Wall clock time and date at job start Fri Apr 10 2020 18:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.51917 * 2 1 4 4 C 1.53185 * 109.49913 * 239.91672 * 2 1 3 5 5 N 1.46928 * 108.77733 * 185.41202 * 4 2 1 6 6 C 1.34777 * 120.63277 * 233.58480 * 5 4 2 7 7 O 1.21704 * 119.99714 * 355.02533 * 6 5 4 8 8 C 1.46652 * 120.00074 * 175.02656 * 6 5 4 9 9 C 1.35145 * 126.37756 * 87.57546 * 8 6 5 10 10 N 1.37018 * 107.87447 * 179.88110 * 9 8 6 11 11 C 1.46501 * 125.65181 * 180.15330 * 10 9 8 12 12 C 1.34619 * 108.69803 * 0.39246 * 10 9 8 13 13 O 1.21731 * 125.72781 * 179.74154 * 12 10 9 14 14 N 1.34762 * 108.54506 * 359.76192 * 12 10 9 15 15 C 1.46503 * 126.18090 * 180.02562 * 14 12 10 16 16 C 1.46925 * 118.73621 * 53.61122 * 5 4 2 17 17 C 1.53195 * 108.77302 * 306.39103 * 16 5 4 18 18 C 1.53039 * 109.49501 * 120.07816 * 2 1 3 19 19 H 1.09003 * 109.45258 * 61.30424 * 18 2 1 20 20 N 1.46500 * 109.46201 * 301.33354 * 18 2 1 21 21 C 1.36940 * 119.99938 * 154.93351 * 20 18 2 22 22 H 1.07994 * 120.00071 * 0.02562 * 21 20 18 23 23 C 1.38813 * 119.99785 * 180.02562 * 21 20 18 24 24 N 1.31615 * 119.99877 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 120.00100 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.47202 * 269.99795 * 25 23 21 27 27 H 1.48493 * 109.47112 * 30.00357 * 25 23 21 28 28 H 1.48503 * 109.47080 * 150.00105 * 25 23 21 29 29 H 1.09002 * 109.47207 * 299.92283 * 1 2 3 30 30 H 1.08995 * 109.47248 * 59.92224 * 1 2 3 31 31 H 1.08996 * 109.46746 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.59002 * 65.62371 * 4 2 1 33 33 H 1.09003 * 109.70323 * 305.26868 * 4 2 1 34 34 H 1.08003 * 126.06462 * 0.02562 * 9 8 6 35 35 H 1.08997 * 109.47280 * 180.25871 * 11 10 9 36 36 H 1.09003 * 109.46951 * 300.25212 * 11 10 9 37 37 H 1.09002 * 109.47260 * 60.24889 * 11 10 9 38 38 H 1.08994 * 109.46811 * 269.99842 * 15 14 12 39 39 H 1.09002 * 109.46998 * 29.99619 * 15 14 12 40 40 H 1.08992 * 109.46755 * 149.99782 * 15 14 12 41 41 H 1.09000 * 109.58774 * 186.60657 * 16 5 4 42 42 H 1.09001 * 109.58961 * 66.17466 * 16 5 4 43 43 H 1.09004 * 109.49786 * 294.68446 * 17 16 5 44 44 H 1.09003 * 109.52260 * 174.60926 * 17 16 5 45 45 H 0.97001 * 120.00368 * 334.93962 * 20 18 2 46 46 H 0.96999 * 120.00193 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0414 -0.7238 -1.2495 5 7 3.5047 -0.8291 -1.1695 6 6 4.2812 -0.3865 -2.1782 7 8 3.7709 0.0225 -3.2046 8 6 5.7411 -0.3977 -2.0391 9 6 6.5668 -1.4254 -2.3367 10 7 7.8494 -1.0261 -2.0666 11 6 9.0538 -1.8392 -2.2524 12 6 7.8189 0.2353 -1.5973 13 8 8.7866 0.8903 -1.2563 14 7 6.5374 0.6509 -1.5680 15 6 6.0640 1.9641 -1.1234 16 6 4.1054 -1.4267 0.0309 17 6 3.5708 -0.6949 1.2661 18 6 2.0408 -0.7230 1.2484 19 1 1.6967 -1.7572 1.2352 20 7 1.5266 -0.0528 2.4453 21 6 1.3952 -0.7494 3.6169 22 1 1.6710 -1.7927 3.6587 23 6 0.9074 -0.1145 4.7509 24 7 0.7806 -0.7841 5.8769 25 14 0.4310 1.6904 4.6788 26 1 1.6092 2.5273 5.0200 27 1 -0.0341 2.0252 3.3089 28 1 -0.6609 1.9533 5.6504 29 1 -0.3634 0.5126 0.8907 30 1 -0.3633 0.5150 -0.8892 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7638 -0.1580 -2.1389 33 1 1.6055 -1.7216 -1.3004 34 1 6.2687 -2.3895 -2.7215 35 1 9.9299 -1.2649 -1.9514 36 1 8.9822 -2.7394 -1.6418 37 1 9.1453 -2.1185 -3.3020 38 1 5.8523 1.9313 -0.0548 39 1 6.8321 2.7125 -1.3189 40 1 5.1556 2.2255 -1.6660 41 1 5.1896 -1.3245 -0.0136 42 1 3.8376 -2.4818 0.0869 43 1 3.9159 0.3390 1.2541 44 1 3.9335 -1.1890 2.1675 45 1 1.2791 0.8843 2.4079 46 1 0.4401 -0.3404 6.6694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036306537.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:32 Heat of formation + Delta-G solvation = 7.577308 kcal Electronic energy + Delta-G solvation = -28508.125770 eV Core-core repulsion = 24627.945415 eV Total energy + Delta-G solvation = -3880.180355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.65023 -40.12731 -37.90481 -36.91935 -35.64855 -34.84659 -33.00210 -31.65787 -30.87395 -29.93929 -28.51006 -26.63923 -26.21142 -25.24868 -23.29510 -22.39011 -21.64714 -20.99680 -20.18464 -19.43595 -17.93173 -17.51309 -17.16733 -16.65312 -16.19472 -15.64057 -15.38394 -15.01361 -14.78764 -14.48404 -14.35574 -14.20500 -13.92061 -13.74721 -13.41932 -13.18377 -12.99359 -12.74397 -12.59503 -12.57459 -12.51463 -12.03139 -11.92401 -11.70514 -11.46878 -11.10947 -10.98174 -10.81533 -10.72818 -10.60955 -10.29977 -10.20024 -10.08325 -9.86594 -9.64344 -8.99773 -8.72571 -7.97774 -7.34098 -5.83458 -3.19376 1.57506 1.72472 2.40816 2.66008 2.74783 3.30889 3.32052 3.35076 3.41275 4.27831 4.53018 4.55016 4.77670 4.81702 4.90287 4.93083 4.93670 5.07153 5.13735 5.16420 5.17423 5.23461 5.36088 5.43826 5.45807 5.53091 5.58351 5.69757 5.75533 5.86013 5.94191 6.01772 6.09040 6.17917 6.20545 6.28192 6.38679 6.43942 6.60814 6.68217 6.85103 7.01628 7.21006 7.88418 7.91594 8.04004 8.35483 9.13435 9.86184 10.05551 11.34743 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016067 B = 0.003553 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.323604 B = 7879.034923 C = 8517.796282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 H 0.069 0.931 4 C 0.121 3.879 5 N -0.591 5.591 6 C 0.593 3.407 7 O -0.529 6.529 8 C -0.019 4.019 9 C 0.037 3.963 10 N -0.526 5.526 11 C 0.095 3.905 12 C 0.650 3.350 13 O -0.568 6.568 14 N -0.514 5.514 15 C 0.099 3.901 16 C 0.107 3.893 17 C -0.151 4.151 18 C 0.189 3.811 19 H 0.058 0.942 20 N -0.745 5.745 21 C -0.244 4.244 22 H 0.090 0.910 23 C 0.007 3.993 24 N -0.933 5.933 25 Si 0.882 3.118 26 H -0.285 1.285 27 H -0.277 1.277 28 H -0.291 1.291 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.189 0.811 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.361 0.639 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.376 -2.825 -18.525 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.087 0.913 4 C -0.001 4.001 5 N -0.323 5.323 6 C 0.377 3.623 7 O -0.405 6.405 8 C -0.128 4.128 9 C -0.090 4.090 10 N -0.244 5.244 11 C -0.046 4.046 12 C 0.353 3.647 13 O -0.446 6.446 14 N -0.235 5.235 15 C -0.042 4.042 16 C -0.016 4.016 17 C -0.192 4.192 18 C 0.079 3.921 19 H 0.076 0.924 20 N -0.386 5.386 21 C -0.374 4.374 22 H 0.108 0.892 23 C -0.189 4.189 24 N -0.580 5.580 25 Si 0.713 3.287 26 H -0.212 1.212 27 H -0.203 1.203 28 H -0.218 1.218 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.206 0.794 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.194 0.806 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.807 -2.270 -18.594 21.626 hybrid contribution -0.327 1.227 0.269 1.298 sum 10.480 -1.043 -18.325 21.136 Atomic orbital electron populations 1.21673 0.93902 1.02264 1.01703 1.21798 0.96748 1.00004 0.94825 0.91296 1.21784 0.77614 1.01442 0.99282 1.48168 1.07276 1.59191 1.17673 1.16889 0.83888 0.78078 0.83410 1.90853 1.74324 1.47105 1.28194 1.19730 0.92406 0.89732 1.10907 1.21699 0.82028 0.99533 1.05772 1.44794 1.07468 1.13996 1.58104 1.21838 0.85163 0.94965 1.02659 1.16082 0.83377 0.82256 0.82988 1.91038 1.36169 1.59531 1.57859 1.45257 1.05849 1.13954 1.58467 1.21816 1.01068 0.80486 1.00865 1.21914 0.97928 0.97559 0.84164 1.22655 0.99890 1.00389 0.96278 1.20174 0.90415 0.96126 0.85396 0.92383 1.42762 1.78080 1.10171 1.07624 1.19036 1.36576 0.95799 0.85964 0.89196 1.24657 1.01242 0.97400 0.95619 1.69691 1.51958 1.35694 1.00667 0.86596 0.78244 0.86845 0.77062 1.21168 1.20301 1.21768 0.91308 0.93488 0.92452 0.89078 0.90819 0.79430 0.88825 0.90380 0.90564 0.90692 0.89321 0.89886 0.90384 0.90752 0.92399 0.89955 0.80620 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.03 37.16 0.34 -1.57 16 2 C -0.11 -1.59 2.46 -90.50 -0.22 -1.81 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.12 1.46 5.70 -3.71 -0.02 1.44 16 5 N -0.59 -7.07 2.97 -174.31 -0.52 -7.59 16 6 C 0.59 7.60 7.06 -12.86 -0.09 7.51 16 7 O -0.53 -8.30 16.54 5.19 0.09 -8.21 16 8 C -0.02 -0.22 4.65 -81.91 -0.38 -0.60 16 9 C 0.04 0.34 11.21 -16.33 -0.18 0.16 16 10 N -0.53 -5.33 3.12 -128.78 -0.40 -5.74 16 11 C 0.10 0.60 11.16 59.85 0.67 1.26 16 12 C 0.65 8.89 8.49 -87.07 -0.74 8.15 16 13 O -0.57 -9.53 17.35 5.16 0.09 -9.44 16 14 N -0.51 -6.48 3.21 -124.83 -0.40 -6.88 16 15 C 0.10 1.09 10.92 59.85 0.65 1.74 16 16 C 0.11 1.24 6.35 -3.71 -0.02 1.21 16 17 C -0.15 -2.25 5.66 -26.61 -0.15 -2.40 16 18 C 0.19 3.15 2.19 -67.89 -0.15 3.00 16 19 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 20 N -0.74 -15.99 4.21 -53.39 -0.22 -16.22 16 21 C -0.24 -6.41 10.41 -15.06 -0.16 -6.56 16 22 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 23 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 24 N -0.93 -28.32 13.97 55.49 0.78 -27.54 16 25 Si 0.88 21.33 27.74 -169.99 -4.71 16.61 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H 0.07 1.12 7.36 -51.93 -0.38 0.74 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.13 7.03 -51.93 -0.37 0.77 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.19 1.05 8.06 -52.48 -0.42 0.63 16 35 H 0.09 0.67 7.68 -51.93 -0.40 0.27 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 40 H 0.08 0.87 7.90 -51.93 -0.41 0.46 16 41 H 0.08 0.86 6.19 -51.93 -0.32 0.54 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.36 7.80 5.37 -40.82 -0.22 7.58 16 46 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 374.17 15.07 5.64 5.64 Total: -1.00 -34.73 374.17 -7.41 -42.14 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -7.18 Total: 5.61 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: -0.56 Total: 11.62 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: -0.77 Total: -63.97 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.18 Total: -17.66 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.71 Total: 16.61 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.73 -7.41 -42.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036306537.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.712 kcal (2) G-P(sol) polarization free energy of solvation -34.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds