H 1.09008 * 112.90452 * 313.65113 * 11 10 8 13 13 C 1.53780 * 113.61567 * 84.89756 * 11 10 8 14 14 C 1.53776 * 87.16858 * 89.16544 * 13 11 10 15 15 H 1.09006 * 113.61490 * 139.94283 * 14 13 11 16 16 N 1.46502 * 113.61316 * 270.75293 * 14 13 11 17 17 C 1.36938 * 120.00080 * 202.50363 * 16 14 13 18 18 H 1.07995 * 120.00380 * 0.02562 * 17 16 14 19 19 C 1.38810 * 119.99947 * 180.02562 * 17 16 14 20 20 N 1.31619 * 120.00591 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 120.00016 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47120 * 89.99785 * 21 19 17 23 23 H 1.48498 * 109.47011 * 209.99869 * 21 19 17 24 24 H 1.48496 * 109.46909 * 329.99532 * 21 19 17 25 25 C 1.53778 * 87.08553 * 25.38959 * 14 13 11 26 26 C 1.41289 * 107.17071 * 0.23222 * 7 6 5 27 27 C 1.50702 * 125.98912 * 179.73486 * 26 7 6 28 28 N 1.30447 * 108.01985 * 359.61450 * 26 7 6 29 29 H 1.09002 * 109.46920 * 59.99321 * 1 2 3 30 30 H 1.08996 * 109.47819 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46764 * 300.00540 * 1 2 3 32 32 H 1.08997 * 109.47451 * 59.99877 * 3 2 1 33 33 H 1.09005 * 109.47240 * 299.99886 * 3 2 1 34 34 H 1.08999 * 109.47329 * 59.99766 * 4 3 2 35 35 H 1.09002 * 109.46999 * 299.99914 * 4 3 2 36 36 H 1.08002 * 126.29282 * 0.02562 * 6 5 4 37 37 H 0.97004 * 120.00604 * 359.97438 * 10 8 7 38 38 H 1.08996 * 113.61585 * 334.57465 * 13 11 10 39 39 H 1.09007 * 113.61377 * 203.75056 * 13 11 10 40 40 H 0.97003 * 120.00100 * 22.51184 * 16 14 13 41 41 H 0.96996 * 120.00805 * 180.02562 * 20 19 17 42 42 H 1.09001 * 113.61470 * 89.11815 * 25 14 13 43 43 H 1.09004 * 113.61620 * 219.93684 * 25 14 13 44 44 H 1.08999 * 109.46968 * 89.99869 * 27 26 7 45 45 H 1.08998 * 109.47168 * 210.00286 * 27 26 7 46 46 H 1.08999 * 109.46872 * 330.00243 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3053 0.0000 4 6 3.5356 1.1844 -0.0006 5 7 4.1316 2.5227 -0.0013 6 6 5.0219 2.9853 0.8908 7 6 5.3269 4.2838 0.5349 8 6 6.2622 5.1855 1.2318 9 8 6.4439 6.3133 0.8149 10 7 6.9160 4.7598 2.3308 11 6 7.8451 5.6560 3.0236 12 1 8.5234 6.1718 2.3439 13 6 7.1610 6.5891 4.0366 14 6 7.3694 5.4812 5.0825 15 1 7.6643 5.8559 6.0627 16 7 6.2644 4.5217 5.1492 17 6 6.0669 3.7827 6.2850 18 1 6.7255 3.9074 7.1318 19 6 5.0201 2.8732 6.3480 20 7 4.8299 2.1631 7.4398 21 14 3.8813 2.6568 4.8831 22 1 4.4187 1.5989 3.9904 23 1 2.5310 2.2636 5.3597 24 1 3.7889 3.9362 4.1348 25 6 8.5525 5.0025 4.2246 26 6 4.5703 4.5887 -0.6187 27 6 4.5756 5.9009 -1.3599 28 7 3.8683 3.5346 -0.9312 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 1.6888 1.8463 0.8899 33 1 1.6888 1.8463 -0.8900 34 1 3.8568 0.6436 -0.8908 35 1 3.8575 0.6433 0.8891 36 1 5.4254 2.4415 1.7323 37 1 6.7709 3.8603 2.6635 38 1 6.1127 6.7850 3.8111 39 1 7.7263 7.4976 4.2444 40 1 5.6726 4.4098 4.3888 41 1 4.0987 1.5273 7.4837 42 1 9.4993 5.4767 4.4830 43 1 8.6284 3.9175 4.1520 44 1 5.3449 5.8790 -2.1317 45 1 3.6015 6.0609 -1.8222 46 1 4.7841 6.7116 -0.6618 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022075972.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:33 Heat of formation + Delta-G solvation = 34.760697 kcal Electronic energy + Delta-G solvation = -27937.385234 eV Core-core repulsion = 24058.383639 eV Total energy + Delta-G solvation = -3879.001595 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.55666 -39.71186 -38.32302 -37.70636 -34.47475 -33.78468 -32.82177 -31.12947 -30.58859 -29.82822 -27.93497 -26.36728 -25.26934 -24.68851 -23.65360 -22.75754 -21.86066 -20.28719 -19.72678 -18.97914 -17.70712 -17.63123 -16.88538 -16.58741 -15.96777 -15.69575 -15.42468 -15.17584 -14.89243 -14.72385 -14.25976 -14.09988 -13.92652 -13.67576 -13.46416 -12.97297 -12.88813 -12.80580 -12.23346 -12.16788 -12.08912 -12.02924 -11.89660 -11.73797 -11.65998 -11.11811 -10.96992 -10.89123 -10.47660 -10.33818 -10.08657 -9.83380 -9.66098 -9.55394 -9.45867 -9.07601 -8.84877 -8.53968 -7.40927 -5.90278 -3.26088 1.40200 2.01177 2.14323 3.10020 3.23776 3.27710 3.40021 3.44434 3.60890 4.22153 4.41818 4.52132 4.55505 4.61462 4.88231 4.91820 4.96347 5.02466 5.06489 5.09630 5.23218 5.29901 5.30423 5.32946 5.34125 5.37968 5.42218 5.67928 5.68331 5.74767 5.87572 5.96684 6.08477 6.17218 6.30309 6.48616 6.49439 6.55948 6.57784 6.70339 6.71930 6.96946 7.46632 7.81063 7.89257 8.30120 8.50966 9.07568 9.79473 9.99800 11.28008 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009347 B = 0.005216 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.009994 B = 5367.255466 C = 7915.833952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.050 3.950 4 C 0.132 3.868 5 N -0.358 5.358 6 C 0.106 3.894 7 C -0.286 4.286 8 C 0.596 3.404 9 O -0.544 6.544 10 N -0.707 5.707 11 C 0.128 3.872 12 H 0.084 0.916 13 C -0.168 4.168 14 C 0.169 3.831 15 H 0.072 0.928 16 N -0.731 5.731 17 C -0.244 4.244 18 H 0.094 0.906 19 C 0.008 3.992 20 N -0.929 5.929 21 Si 0.868 3.132 22 H -0.283 1.283 23 H -0.288 1.288 24 H -0.274 1.274 25 C -0.176 4.176 26 C 0.135 3.865 27 C -0.075 4.075 28 N -0.302 5.302 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.182 0.818 37 H 0.400 0.600 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.361 0.639 41 H 0.260 0.740 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 0.051 -16.674 16.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.027 4.027 4 C 0.011 3.989 5 N -0.136 5.136 6 C -0.045 4.045 7 C -0.300 4.300 8 C 0.384 3.616 9 O -0.423 6.423 10 N -0.358 5.358 11 C 0.023 3.977 12 H 0.102 0.898 13 C -0.208 4.208 14 C 0.058 3.942 15 H 0.090 0.910 16 N -0.372 5.372 17 C -0.374 4.374 18 H 0.112 0.888 19 C -0.188 4.188 20 N -0.576 5.576 21 Si 0.698 3.302 22 H -0.210 1.210 23 H -0.215 1.215 24 H -0.200 1.200 25 C -0.218 4.218 26 C -0.033 4.033 27 C -0.133 4.133 28 N -0.124 5.124 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.128 0.872 36 H 0.199 0.801 37 H 0.235 0.765 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.195 0.805 41 H 0.071 0.929 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.286 -0.101 -17.520 17.669 hybrid contribution -0.703 -0.436 -0.054 0.828 sum -2.989 -0.537 -17.575 17.835 Atomic orbital electron populations 1.22791 0.79919 1.03138 1.00424 1.87773 1.20620 1.26767 1.95612 1.22650 0.92404 0.85489 1.02207 1.21539 0.92942 0.78621 1.05833 1.48154 1.32788 1.11980 1.20724 1.23253 0.91949 0.94868 0.94474 1.20305 1.10699 0.95277 1.03756 1.17162 0.79042 0.86006 0.79428 1.90700 1.65188 1.19616 1.66748 1.45691 1.44812 1.17350 1.27978 1.21787 0.91237 0.92083 0.92565 0.89781 1.23850 1.01417 0.98037 0.97489 1.21132 0.87938 0.89087 0.96065 0.91004 1.42618 1.32197 1.46039 1.16341 1.19154 1.11410 1.13970 0.92891 0.88774 1.24644 0.98444 0.99025 0.96684 1.69668 1.33125 1.28294 1.26548 0.86787 0.81908 0.77667 0.83838 1.21018 1.21450 1.20000 1.24128 0.99727 1.01437 0.96464 1.22467 0.92208 0.95282 0.93364 1.20332 1.02430 0.90658 0.99927 1.77117 1.25120 0.96485 1.13681 0.93748 0.89105 0.93682 0.92473 0.91366 0.88132 0.87188 0.80074 0.76484 0.91393 0.89336 0.80511 0.92929 0.89417 0.90749 0.90252 0.91201 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.35 10.70 -35.23 -0.38 -4.73 16 3 C 0.05 0.56 6.11 37.16 0.23 0.78 16 4 C 0.13 1.43 6.86 -4.04 -0.03 1.40 16 5 N -0.36 -4.82 3.65 -60.81 -0.22 -5.05 16 6 C 0.11 1.50 10.95 -16.56 -0.18 1.32 16 7 C -0.29 -4.48 6.13 -105.06 -0.64 -5.12 16 8 C 0.60 10.05 7.81 -12.52 -0.10 9.95 16 9 O -0.54 -10.11 14.86 5.28 0.08 -10.03 16 10 N -0.71 -11.29 4.33 -54.00 -0.23 -11.52 16 11 C 0.13 1.97 4.00 -67.03 -0.27 1.70 16 12 H 0.08 1.24 8.05 -51.92 -0.42 0.82 16 13 C -0.17 -2.72 7.61 -25.92 -0.20 -2.92 16 14 C 0.17 3.08 4.55 -67.12 -0.31 2.78 16 15 H 0.07 1.33 8.11 -51.93 -0.42 0.90 16 16 N -0.73 -16.25 4.84 -52.64 -0.25 -16.50 16 17 C -0.24 -6.52 10.46 -15.06 -0.16 -6.68 16 18 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 19 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 20 N -0.93 -28.00 13.97 55.49 0.78 -27.23 16 21 Si 0.87 20.54 27.74 -169.99 -4.71 15.83 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.27 -6.33 6.52 56.52 0.37 -5.97 16 25 C -0.18 -2.66 7.58 -25.83 -0.20 -2.86 16 26 C 0.13 2.01 7.26 -82.02 -0.60 1.42 16 27 C -0.07 -0.93 9.92 36.01 0.36 -0.57 16 28 N -0.30 -4.43 12.33 33.90 0.42 -4.01 16 29 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.11 1.08 8.06 -51.93 -0.42 0.66 16 36 H 0.18 2.29 7.46 -52.49 -0.39 1.90 16 37 H 0.40 6.25 6.77 -40.82 -0.28 5.98 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.36 7.93 4.25 -40.82 -0.17 7.76 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.10 1.33 6.56 -51.93 -0.34 0.99 16 LS Contribution 382.23 15.07 5.76 5.76 Total: -1.00 -32.80 382.23 -6.94 -39.75 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -7.10 Total: 15.02 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -1.07 Total: 2.72 kcal Atomic # 7 Polarization: -64.79 SS G_CDS: 0.48 Total: -64.31 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.30 Total: -14.76 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.71 Total: 15.83 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.80 -6.94 -39.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022075972.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.507 kcal (2) G-P(sol) polarization free energy of solvation -32.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds