Wall clock time and date at job start Fri Apr 10 2020 18:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.49943 * 2 1 4 4 C 1.53623 * 109.45864 * 120.20991 * 2 1 3 5 5 N 1.46928 * 108.54413 * 174.74073 * 4 2 1 6 6 C 1.34774 * 120.63037 * 126.36622 * 5 4 2 7 7 O 1.21701 * 120.00466 * 4.54418 * 6 5 4 8 8 C 1.46661 * 119.99767 * 184.82171 * 6 5 4 9 9 C 1.35143 * 126.38111 * 84.77758 * 8 6 5 10 10 N 1.37008 * 107.88001 * 180.02562 * 9 8 6 11 11 C 1.46506 * 125.65409 * 179.97438 * 10 9 8 12 12 C 1.34620 * 108.69757 * 359.97438 * 10 9 8 13 13 O 1.21732 * 125.72908 * 180.02562 * 12 10 9 14 14 N 1.34758 * 108.54460 * 359.72912 * 12 10 9 15 15 C 1.46498 * 126.18401 * 180.29688 * 14 12 10 16 16 C 1.46926 * 118.73551 * 306.09024 * 5 4 2 17 17 C 1.53188 * 108.77565 * 53.86284 * 16 5 4 18 18 C 1.53039 * 109.49646 * 239.93457 * 2 1 3 19 19 H 1.09004 * 109.46089 * 298.66973 * 18 2 1 20 20 N 1.46500 * 109.46125 * 58.63109 * 18 2 1 21 21 C 1.36940 * 119.99975 * 205.06863 * 20 18 2 22 22 H 1.07997 * 120.00298 * 0.02562 * 21 20 18 23 23 C 1.38816 * 119.99865 * 179.97438 * 21 20 18 24 24 N 1.31621 * 119.99784 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99884 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47281 * 59.99931 * 25 23 21 27 27 H 1.48494 * 109.46837 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47026 * 299.99901 * 25 23 21 29 29 H 1.08998 * 109.47344 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46791 * 300.06640 * 1 2 3 31 31 H 1.09000 * 109.46963 * 60.06159 * 1 2 3 32 32 H 1.08997 * 109.74274 * 55.00330 * 4 2 1 33 33 H 1.09006 * 109.66128 * 294.42774 * 4 2 1 34 34 H 1.08005 * 126.06083 * 359.96100 * 9 8 6 35 35 H 1.09005 * 109.47003 * 89.99795 * 11 10 9 36 36 H 1.08995 * 109.47529 * 209.99530 * 11 10 9 37 37 H 1.08991 * 109.46964 * 330.00255 * 11 10 9 38 38 H 1.09003 * 109.47277 * 270.15596 * 15 14 12 39 39 H 1.08998 * 109.47213 * 30.15564 * 15 14 12 40 40 H 1.08999 * 109.47382 * 150.16135 * 15 14 12 41 41 H 1.08998 * 109.58570 * 173.64742 * 16 5 4 42 42 H 1.09000 * 109.58957 * 294.07415 * 16 5 4 43 43 H 1.08999 * 109.50197 * 65.31823 * 17 16 5 44 44 H 1.09006 * 109.49882 * 185.41251 * 17 16 5 45 45 H 0.97001 * 120.00163 * 25.07009 * 20 18 2 46 46 H 0.97002 * 119.99414 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0417 -0.7288 1.2518 5 7 3.5053 -0.8284 1.1689 6 6 4.2818 -0.3854 2.1775 7 8 3.7716 0.0263 3.2028 8 6 5.7417 -0.3938 2.0370 9 6 6.4966 0.5646 1.4557 10 7 7.8070 0.1720 1.5324 11 6 8.9552 0.9242 1.0202 12 6 7.8648 -1.0194 2.1563 13 8 8.8788 -1.6513 2.3895 14 7 6.6123 -1.3922 2.4852 15 6 6.2312 -2.6226 3.1830 16 6 4.1059 -1.4256 -0.0316 17 6 3.5708 -0.6940 -1.2666 18 6 2.0407 -0.7227 -1.2485 19 1 1.6971 -1.7571 -1.2355 20 7 1.5258 -0.0528 -2.4453 21 6 1.3944 -0.7494 -3.6169 22 1 1.6699 -1.7928 -3.6586 23 6 0.9060 -0.1147 -4.7507 24 7 0.5697 1.1568 -4.6998 25 14 0.7260 -1.0651 -6.3488 26 1 -0.2057 -2.2035 -6.1455 27 1 0.1880 -0.1663 -7.4013 28 1 2.0533 -1.5810 -6.7700 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5149 0.8894 31 1 -0.3633 0.5129 -0.8905 32 1 1.6096 -1.7284 1.2983 33 1 1.7636 -0.1663 2.1431 34 1 6.1316 1.4776 1.0089 35 1 9.3302 1.5892 1.7982 36 1 9.7420 0.2301 0.7251 37 1 8.6474 1.5132 0.1562 38 1 6.0460 -3.4114 2.4538 39 1 7.0377 -2.9267 3.8502 40 1 5.3262 -2.4455 3.7641 41 1 5.1901 -1.3230 0.0126 42 1 3.8386 -2.4808 -0.0876 43 1 3.9154 0.3400 -1.2548 44 1 3.9333 -1.1885 -2.1679 45 1 1.2780 0.8843 -2.4078 46 1 0.2281 1.6002 -5.4920 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036306539.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:41 Heat of formation + Delta-G solvation = 3.327193 kcal Electronic energy + Delta-G solvation = -28310.168555 eV Core-core repulsion = 24429.803901 eV Total energy + Delta-G solvation = -3880.364654 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.62582 -40.04339 -37.77654 -36.90263 -35.63168 -34.70052 -32.92346 -31.56124 -30.83878 -29.43695 -28.44351 -26.58316 -26.13630 -25.09281 -23.36866 -22.48776 -21.73112 -20.98643 -20.05543 -19.23623 -17.84387 -17.21393 -17.08321 -16.59331 -16.14497 -15.61686 -15.33769 -14.99148 -14.74207 -14.36574 -14.32095 -14.06622 -13.82729 -13.66119 -13.38674 -13.18069 -13.02457 -12.78502 -12.62840 -12.50848 -12.34402 -11.90405 -11.67501 -11.63786 -11.24355 -10.97890 -10.87292 -10.77459 -10.66538 -10.48245 -10.27734 -10.18521 -10.05026 -9.80578 -9.69262 -8.96097 -8.64567 -7.94922 -7.02653 -5.83012 -3.11931 1.61868 1.77128 2.49110 2.66643 2.74927 3.35568 3.39021 3.44232 3.44944 4.33576 4.52232 4.55502 4.81509 4.85320 4.98470 5.00005 5.08266 5.14181 5.18040 5.19908 5.28281 5.29157 5.35019 5.45337 5.54538 5.60950 5.69216 5.71337 5.86501 5.99103 6.05960 6.11670 6.23257 6.27966 6.36492 6.40137 6.47183 6.53482 6.73980 6.85037 6.97236 7.03443 7.28032 7.63132 7.94970 8.04926 8.35251 9.46877 10.03547 10.38290 11.39282 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015755 B = 0.003328 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.794159 B = 8411.721753 C = 9324.264514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 H 0.071 0.929 4 C 0.120 3.880 5 N -0.589 5.589 6 C 0.593 3.407 7 O -0.530 6.530 8 C -0.024 4.024 9 C 0.045 3.955 10 N -0.525 5.525 11 C 0.097 3.903 12 C 0.650 3.350 13 O -0.570 6.570 14 N -0.517 5.517 15 C 0.100 3.900 16 C 0.108 3.892 17 C -0.150 4.150 18 C 0.183 3.817 19 H 0.048 0.952 20 N -0.720 5.720 21 C -0.241 4.241 22 H 0.069 0.931 23 C -0.010 4.010 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.051 0.949 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.190 0.810 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.384 0.616 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.511 -2.364 13.564 17.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 H 0.089 0.911 4 C -0.003 4.003 5 N -0.321 5.321 6 C 0.377 3.623 7 O -0.406 6.406 8 C -0.132 4.132 9 C -0.083 4.083 10 N -0.243 5.243 11 C -0.044 4.044 12 C 0.353 3.647 13 O -0.448 6.448 14 N -0.239 5.239 15 C -0.041 4.041 16 C -0.015 4.015 17 C -0.192 4.192 18 C 0.073 3.927 19 H 0.066 0.934 20 N -0.360 5.360 21 C -0.372 4.372 22 H 0.087 0.913 23 C -0.207 4.207 24 N -0.580 5.580 25 Si 0.736 3.264 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.207 0.793 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.218 0.782 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.970 -2.758 14.127 18.097 hybrid contribution -0.132 -0.113 -1.138 1.152 sum 10.838 -2.871 12.988 17.158 Atomic orbital electron populations 1.21660 0.93964 1.01853 1.01957 1.21831 0.96700 1.00022 0.94394 0.91051 1.21914 0.77461 1.01253 0.99626 1.48166 1.07311 1.58663 1.17977 1.16876 0.83861 0.78161 0.83385 1.90850 1.74415 1.47021 1.28348 1.19734 0.91699 0.92796 1.08960 1.21785 0.81949 1.00660 1.03884 1.44818 1.07399 1.19389 1.52651 1.21834 0.86577 0.96252 0.99754 1.16069 0.83657 0.82342 0.82658 1.91030 1.31512 1.59037 1.63225 1.45254 1.05711 1.19857 1.53057 1.21778 1.02298 0.83090 0.96957 1.21901 0.97822 0.97357 0.84456 1.22692 1.00370 1.00406 0.95684 1.20204 0.90296 0.95768 0.86456 0.93377 1.42389 1.76471 1.11399 1.05749 1.19164 1.36177 0.94082 0.87747 0.91297 1.24717 1.01932 0.95992 0.98021 1.69645 1.49794 1.09477 1.29068 0.86312 0.77761 0.78755 0.83599 1.21281 1.21734 1.21323 0.93007 0.93734 0.90669 0.91095 0.89082 0.79305 0.91072 0.89417 0.89349 0.91046 0.89370 0.89827 0.90523 0.91254 0.92054 0.90505 0.78188 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.03 37.16 0.34 -1.70 16 2 C -0.11 -1.62 2.47 -90.28 -0.22 -1.85 16 3 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.12 1.54 5.73 -3.49 -0.02 1.52 16 5 N -0.59 -7.45 2.97 -174.05 -0.52 -7.96 16 6 C 0.59 7.96 7.06 -12.86 -0.09 7.87 16 7 O -0.53 -8.64 16.54 5.19 0.09 -8.55 16 8 C -0.02 -0.29 4.64 -81.91 -0.38 -0.67 16 9 C 0.04 0.46 11.23 -16.34 -0.18 0.28 16 10 N -0.53 -5.68 3.12 -128.78 -0.40 -6.09 16 11 C 0.10 0.70 11.01 59.85 0.66 1.35 16 12 C 0.65 8.88 8.49 -87.08 -0.74 8.14 16 13 O -0.57 -9.42 17.59 5.16 0.09 -9.33 16 14 N -0.52 -6.36 3.21 -124.83 -0.40 -6.76 16 15 C 0.10 0.97 10.92 59.85 0.65 1.62 16 16 C 0.11 1.31 6.35 -3.71 -0.02 1.28 16 17 C -0.15 -2.28 5.66 -26.61 -0.15 -2.44 16 18 C 0.18 3.18 2.19 -67.89 -0.15 3.03 16 19 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 20 N -0.72 -16.30 4.41 -53.38 -0.24 -16.53 16 21 C -0.24 -6.19 9.93 -15.06 -0.15 -6.34 16 22 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 23 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 24 N -0.93 -26.79 13.06 55.49 0.72 -26.06 16 25 Si 0.90 21.44 29.55 -169.99 -5.02 16.41 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.34 7.36 -51.93 -0.38 0.96 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.20 7.03 -51.93 -0.37 0.84 16 34 H 0.19 1.46 8.06 -52.48 -0.42 1.04 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.66 8.04 -51.93 -0.42 0.24 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 40 H 0.08 0.77 7.90 -51.93 -0.41 0.36 16 41 H 0.08 0.88 6.20 -51.93 -0.32 0.56 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 45 H 0.38 9.42 7.50 -40.82 -0.31 9.11 16 46 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 377.79 15.07 5.69 5.69 Total: -1.00 -33.23 377.79 -7.78 -41.01 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -7.24 Total: 6.44 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: -0.56 Total: 11.73 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: -0.83 Total: -63.40 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.18 Total: -17.88 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.23 -7.78 -41.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036306539.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.340 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds