Wall clock time and date at job start Fri Apr 10 2020 18:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.51917 * 2 1 4 4 C 1.53185 * 109.49913 * 239.91672 * 2 1 3 5 5 N 1.46928 * 108.77733 * 185.41202 * 4 2 1 6 6 C 1.34777 * 120.63277 * 233.58480 * 5 4 2 7 7 O 1.21704 * 119.99714 * 355.02533 * 6 5 4 8 8 C 1.46652 * 120.00074 * 175.02656 * 6 5 4 9 9 C 1.35145 * 126.37756 * 87.57546 * 8 6 5 10 10 N 1.37018 * 107.87447 * 179.88110 * 9 8 6 11 11 C 1.46501 * 125.65181 * 180.15330 * 10 9 8 12 12 C 1.34619 * 108.69803 * 0.39246 * 10 9 8 13 13 O 1.21731 * 125.72781 * 179.74154 * 12 10 9 14 14 N 1.34762 * 108.54506 * 359.76192 * 12 10 9 15 15 C 1.46503 * 126.18090 * 180.02562 * 14 12 10 16 16 C 1.46925 * 118.73621 * 53.61122 * 5 4 2 17 17 C 1.53195 * 108.77302 * 306.39103 * 16 5 4 18 18 C 1.53039 * 109.49501 * 120.07816 * 2 1 3 19 19 H 1.09003 * 109.45258 * 61.30424 * 18 2 1 20 20 N 1.46500 * 109.46201 * 301.33354 * 18 2 1 21 21 C 1.36940 * 119.99938 * 154.93351 * 20 18 2 22 22 H 1.07994 * 120.00071 * 0.02562 * 21 20 18 23 23 C 1.38813 * 119.99785 * 180.02562 * 21 20 18 24 24 N 1.31615 * 119.99877 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 120.00100 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.47202 * 269.99795 * 25 23 21 27 27 H 1.48493 * 109.47112 * 30.00357 * 25 23 21 28 28 H 1.48503 * 109.47080 * 150.00105 * 25 23 21 29 29 H 1.09002 * 109.47207 * 299.92283 * 1 2 3 30 30 H 1.08995 * 109.47248 * 59.92224 * 1 2 3 31 31 H 1.08996 * 109.46746 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.59002 * 65.62371 * 4 2 1 33 33 H 1.09003 * 109.70323 * 305.26868 * 4 2 1 34 34 H 1.08003 * 126.06462 * 0.02562 * 9 8 6 35 35 H 1.08997 * 109.47280 * 180.25871 * 11 10 9 36 36 H 1.09003 * 109.46951 * 300.25212 * 11 10 9 37 37 H 1.09002 * 109.47260 * 60.24889 * 11 10 9 38 38 H 1.08994 * 109.46811 * 269.99842 * 15 14 12 39 39 H 1.09002 * 109.46998 * 29.99619 * 15 14 12 40 40 H 1.08992 * 109.46755 * 149.99782 * 15 14 12 41 41 H 1.09000 * 109.58774 * 186.60657 * 16 5 4 42 42 H 1.09001 * 109.58961 * 66.17466 * 16 5 4 43 43 H 1.09004 * 109.49786 * 294.68446 * 17 16 5 44 44 H 1.09003 * 109.52260 * 174.60926 * 17 16 5 45 45 H 0.97001 * 120.00368 * 334.93962 * 20 18 2 46 46 H 0.96999 * 120.00193 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0414 -0.7238 -1.2495 5 7 3.5047 -0.8291 -1.1695 6 6 4.2812 -0.3865 -2.1782 7 8 3.7709 0.0225 -3.2046 8 6 5.7411 -0.3977 -2.0391 9 6 6.5668 -1.4254 -2.3367 10 7 7.8494 -1.0261 -2.0666 11 6 9.0538 -1.8392 -2.2524 12 6 7.8189 0.2353 -1.5973 13 8 8.7866 0.8903 -1.2563 14 7 6.5374 0.6509 -1.5680 15 6 6.0640 1.9641 -1.1234 16 6 4.1054 -1.4267 0.0309 17 6 3.5708 -0.6949 1.2661 18 6 2.0408 -0.7230 1.2484 19 1 1.6967 -1.7572 1.2352 20 7 1.5266 -0.0528 2.4453 21 6 1.3952 -0.7494 3.6169 22 1 1.6710 -1.7927 3.6587 23 6 0.9074 -0.1145 4.7509 24 7 0.7806 -0.7841 5.8769 25 14 0.4310 1.6904 4.6788 26 1 1.6092 2.5273 5.0200 27 1 -0.0341 2.0252 3.3089 28 1 -0.6609 1.9533 5.6504 29 1 -0.3634 0.5126 0.8907 30 1 -0.3633 0.5150 -0.8892 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7638 -0.1580 -2.1389 33 1 1.6055 -1.7216 -1.3004 34 1 6.2687 -2.3895 -2.7215 35 1 9.9299 -1.2649 -1.9514 36 1 8.9822 -2.7394 -1.6418 37 1 9.1453 -2.1185 -3.3020 38 1 5.8523 1.9313 -0.0548 39 1 6.8321 2.7125 -1.3189 40 1 5.1556 2.2255 -1.6660 41 1 5.1896 -1.3245 -0.0136 42 1 3.8376 -2.4818 0.0869 43 1 3.9159 0.3390 1.2541 44 1 3.9335 -1.1890 2.1675 45 1 1.2791 0.8843 2.4079 46 1 0.4401 -0.3404 6.6694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036306537.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:31 Heat of formation + Delta-G solvation = -15.604418 kcal Electronic energy + Delta-G solvation = -28509.131005 eV Core-core repulsion = 24627.945415 eV Total energy + Delta-G solvation = -3881.185590 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.52747 -41.17995 -39.11595 -37.96620 -36.46955 -36.28830 -34.47668 -33.22419 -31.75409 -31.42079 -29.37721 -27.62894 -27.12346 -26.56740 -24.59034 -23.50757 -23.00665 -21.90185 -21.40405 -20.53156 -19.48159 -18.73398 -18.09949 -17.55877 -17.19426 -16.77120 -16.62595 -16.18659 -16.02301 -15.73388 -15.31337 -15.15263 -15.03510 -14.90584 -14.76932 -14.43697 -14.02745 -13.96172 -13.72982 -13.48022 -13.43743 -13.31016 -13.04634 -12.95118 -12.82127 -12.57709 -12.39727 -12.09065 -12.02884 -11.85546 -11.79870 -11.75558 -11.23032 -11.16506 -10.94445 -10.87668 -9.77099 -9.26396 -8.85511 -7.98925 -5.30499 0.78405 0.83990 1.38519 1.40192 1.47593 1.52497 1.68409 1.82114 2.46590 2.50211 3.32929 3.38121 3.55433 3.76071 3.82716 3.99270 4.04304 4.08083 4.21054 4.25595 4.29571 4.36953 4.38790 4.48924 4.55608 4.58043 4.62330 4.75591 4.80856 4.81355 4.85229 4.92720 4.94955 5.02924 5.15571 5.23390 5.28502 5.40317 5.45709 5.60025 5.65125 5.82178 6.16541 6.22517 6.25474 6.90878 7.08788 7.12014 7.89294 8.06509 9.22652 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016067 B = 0.003553 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.323604 B = 7879.034923 C = 8517.796282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 H 0.064 0.936 4 C 0.127 3.873 5 N -0.587 5.587 6 C 0.604 3.396 7 O -0.558 6.558 8 C -0.055 4.055 9 C 0.070 3.930 10 N -0.519 5.519 11 C 0.087 3.913 12 C 0.632 3.368 13 O -0.611 6.611 14 N -0.517 5.517 15 C 0.097 3.903 16 C 0.120 3.880 17 C -0.144 4.144 18 C 0.183 3.817 19 H 0.053 0.947 20 N -0.748 5.748 21 C -0.216 4.216 22 H 0.062 0.938 23 C -0.063 4.063 24 N -0.985 5.985 25 Si 0.945 3.055 26 H -0.285 1.285 27 H -0.251 1.251 28 H -0.301 1.301 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.232 0.768 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.050 0.950 44 H 0.061 0.939 45 H 0.362 0.638 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.707 -3.633 -21.216 24.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.124 4.124 3 H 0.082 0.918 4 C 0.005 3.995 5 N -0.318 5.318 6 C 0.389 3.611 7 O -0.436 6.436 8 C -0.163 4.163 9 C -0.058 4.058 10 N -0.235 5.235 11 C -0.053 4.053 12 C 0.334 3.666 13 O -0.493 6.493 14 N -0.238 5.238 15 C -0.044 4.044 16 C -0.002 4.002 17 C -0.184 4.184 18 C 0.075 3.925 19 H 0.071 0.929 20 N -0.390 5.390 21 C -0.347 4.347 22 H 0.080 0.920 23 C -0.254 4.254 24 N -0.636 5.636 25 Si 0.774 3.226 26 H -0.212 1.212 27 H -0.175 1.175 28 H -0.228 1.228 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.248 0.752 35 H 0.097 0.903 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.113 0.887 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.195 0.805 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.148 -3.108 -21.361 24.294 hybrid contribution -0.368 1.356 1.030 1.742 sum 10.780 -1.752 -20.331 23.078 Atomic orbital electron populations 1.21639 0.93610 1.02493 1.01556 1.21676 0.96940 0.99573 0.94185 0.91776 1.21740 0.77691 1.02204 0.97910 1.48150 1.07249 1.58908 1.17505 1.16890 0.84220 0.77109 0.82848 1.90841 1.75021 1.48325 1.29426 1.19689 0.92054 0.90557 1.13980 1.22398 0.80834 1.00100 1.02444 1.45065 1.08997 1.13023 1.56426 1.22179 0.83187 0.94927 1.04988 1.16347 0.83159 0.83333 0.83730 1.90992 1.37467 1.60911 1.59939 1.45333 1.05863 1.14450 1.58174 1.21846 1.01181 0.80437 1.00914 1.21815 0.98371 0.97911 0.82152 1.22459 0.98275 1.00325 0.97372 1.20429 0.91447 0.95812 0.84844 0.92858 1.42795 1.78367 1.10157 1.07655 1.19009 1.33599 0.94747 0.87382 0.91959 1.25375 1.02805 1.01752 0.95471 1.69861 1.54597 1.37611 1.01531 0.85557 0.77435 0.81661 0.77990 1.21207 1.17530 1.22807 0.93944 0.91094 0.92080 0.88826 0.88972 0.75194 0.90253 0.87721 0.87861 0.90660 0.89316 0.89517 0.89271 0.88674 0.93117 0.92057 0.80492 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.03 71.98 0.65 -2.80 16 2 C -0.10 -2.67 2.46 -10.72 -0.03 -2.70 16 3 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 4 C 0.13 2.67 5.70 86.36 0.49 3.16 16 5 N -0.59 -12.30 2.97 -823.62 -2.45 -14.75 16 6 C 0.60 13.83 7.06 86.44 0.61 14.44 16 7 O -0.56 -16.20 16.54 -4.36 -0.07 -16.27 16 8 C -0.06 -1.14 4.65 39.35 0.18 -0.95 16 9 C 0.07 1.01 11.21 83.17 0.93 1.94 16 10 N -0.52 -9.09 3.12 -679.63 -2.12 -11.21 16 11 C 0.09 0.82 11.16 127.77 1.43 2.24 16 12 C 0.63 16.63 8.49 179.11 1.52 18.15 16 13 O -0.61 -20.67 17.35 -4.45 -0.08 -20.75 16 14 N -0.52 -12.41 3.21 -667.05 -2.14 -14.55 16 15 C 0.10 2.11 10.92 127.77 1.39 3.50 16 16 C 0.12 2.43 6.35 86.36 0.55 2.98 16 17 C -0.14 -4.10 5.66 30.67 0.17 -3.93 16 18 C 0.18 5.86 2.19 45.02 0.10 5.96 16 19 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 20 N -0.75 -31.66 4.21 -322.81 -1.36 -33.02 16 21 C -0.22 -11.49 10.41 84.03 0.87 -10.61 16 22 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 23 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 24 N -0.98 -61.61 13.97 21.65 0.30 -61.30 16 25 Si 0.94 44.45 27.74 68.60 1.90 46.35 16 26 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 27 H -0.25 -10.55 6.52 99.48 0.65 -9.90 16 28 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 29 H 0.04 1.31 7.36 -2.39 -0.02 1.29 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 2.03 7.03 -2.38 -0.02 2.01 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.23 1.21 8.06 -2.91 -0.02 1.19 16 35 H 0.08 1.03 7.68 -2.39 -0.02 1.01 16 36 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.09 1.87 8.08 -2.39 -0.02 1.85 16 40 H 0.09 1.77 7.90 -2.39 -0.02 1.75 16 41 H 0.09 1.69 6.19 -2.39 -0.01 1.67 16 42 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.36 15.20 5.37 -92.71 -0.50 14.70 16 46 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -78.11 374.17 3.76 -74.35 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.43 Total: 22.87 kcal Atomic # 6 Polarization: 18.94 SS G_CDS: 9.35 Total: 28.29 kcal Atomic # 7 Polarization: -127.07 SS G_CDS: -7.77 Total: -134.84 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -0.15 Total: -37.02 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.90 Total: 46.35 kcal Total: -78.11 3.76 -74.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036306537.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.747 kcal (2) G-P(sol) polarization free energy of solvation -78.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds