Wall clock time and date at job start Fri Apr 10 2020 18:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.49854 * 2 1 4 4 C 1.52766 * 109.56076 * 240.03543 * 2 1 3 5 5 N 1.46929 * 109.00229 * 185.55012 * 4 2 1 6 6 C 1.34780 * 120.62784 * 233.57903 * 5 4 2 7 7 O 1.21704 * 119.99878 * 4.72271 * 6 5 4 8 8 C 1.46657 * 119.99691 * 184.72122 * 6 5 4 9 9 C 1.35143 * 126.38014 * 272.08089 * 8 6 5 10 10 N 1.37015 * 107.88012 * 180.02562 * 9 8 6 11 11 C 1.46500 * 125.65112 * 180.26368 * 10 9 8 12 12 C 1.34619 * 108.69498 * 0.02562 * 10 9 8 13 13 O 1.21728 * 125.72764 * 179.97438 * 12 10 9 14 14 N 1.34761 * 108.54771 * 0.02562 * 12 10 9 15 15 C 1.46495 * 126.18245 * 179.97438 * 14 12 10 16 16 C 1.46921 * 118.74219 * 53.31246 * 5 4 2 17 17 C 1.53199 * 108.77446 * 306.64006 * 16 5 4 18 18 C 1.53037 * 109.30937 * 54.63399 * 17 16 5 19 19 H 1.09007 * 109.45692 * 178.61571 * 18 17 16 20 20 N 1.46494 * 109.46395 * 58.66093 * 18 17 16 21 21 C 1.36934 * 120.00373 * 84.99762 * 20 18 17 22 22 H 1.08001 * 120.00112 * 359.97438 * 21 20 18 23 23 C 1.38817 * 119.99913 * 180.02562 * 21 20 18 24 24 N 1.31613 * 120.00060 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99617 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46848 * 60.00255 * 25 23 21 27 27 H 1.48508 * 109.46650 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47401 * 299.99832 * 25 23 21 29 29 H 1.09004 * 109.46797 * 299.92753 * 1 2 3 30 30 H 1.09000 * 109.47578 * 59.92990 * 1 2 3 31 31 H 1.09004 * 109.46871 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.50934 * 65.66951 * 4 2 1 33 33 H 1.09000 * 109.42974 * 305.38387 * 4 2 1 34 34 H 1.08002 * 126.06014 * 0.06313 * 9 8 6 35 35 H 1.09002 * 109.46728 * 179.71724 * 11 10 9 36 36 H 1.08996 * 109.47275 * 299.71776 * 11 10 9 37 37 H 1.09003 * 109.46904 * 59.72232 * 11 10 9 38 38 H 1.08995 * 109.47547 * 0.02562 * 15 14 12 39 39 H 1.08998 * 109.47654 * 120.01893 * 15 14 12 40 40 H 1.09006 * 109.46947 * 240.01539 * 15 14 12 41 41 H 1.09008 * 109.58564 * 66.42329 * 16 5 4 42 42 H 1.08994 * 109.58921 * 186.85025 * 16 5 4 43 43 H 1.08998 * 109.49519 * 174.58450 * 17 16 5 44 44 H 1.08994 * 109.49411 * 294.68015 * 17 16 5 45 45 H 0.97011 * 119.99592 * 264.99670 * 20 18 17 46 46 H 0.97003 * 119.99860 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7190 -1.2471 5 7 3.5046 -0.8293 -1.1695 6 6 4.2811 -0.3860 -2.1780 7 8 3.7783 0.1886 -3.1257 8 6 5.7318 -0.5960 -2.1332 9 6 6.6430 0.2223 -1.5618 10 7 7.8811 -0.3363 -1.7411 11 6 9.1485 0.2268 -1.2690 12 6 7.7395 -1.4911 -2.4184 13 8 8.6427 -2.2391 -2.7447 14 7 6.4302 -1.6794 -2.6756 15 6 5.8442 -2.8144 -3.3929 16 6 4.1053 -1.4266 0.0309 17 6 3.5709 -0.6947 1.2661 18 6 2.0409 -0.7228 1.2484 19 1 1.6582 -0.2240 2.1390 20 7 1.5784 -2.1128 1.2313 21 6 1.4469 -2.8052 2.4053 22 1 1.6845 -2.3268 3.3440 23 6 1.0092 -4.1224 2.3889 24 7 0.7201 -4.7056 1.2450 25 14 0.8305 -5.0672 3.9905 26 1 -0.1480 -4.3748 4.8670 27 1 0.3500 -6.4426 3.7028 28 1 2.1466 -5.1351 4.6747 29 1 -0.3633 0.5127 0.8907 30 1 -0.3634 0.5149 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7645 -0.1500 -2.1346 33 1 1.6020 -1.7152 -1.2971 34 1 6.4324 1.1516 -1.0533 35 1 9.9675 -0.4351 -1.5507 36 1 9.3015 1.2068 -1.7210 37 1 9.1195 0.3276 -0.1840 38 1 6.6351 -3.5005 -3.6955 39 1 5.1428 -3.3339 -2.7400 40 1 5.3184 -2.4532 -4.2768 41 1 3.8375 -2.4818 0.0871 42 1 5.1896 -1.3246 -0.0137 43 1 3.9335 -1.1892 2.1672 44 1 3.9160 0.3391 1.2539 45 1 1.3653 -2.5426 0.3881 46 1 0.4138 -5.6260 1.2336 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036306538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:37 Heat of formation + Delta-G solvation = 5.705490 kcal Electronic energy + Delta-G solvation = -28781.134012 eV Core-core repulsion = 24900.872489 eV Total energy + Delta-G solvation = -3880.261523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.52055 -39.96527 -37.80420 -36.80330 -35.52443 -34.34418 -32.91632 -31.49531 -30.72290 -29.25500 -28.38624 -26.45256 -26.04212 -25.06062 -23.57449 -22.75096 -21.73533 -20.89551 -19.86326 -18.46519 -17.62134 -17.38656 -16.99876 -16.48129 -15.98930 -15.51935 -15.21766 -14.89528 -14.48390 -14.41027 -14.25238 -14.04724 -14.00257 -13.44475 -13.31875 -13.10453 -12.99528 -12.67637 -12.58748 -12.42453 -12.27310 -11.81739 -11.53870 -11.37825 -11.23746 -10.93765 -10.84961 -10.67593 -10.55425 -10.50448 -10.26499 -10.05352 -9.91418 -9.88226 -9.60687 -8.98041 -8.38289 -7.84550 -7.03276 -5.83888 -3.12466 1.72369 1.88092 2.60465 2.76698 2.93540 3.38866 3.44247 3.45139 3.50218 4.46254 4.53369 4.68128 4.90563 4.94865 5.01761 5.13056 5.23940 5.26675 5.28319 5.30801 5.31847 5.46581 5.54456 5.56935 5.66048 5.73728 5.81418 5.84639 5.98244 6.02540 6.16358 6.21504 6.26313 6.32020 6.43445 6.49845 6.58186 6.62307 6.69455 6.85929 6.92247 7.13603 7.49760 7.63752 8.11654 8.15239 8.34555 9.46397 10.02241 10.37113 11.38351 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013903 B = 0.003896 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.531124 B = 7185.534496 C = 7983.407039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.067 0.933 4 C 0.118 3.882 5 N -0.584 5.584 6 C 0.590 3.410 7 O -0.534 6.534 8 C -0.013 4.013 9 C 0.034 3.966 10 N -0.526 5.526 11 C 0.096 3.904 12 C 0.650 3.350 13 O -0.572 6.572 14 N -0.514 5.514 15 C 0.096 3.904 16 C 0.114 3.886 17 C -0.148 4.148 18 C 0.178 3.822 19 H 0.052 0.948 20 N -0.718 5.718 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.009 4.009 24 N -0.932 5.932 25 Si 0.904 3.096 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.054 0.946 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.188 0.812 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.049 0.951 45 H 0.383 0.617 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.393 11.702 -4.864 16.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.085 0.915 4 C -0.004 4.004 5 N -0.315 5.315 6 C 0.374 3.626 7 O -0.411 6.411 8 C -0.122 4.122 9 C -0.093 4.093 10 N -0.244 5.244 11 C -0.046 4.046 12 C 0.353 3.647 13 O -0.450 6.450 14 N -0.235 5.235 15 C -0.046 4.046 16 C -0.008 4.008 17 C -0.190 4.190 18 C 0.067 3.933 19 H 0.070 0.930 20 N -0.361 5.361 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.206 4.206 24 N -0.580 5.580 25 Si 0.735 3.265 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.214 1.214 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.205 0.795 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.068 0.932 45 H 0.219 0.781 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.769 11.320 -5.452 16.548 hybrid contribution -0.152 -0.741 0.821 1.116 sum 10.616 10.579 -4.631 15.686 Atomic orbital electron populations 1.21668 0.94059 1.03255 1.00541 1.21632 0.96643 0.98941 0.95599 0.91456 1.21670 0.77695 1.01964 0.99025 1.48127 1.07239 1.58202 1.17970 1.16876 0.83663 0.79238 0.82825 1.90835 1.74111 1.42013 1.34122 1.19772 0.93317 0.92085 1.07032 1.21674 0.82130 1.00744 1.04721 1.44766 1.07718 1.20948 1.50957 1.21819 0.82947 0.99560 1.00236 1.16081 0.83018 0.82944 0.82667 1.91022 1.42321 1.50091 1.61561 1.45250 1.06170 1.20805 1.51287 1.21847 0.99717 0.86428 0.96579 1.21759 0.96606 0.99047 0.83364 1.22525 1.00507 0.98617 0.97306 1.20227 0.90723 0.87409 0.94901 0.92998 1.42458 1.79004 1.07691 1.06912 1.19161 1.37488 0.93892 0.86535 0.91307 1.24689 1.02150 0.97155 0.96567 1.69627 1.51540 1.13124 1.23721 0.86326 0.77760 0.79249 0.83161 1.21344 1.21787 1.21373 0.92727 0.93689 0.91006 0.89495 0.90239 0.79515 0.88888 0.90629 0.90451 0.88678 0.90275 0.90581 0.89606 0.91193 0.90654 0.93188 0.78136 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.05 37.16 0.34 -1.70 16 2 C -0.11 -1.62 2.66 -90.72 -0.24 -1.86 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 4 C 0.12 1.82 5.40 -3.93 -0.02 1.80 16 5 N -0.58 -8.68 2.98 -174.57 -0.52 -9.20 16 6 C 0.59 8.90 7.24 -12.86 -0.09 8.81 16 7 O -0.53 -9.50 16.52 5.19 0.09 -9.41 16 8 C -0.01 -0.18 4.80 -81.91 -0.39 -0.57 16 9 C 0.03 0.37 10.97 -16.34 -0.18 0.20 16 10 N -0.53 -6.04 3.12 -128.78 -0.40 -6.44 16 11 C 0.10 0.71 11.16 59.85 0.67 1.37 16 12 C 0.65 9.68 8.49 -87.07 -0.74 8.94 16 13 O -0.57 -10.11 17.11 5.16 0.09 -10.02 16 14 N -0.51 -7.23 3.21 -124.83 -0.40 -7.63 16 15 C 0.10 1.17 10.98 59.84 0.66 1.82 16 16 C 0.11 1.72 6.06 -3.71 -0.02 1.69 16 17 C -0.15 -2.25 5.78 -26.61 -0.15 -2.40 16 18 C 0.18 3.07 2.53 -67.89 -0.17 2.90 16 19 H 0.05 0.94 8.08 -51.92 -0.42 0.52 16 20 N -0.72 -15.63 3.64 -53.39 -0.19 -15.83 16 21 C -0.24 -6.02 9.93 -15.06 -0.15 -6.17 16 22 H 0.07 1.70 7.83 -52.49 -0.41 1.28 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 24 N -0.93 -26.29 13.06 55.49 0.72 -25.56 16 25 Si 0.90 21.31 29.55 -169.99 -5.02 16.28 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 1.26 7.54 -51.93 -0.39 0.86 16 32 H 0.09 1.33 6.99 -51.93 -0.36 0.97 16 33 H 0.08 1.36 6.64 -51.93 -0.34 1.02 16 34 H 0.19 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.09 0.75 7.68 -51.93 -0.40 0.36 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.09 1.10 7.73 -51.93 -0.40 0.70 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.09 1.55 7.74 -51.92 -0.40 1.15 16 42 H 0.07 0.95 6.07 -51.93 -0.32 0.64 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.38 8.97 5.94 -40.82 -0.24 8.72 16 46 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 372.96 15.07 5.62 5.62 Total: -1.00 -32.28 372.96 -7.67 -39.96 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -7.05 Total: 7.75 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: -0.60 Total: 14.48 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -0.79 Total: -64.66 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: 0.17 Total: -19.43 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.28 -7.67 -39.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036306538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.661 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds