Wall clock time and date at job start Fri Apr 10 2020 18:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47129 * 2 1 4 4 C 1.39672 * 126.07028 * 124.99892 * 3 2 1 5 5 C 1.38401 * 105.35802 * 180.02562 * 4 3 2 6 6 C 1.47160 * 126.88138 * 180.25870 * 5 4 3 7 7 O 1.21630 * 119.99961 * 174.77618 * 6 5 4 8 8 N 1.34777 * 120.00077 * 354.78456 * 6 5 4 9 9 C 1.46503 * 119.99845 * 184.71506 * 8 6 5 10 10 C 1.53006 * 109.46735 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.51678 * 60.00034 * 10 9 8 12 12 C 1.53297 * 109.51039 * 180.10384 * 10 9 8 13 13 N 1.47150 * 108.38466 * 172.22590 * 12 10 9 14 14 C 1.36940 * 120.98267 * 129.48540 * 13 12 10 15 15 H 1.07997 * 119.99645 * 210.29013 * 14 13 12 16 16 C 1.38813 * 120.00040 * 30.29416 * 14 13 12 17 17 N 1.31616 * 119.99892 * 10.25860 * 16 14 13 18 18 Si 1.86802 * 119.99971 * 190.26410 * 16 14 13 19 19 H 1.48500 * 109.47036 * 59.99398 * 18 16 14 20 20 H 1.48491 * 109.47200 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46830 * 299.99637 * 18 16 14 22 22 C 1.47156 * 118.03454 * 309.46062 * 13 12 10 23 23 C 1.53289 * 108.38358 * 50.53701 * 22 13 12 24 24 O 1.42959 * 109.26837 * 307.72286 * 23 22 13 25 25 N 1.36597 * 106.23357 * 0.02562 * 5 4 3 26 26 C 1.46507 * 125.18880 * 180.02562 * 25 5 4 27 27 N 1.28441 * 109.62256 * 359.97438 * 25 5 4 28 28 H 1.08995 * 109.47162 * 60.00220 * 1 2 3 29 29 H 1.09004 * 109.46961 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47106 * 299.99908 * 1 2 3 31 31 H 1.09006 * 109.47367 * 240.00158 * 2 1 3 32 32 H 1.09000 * 109.47463 * 120.00439 * 2 1 3 33 33 H 1.08004 * 127.31690 * 0.04513 * 4 3 2 34 34 H 0.97004 * 119.99949 * 4.71116 * 8 6 5 35 35 H 1.08998 * 109.47470 * 299.99550 * 9 8 6 36 36 H 1.08993 * 109.47212 * 60.00101 * 9 8 6 37 37 H 1.09005 * 109.68107 * 291.94768 * 12 10 9 38 38 H 1.08998 * 109.68760 * 52.49555 * 12 10 9 39 39 H 0.97010 * 119.99532 * 180.02562 * 17 16 14 40 40 H 1.08998 * 109.67883 * 170.25695 * 22 13 12 41 41 H 1.08996 * 109.68118 * 290.77267 * 22 13 12 42 42 H 1.09006 * 109.51569 * 67.61917 * 23 22 13 43 43 H 1.08993 * 109.51350 * 187.71973 * 23 22 13 44 44 H 1.08996 * 109.46830 * 93.50086 * 26 25 5 45 45 H 1.08996 * 109.46916 * 213.50176 * 26 25 5 46 46 H 1.08998 * 109.47148 * 333.50113 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9170 1.9803 0.9248 5 6 3.0833 3.2946 0.5242 6 6 3.9278 4.3138 1.1673 7 8 4.0566 5.4090 0.6541 8 7 4.5588 4.0336 2.3248 9 6 5.3153 5.0791 3.0184 10 6 5.9278 4.5025 4.2965 11 1 6.5958 3.6799 4.0412 12 6 6.7175 5.5964 5.0244 13 7 7.1363 5.0728 6.3343 14 6 8.4394 5.1628 6.7455 15 1 8.8509 4.4121 7.4039 16 6 9.2314 6.2189 6.3161 17 7 8.6855 7.2362 5.6842 18 14 11.0718 6.1960 6.6350 19 1 11.6730 5.0069 5.9794 20 1 11.6855 7.4295 6.0809 21 1 11.3199 6.1332 8.0977 22 6 6.1134 4.4501 7.1894 23 6 5.3531 3.4121 6.3561 24 8 4.8865 4.0244 5.1515 25 7 2.3107 3.4546 -0.5908 26 6 2.1806 4.6968 -1.3567 27 7 1.7164 2.3497 -0.8660 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.3742 1.4911 1.7722 34 1 4.5119 3.1398 2.6987 35 1 6.1093 5.4454 2.3678 36 1 4.6474 5.9013 3.2749 37 1 7.5964 5.8661 4.4388 38 1 6.0859 6.4736 5.1646 39 1 9.2391 7.9741 5.3838 40 1 6.5923 3.9606 8.0374 41 1 5.4214 5.2120 7.5482 42 1 6.0188 2.5851 6.1090 43 1 4.5039 3.0376 6.9276 44 1 2.9006 4.6961 -2.1750 45 1 1.1711 4.7703 -1.7610 46 1 2.3734 5.5480 -0.7039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035563497.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:18 Heat of formation + Delta-G solvation = 14.675509 kcal Electronic energy + Delta-G solvation = -27311.680544 eV Core-core repulsion = 23431.807990 eV Total energy + Delta-G solvation = -3879.872554 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.68130 -39.47615 -38.40036 -35.23919 -34.72331 -34.34774 -32.18805 -31.49687 -31.24942 -30.36657 -27.46706 -27.05815 -25.68899 -23.61191 -23.42475 -23.06124 -21.78196 -20.89441 -19.92888 -19.24298 -17.81104 -16.98226 -16.51007 -16.29616 -16.00408 -15.49765 -15.17678 -14.70199 -14.52662 -14.38659 -14.31760 -14.06922 -13.97822 -13.77392 -13.27162 -13.08836 -13.00616 -12.84422 -12.62829 -12.36750 -12.22817 -11.69640 -11.58208 -11.48567 -11.09343 -10.89633 -10.77216 -10.70713 -10.45723 -10.31858 -10.18088 -10.02624 -9.69955 -9.31586 -9.11319 -9.02598 -8.91583 -8.60918 -6.74722 -5.88631 -3.38268 1.17277 2.25046 2.39948 3.15845 3.23325 3.32278 3.37882 3.38394 4.18269 4.27134 4.39192 4.48418 4.75717 4.92654 5.01122 5.10921 5.13411 5.15859 5.26131 5.31361 5.38083 5.48090 5.51358 5.55180 5.58043 5.68276 5.81876 5.88446 5.89908 5.95788 6.00558 6.06434 6.17557 6.29841 6.33385 6.44595 6.55265 6.60671 6.75225 7.03140 7.44715 7.46325 7.66341 7.78908 7.92784 8.12931 8.31767 9.07402 9.68254 10.27025 11.19152 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.019858 B = 0.002627 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.688942 B =10657.427965 C =11453.431998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.036 4.036 3 C 0.024 3.976 4 C -0.186 4.186 5 C -0.031 4.031 6 C 0.587 3.413 7 O -0.545 6.545 8 N -0.701 5.701 9 C 0.134 3.866 10 C 0.054 3.946 11 H 0.057 0.943 12 C 0.154 3.846 13 N -0.594 5.594 14 C -0.259 4.259 15 H 0.067 0.933 16 C 0.006 3.994 17 N -0.904 5.904 18 Si 0.908 3.092 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.281 1.281 22 C 0.109 3.891 23 C 0.050 3.950 24 O -0.390 6.390 25 N -0.258 5.258 26 C 0.085 3.915 27 N -0.277 5.277 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.161 0.839 34 H 0.406 0.594 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.032 0.968 39 H 0.257 0.743 40 H 0.062 0.938 41 H 0.027 0.973 42 H 0.043 0.957 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.468 -11.815 -10.524 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.075 4.075 3 C -0.132 4.132 4 C -0.215 4.215 5 C -0.159 4.159 6 C 0.372 3.628 7 O -0.424 6.424 8 N -0.351 5.351 9 C 0.011 3.989 10 C -0.006 4.006 11 H 0.075 0.925 12 C 0.028 3.972 13 N -0.318 5.318 14 C -0.388 4.388 15 H 0.084 0.916 16 C -0.193 4.193 17 N -0.548 5.548 18 Si 0.737 3.263 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.208 1.208 22 C -0.018 4.018 23 C -0.028 4.028 24 O -0.310 6.310 25 N -0.045 5.045 26 C -0.055 4.055 27 N -0.111 5.111 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.178 0.822 34 H 0.241 0.759 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.045 0.955 42 H 0.061 0.939 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.109 0.891 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.102 -10.456 -11.993 21.261 hybrid contribution 1.725 -0.409 1.163 2.120 sum -12.377 -10.866 -10.831 19.712 Atomic orbital electron populations 1.21712 0.94643 1.01599 1.02455 1.19867 0.96144 0.88416 1.03044 1.21962 1.00205 0.96676 0.94369 1.22142 1.03722 0.92597 1.03058 1.21449 1.03330 0.96726 0.94430 1.16908 0.79283 0.85690 0.80962 1.90781 1.63748 1.23817 1.64018 1.45670 1.51484 1.15463 1.22482 1.21520 0.95869 0.90027 0.91506 1.23187 0.89384 0.98913 0.89111 0.92506 1.21305 0.97879 0.91161 0.86894 1.43985 1.04667 1.69648 1.13483 1.19124 0.86024 1.05046 1.28591 0.91553 1.25196 0.98946 0.94752 1.00429 1.69945 1.34492 1.08134 1.42190 0.86293 0.84824 0.77009 0.78149 1.20885 1.21462 1.20755 1.21615 0.91991 0.94568 0.93597 1.23007 0.98199 0.95272 0.86297 1.87774 1.32776 1.78352 1.32081 1.45535 1.30333 1.09476 1.19151 1.22362 1.04000 0.81997 0.97113 1.73071 1.19986 0.92650 1.25383 0.92224 0.92333 0.92672 0.90550 0.89967 0.82195 0.75906 0.89539 0.90415 0.88550 0.95003 0.93270 0.91960 0.95529 0.93851 0.89971 0.89776 0.89108 0.86903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.87 37.16 0.37 -0.75 16 2 C -0.04 -0.29 6.51 -27.88 -0.18 -0.47 16 3 C 0.02 0.27 6.49 -82.47 -0.54 -0.26 16 4 C -0.19 -2.13 10.43 -38.99 -0.41 -2.54 16 5 C -0.03 -0.41 6.96 -82.06 -0.57 -0.98 16 6 C 0.59 8.72 7.79 -12.64 -0.10 8.62 16 7 O -0.55 -9.36 14.69 5.25 0.08 -9.29 16 8 N -0.70 -9.84 5.44 -61.47 -0.33 -10.18 16 9 C 0.13 2.18 5.37 -4.04 -0.02 2.15 16 10 C 0.05 0.97 2.86 -26.57 -0.08 0.90 16 11 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 12 C 0.15 3.53 4.67 -3.53 -0.02 3.51 16 13 N -0.59 -14.46 3.04 -171.83 -0.52 -14.99 16 14 C -0.26 -6.86 9.64 -15.06 -0.15 -7.01 16 15 H 0.07 1.72 7.85 -52.49 -0.41 1.30 16 16 C 0.01 0.16 5.08 -17.43 -0.09 0.07 16 17 N -0.90 -25.46 11.04 55.49 0.61 -24.85 16 18 Si 0.91 21.08 29.57 -169.99 -5.03 16.06 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.11 2.20 6.74 -3.53 -0.02 2.17 16 23 C 0.05 0.84 6.98 37.31 0.26 1.10 16 24 O -0.39 -6.95 10.14 -35.23 -0.36 -7.31 16 25 N -0.26 -3.31 3.75 -63.88 -0.24 -3.55 16 26 C 0.09 0.85 10.87 59.85 0.65 1.50 16 27 N -0.28 -3.54 11.87 33.64 0.40 -3.14 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 33 H 0.16 1.42 7.58 -52.48 -0.40 1.02 16 34 H 0.41 4.95 7.38 -40.82 -0.30 4.65 16 35 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.10 2.43 6.24 -51.93 -0.32 2.11 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.11 1.24 6.23 -51.93 -0.32 0.91 16 LS Contribution 376.64 15.07 5.68 5.68 Total: -1.00 -31.85 376.64 -7.83 -39.68 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -7.23 Total: 3.87 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -0.89 Total: 8.03 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -0.08 Total: -56.72 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.28 Total: -16.59 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.85 -7.83 -39.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035563497.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.352 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds