Wall clock time and date at job start Fri Apr 10 2020 18:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42889 * 114.00724 * 2 1 4 4 C 1.52999 * 109.47627 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47453 * 179.97438 * 4 3 2 6 6 C 1.34261 * 125.75134 * 124.99406 * 5 4 3 7 7 C 1.38047 * 107.41522 * 180.02562 * 6 5 4 8 8 C 1.47433 * 126.41446 * 179.97438 * 7 6 5 9 9 O 1.21598 * 119.99969 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99707 * 0.03272 * 8 7 6 11 11 C 1.46503 * 120.00108 * 180.02562 * 10 8 7 12 12 H 1.09008 * 112.90452 * 313.65113 * 11 10 8 13 13 C 1.53780 * 113.61567 * 84.89756 * 11 10 8 14 14 C 1.53776 * 87.16858 * 89.16544 * 13 11 10 15 15 H 1.09006 * 113.61490 * 139.94283 * 14 13 11 16 16 N 1.46502 * 113.61316 * 270.75293 * 14 13 11 17 17 C 1.36938 * 120.00080 * 202.50363 * 16 14 13 18 18 H 1.07995 * 120.00380 * 0.02562 * 17 16 14 19 19 C 1.38810 * 119.99947 * 180.02562 * 17 16 14 20 20 N 1.31619 * 120.00591 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 120.00016 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47120 * 89.99785 * 21 19 17 23 23 H 1.48498 * 109.47011 * 209.99869 * 21 19 17 24 24 H 1.48496 * 109.46909 * 329.99532 * 21 19 17 25 25 C 1.53778 * 87.08553 * 25.38959 * 14 13 11 26 26 C 1.41289 * 107.17071 * 0.23222 * 7 6 5 27 27 C 1.50702 * 125.98912 * 179.73486 * 26 7 6 28 28 N 1.30447 * 108.01985 * 359.61450 * 26 7 6 29 29 H 1.09002 * 109.46920 * 59.99321 * 1 2 3 30 30 H 1.08996 * 109.47819 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46764 * 300.00540 * 1 2 3 32 32 H 1.08997 * 109.47451 * 59.99877 * 3 2 1 33 33 H 1.09005 * 109.47240 * 299.99886 * 3 2 1 34 34 H 1.08999 * 109.47329 * 59.99766 * 4 3 2 35 35 H 1.09002 * 109.46999 * 299.99914 * 4 3 2 36 36 H 1.08002 * 126.29282 * 0.02562 * 6 5 4 37 37 H 0.97004 * 120.00604 * 359.97438 * 10 8 7 38 38 H 1.08996 * 113.61585 * 334.57465 * 13 11 10 39 39 H 1.09007 * 113.61377 * 203.75056 * 13 11 10 40 40 H 0.97003 * 120.00100 * 22.51184 * 16 14 13 41 41 H 0.96996 * 120.00805 * 180.02562 * 20 19 17 42 42 H 1.09001 * 113.61470 * 89.11815 * 25 14 13 43 43 H 1.09004 * 113.61620 * 219.93684 * 25 14 13 44 44 H 1.08999 * 109.46968 * 89.99869 * 27 26 7 45 45 H 1.08998 * 109.47168 * 210.00286 * 27 26 7 46 46 H 1.08999 * 109.46872 * 330.00243 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3053 0.0000 4 6 3.5356 1.1844 -0.0006 5 7 4.1316 2.5227 -0.0013 6 6 5.0219 2.9853 0.8908 7 6 5.3269 4.2838 0.5349 8 6 6.2622 5.1855 1.2318 9 8 6.4439 6.3133 0.8149 10 7 6.9160 4.7598 2.3308 11 6 7.8451 5.6560 3.0236 12 1 8.5234 6.1718 2.3439 13 6 7.1610 6.5891 4.0366 14 6 7.3694 5.4812 5.0825 15 1 7.6643 5.8559 6.0627 16 7 6.2644 4.5217 5.1492 17 6 6.0669 3.7827 6.2850 18 1 6.7255 3.9074 7.1318 19 6 5.0201 2.8732 6.3480 20 7 4.8299 2.1631 7.4398 21 14 3.8813 2.6568 4.8831 22 1 4.4187 1.5989 3.9904 23 1 2.5310 2.2636 5.3597 24 1 3.7889 3.9362 4.1348 25 6 8.5525 5.0025 4.2246 26 6 4.5703 4.5887 -0.6187 27 6 4.5756 5.9009 -1.3599 28 7 3.8683 3.5346 -0.9312 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 1.6888 1.8463 0.8899 33 1 1.6888 1.8463 -0.8900 34 1 3.8568 0.6436 -0.8908 35 1 3.8575 0.6433 0.8891 36 1 5.4254 2.4415 1.7323 37 1 6.7709 3.8603 2.6635 38 1 6.1127 6.7850 3.8111 39 1 7.7263 7.4976 4.2444 40 1 5.6726 4.4098 4.3888 41 1 4.0987 1.5273 7.4837 42 1 9.4993 5.4767 4.4830 43 1 8.6284 3.9175 4.1520 44 1 5.3449 5.8790 -2.1317 45 1 3.6015 6.0609 -1.8222 46 1 4.7841 6.7116 -0.6618 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022075972.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:32 Heat of formation + Delta-G solvation = 11.905311 kcal Electronic energy + Delta-G solvation = -27938.376318 eV Core-core repulsion = 24058.383639 eV Total energy + Delta-G solvation = -3879.992678 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.63319 -41.00990 -39.22091 -38.95360 -35.62367 -35.36860 -34.27757 -32.60550 -31.96925 -30.95456 -28.83678 -27.18198 -26.58326 -26.24185 -24.92432 -23.96732 -23.10514 -21.49458 -20.98172 -20.37009 -19.44022 -18.77503 -17.86743 -17.44478 -17.15417 -16.72168 -16.60669 -16.45130 -16.26921 -15.95484 -15.65433 -15.36848 -15.07234 -14.84076 -14.68951 -14.57312 -13.97124 -13.83052 -13.79763 -13.49836 -13.16773 -13.03616 -13.00073 -12.84472 -12.70901 -12.58593 -12.41279 -12.15269 -11.97596 -11.91294 -11.79185 -11.10375 -10.95134 -10.87818 -10.83695 -10.51661 -10.07821 -9.72419 -9.31024 -8.03574 -5.36773 0.30731 0.99430 1.07603 1.22167 1.35069 1.39691 2.22165 2.37748 2.43110 2.60891 3.26064 3.28321 3.50623 3.54700 3.69258 3.72247 3.72742 3.87183 4.00819 4.07721 4.19678 4.26731 4.32300 4.37131 4.38029 4.38350 4.50412 4.51888 4.75389 4.75972 4.85592 4.92435 4.93149 4.96510 5.02803 5.07529 5.25826 5.34113 5.45556 5.59512 5.68524 5.82624 5.92621 6.21873 6.37330 6.58333 7.06146 7.25537 7.83121 8.02106 9.17825 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.009347 B = 0.005216 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.009994 B = 5367.255466 C = 7915.833952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.403 6.403 3 C 0.055 3.945 4 C 0.126 3.874 5 N -0.353 5.353 6 C 0.108 3.892 7 C -0.309 4.309 8 C 0.595 3.405 9 O -0.567 6.567 10 N -0.707 5.707 11 C 0.130 3.870 12 H 0.098 0.902 13 C -0.158 4.158 14 C 0.146 3.854 15 H 0.065 0.935 16 N -0.734 5.734 17 C -0.228 4.228 18 H 0.063 0.937 19 C -0.058 4.058 20 N -0.980 5.980 21 Si 0.930 3.070 22 H -0.247 1.247 23 H -0.303 1.303 24 H -0.267 1.267 25 C -0.155 4.155 26 C 0.124 3.876 27 C -0.071 4.071 28 N -0.312 5.312 29 H 0.054 0.946 30 H 0.107 0.893 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.198 0.802 37 H 0.401 0.599 38 H 0.044 0.956 39 H 0.117 0.883 40 H 0.364 0.636 41 H 0.257 0.743 42 H 0.120 0.880 43 H 0.067 0.933 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.221 -0.068 -18.793 18.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.321 6.321 3 C -0.023 4.023 4 C 0.005 3.995 5 N -0.132 5.132 6 C -0.044 4.044 7 C -0.324 4.324 8 C 0.384 3.616 9 O -0.447 6.447 10 N -0.358 5.358 11 C 0.025 3.975 12 H 0.116 0.884 13 C -0.197 4.197 14 C 0.037 3.963 15 H 0.083 0.917 16 N -0.376 5.376 17 C -0.359 4.359 18 H 0.081 0.919 19 C -0.250 4.250 20 N -0.630 5.630 21 Si 0.758 3.242 22 H -0.172 1.172 23 H -0.231 1.231 24 H -0.193 1.193 25 C -0.195 4.195 26 C -0.044 4.044 27 C -0.129 4.129 28 N -0.133 5.133 29 H 0.073 0.927 30 H 0.126 0.874 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.215 0.785 37 H 0.237 0.763 38 H 0.063 0.937 39 H 0.136 0.864 40 H 0.198 0.802 41 H 0.066 0.934 42 H 0.138 0.862 43 H 0.085 0.915 44 H 0.109 0.891 45 H 0.104 0.896 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.881 -0.202 -19.683 19.774 hybrid contribution -0.784 -0.352 0.670 1.090 sum -2.666 -0.554 -19.013 19.207 Atomic orbital electron populations 1.22997 0.78623 1.04461 1.00910 1.87751 1.22094 1.26636 1.95662 1.22553 0.92621 0.85536 1.01575 1.21803 0.92725 0.77536 1.07390 1.48380 1.32279 1.12479 1.20043 1.23486 0.91689 0.94522 0.94710 1.20344 1.11492 0.95970 1.04577 1.17339 0.79007 0.85873 0.79414 1.90681 1.66045 1.20562 1.67418 1.45721 1.44775 1.17476 1.27788 1.21850 0.91109 0.91778 0.92724 0.88400 1.23832 1.00651 0.98653 0.96602 1.21458 0.88307 0.89614 0.96946 0.91677 1.42561 1.33651 1.46441 1.14976 1.19103 1.10070 1.13474 0.93224 0.91906 1.25378 1.00554 0.99366 0.99673 1.69857 1.34205 1.29773 1.29213 0.85786 0.78777 0.78801 0.80872 1.17160 1.23054 1.19265 1.23977 0.99597 1.01258 0.94710 1.22828 0.92024 0.96066 0.93454 1.20341 1.03742 0.89178 0.99688 1.77091 1.25277 0.96747 1.14232 0.92689 0.87447 0.93788 0.93643 0.91485 0.86410 0.85862 0.78494 0.76312 0.93688 0.86449 0.80196 0.93398 0.86160 0.91458 0.89101 0.89620 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.63 16 2 O -0.40 -8.20 10.70 -148.98 -1.59 -9.80 16 3 C 0.05 1.11 6.11 71.98 0.44 1.55 16 4 C 0.13 2.40 6.86 86.38 0.59 2.99 16 5 N -0.35 -8.73 3.65 -346.30 -1.26 -9.99 16 6 C 0.11 2.82 10.95 84.28 0.92 3.74 16 7 C -0.31 -9.19 6.13 -20.15 -0.12 -9.31 16 8 C 0.60 19.17 7.81 86.67 0.68 19.84 16 9 O -0.57 -20.39 14.86 -4.02 -0.06 -20.45 16 10 N -0.71 -21.16 4.33 -443.02 -1.92 -23.07 16 11 C 0.13 3.66 4.00 45.57 0.18 3.84 16 12 H 0.10 2.56 8.05 -2.38 -0.02 2.54 16 13 C -0.16 -4.77 7.61 31.12 0.24 -4.53 16 14 C 0.15 5.12 4.55 45.51 0.21 5.32 16 15 H 0.07 2.35 8.11 -2.38 -0.02 2.33 16 16 N -0.73 -32.04 4.84 -320.45 -1.55 -33.59 16 17 C -0.23 -12.27 10.46 84.03 0.88 -11.40 16 18 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 19 C -0.06 -3.26 5.50 84.86 0.47 -2.80 16 20 N -0.98 -60.47 13.97 21.65 0.30 -60.16 16 21 Si 0.93 42.13 27.74 68.60 1.90 44.03 16 22 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 23 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 24 H -0.27 -11.64 6.52 99.48 0.65 -10.99 16 25 C -0.15 -4.26 7.58 31.18 0.24 -4.02 16 26 C 0.12 3.52 7.26 43.52 0.32 3.84 16 27 C -0.07 -1.68 9.92 71.24 0.71 -0.97 16 28 N -0.31 -8.57 12.33 -46.68 -0.58 -9.14 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.12 2.04 8.06 -2.39 -0.02 2.02 16 36 H 0.20 4.37 7.46 -2.91 -0.02 4.34 16 37 H 0.40 11.68 6.77 -92.71 -0.63 11.05 16 38 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.12 2.86 8.14 -2.38 -0.02 2.84 16 40 H 0.36 15.45 4.25 -92.71 -0.39 15.06 16 41 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 42 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 43 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.08 2.21 6.56 -2.39 -0.02 2.19 16 Total: -1.00 -71.46 382.23 2.15 -69.31 By element: Atomic # 1 Polarization: 43.22 SS G_CDS: -0.08 Total: 43.14 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 6.99 Total: 9.73 kcal Atomic # 7 Polarization: -130.96 SS G_CDS: -5.00 Total: -135.97 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -1.65 Total: -30.25 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 1.90 Total: 44.03 kcal Total: -71.46 2.15 -69.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022075972.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.219 kcal (2) G-P(sol) polarization free energy of solvation -71.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds