Wall clock time and date at job start Fri Apr 10 2020 18:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.49943 * 2 1 4 4 C 1.53623 * 109.45864 * 120.20991 * 2 1 3 5 5 N 1.46928 * 108.54413 * 174.74073 * 4 2 1 6 6 C 1.34774 * 120.63037 * 126.36622 * 5 4 2 7 7 O 1.21701 * 120.00466 * 4.54418 * 6 5 4 8 8 C 1.46661 * 119.99767 * 184.82171 * 6 5 4 9 9 C 1.35143 * 126.38111 * 84.77758 * 8 6 5 10 10 N 1.37008 * 107.88001 * 180.02562 * 9 8 6 11 11 C 1.46506 * 125.65409 * 179.97438 * 10 9 8 12 12 C 1.34620 * 108.69757 * 359.97438 * 10 9 8 13 13 O 1.21732 * 125.72908 * 180.02562 * 12 10 9 14 14 N 1.34758 * 108.54460 * 359.72912 * 12 10 9 15 15 C 1.46498 * 126.18401 * 180.29688 * 14 12 10 16 16 C 1.46926 * 118.73551 * 306.09024 * 5 4 2 17 17 C 1.53188 * 108.77565 * 53.86284 * 16 5 4 18 18 C 1.53039 * 109.49646 * 239.93457 * 2 1 3 19 19 H 1.09004 * 109.46089 * 298.66973 * 18 2 1 20 20 N 1.46500 * 109.46125 * 58.63109 * 18 2 1 21 21 C 1.36940 * 119.99975 * 205.06863 * 20 18 2 22 22 H 1.07997 * 120.00298 * 0.02562 * 21 20 18 23 23 C 1.38816 * 119.99865 * 179.97438 * 21 20 18 24 24 N 1.31621 * 119.99784 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99884 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47281 * 59.99931 * 25 23 21 27 27 H 1.48494 * 109.46837 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47026 * 299.99901 * 25 23 21 29 29 H 1.08998 * 109.47344 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46791 * 300.06640 * 1 2 3 31 31 H 1.09000 * 109.46963 * 60.06159 * 1 2 3 32 32 H 1.08997 * 109.74274 * 55.00330 * 4 2 1 33 33 H 1.09006 * 109.66128 * 294.42774 * 4 2 1 34 34 H 1.08005 * 126.06083 * 359.96100 * 9 8 6 35 35 H 1.09005 * 109.47003 * 89.99795 * 11 10 9 36 36 H 1.08995 * 109.47529 * 209.99530 * 11 10 9 37 37 H 1.08991 * 109.46964 * 330.00255 * 11 10 9 38 38 H 1.09003 * 109.47277 * 270.15596 * 15 14 12 39 39 H 1.08998 * 109.47213 * 30.15564 * 15 14 12 40 40 H 1.08999 * 109.47382 * 150.16135 * 15 14 12 41 41 H 1.08998 * 109.58570 * 173.64742 * 16 5 4 42 42 H 1.09000 * 109.58957 * 294.07415 * 16 5 4 43 43 H 1.08999 * 109.50197 * 65.31823 * 17 16 5 44 44 H 1.09006 * 109.49882 * 185.41251 * 17 16 5 45 45 H 0.97001 * 120.00163 * 25.07009 * 20 18 2 46 46 H 0.97002 * 119.99414 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0417 -0.7288 1.2518 5 7 3.5053 -0.8284 1.1689 6 6 4.2818 -0.3854 2.1775 7 8 3.7716 0.0263 3.2028 8 6 5.7417 -0.3938 2.0370 9 6 6.4966 0.5646 1.4557 10 7 7.8070 0.1720 1.5324 11 6 8.9552 0.9242 1.0202 12 6 7.8648 -1.0194 2.1563 13 8 8.8788 -1.6513 2.3895 14 7 6.6123 -1.3922 2.4852 15 6 6.2312 -2.6226 3.1830 16 6 4.1059 -1.4256 -0.0316 17 6 3.5708 -0.6940 -1.2666 18 6 2.0407 -0.7227 -1.2485 19 1 1.6971 -1.7571 -1.2355 20 7 1.5258 -0.0528 -2.4453 21 6 1.3944 -0.7494 -3.6169 22 1 1.6699 -1.7928 -3.6586 23 6 0.9060 -0.1147 -4.7507 24 7 0.5697 1.1568 -4.6998 25 14 0.7260 -1.0651 -6.3488 26 1 -0.2057 -2.2035 -6.1455 27 1 0.1880 -0.1663 -7.4013 28 1 2.0533 -1.5810 -6.7700 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5149 0.8894 31 1 -0.3633 0.5129 -0.8905 32 1 1.6096 -1.7284 1.2983 33 1 1.7636 -0.1663 2.1431 34 1 6.1316 1.4776 1.0089 35 1 9.3302 1.5892 1.7982 36 1 9.7420 0.2301 0.7251 37 1 8.6474 1.5132 0.1562 38 1 6.0460 -3.4114 2.4538 39 1 7.0377 -2.9267 3.8502 40 1 5.3262 -2.4455 3.7641 41 1 5.1901 -1.3230 0.0126 42 1 3.8386 -2.4808 -0.0876 43 1 3.9154 0.3400 -1.2548 44 1 3.9333 -1.1885 -2.1679 45 1 1.2780 0.8843 -2.4078 46 1 0.2281 1.6002 -5.4920 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036306539.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:40 Heat of formation + Delta-G solvation = -17.670081 kcal Electronic energy + Delta-G solvation = -28311.079065 eV Core-core repulsion = 24429.803901 eV Total energy + Delta-G solvation = -3881.275164 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.53438 -41.15265 -39.02923 -37.96067 -36.46415 -36.17241 -34.41962 -33.03390 -31.66647 -31.01019 -29.35849 -27.59262 -27.06246 -26.55111 -24.75028 -23.58571 -23.04276 -21.92460 -21.21474 -20.37667 -19.03803 -18.78016 -18.10718 -17.53588 -17.19722 -16.72992 -16.63082 -16.19838 -15.76692 -15.65092 -15.43106 -15.23977 -15.02808 -14.84957 -14.64442 -14.29554 -13.99485 -13.88659 -13.62605 -13.44979 -13.30889 -13.15251 -12.96792 -12.79928 -12.72910 -12.59182 -12.39858 -12.17654 -12.02785 -11.80312 -11.77717 -11.63248 -11.21668 -11.10606 -10.92847 -10.80803 -9.76039 -8.93299 -8.85715 -7.87886 -5.14445 0.74432 0.87540 1.51549 1.52393 1.54876 1.58331 1.68266 1.76224 2.45821 2.60919 3.39508 3.46056 3.76043 3.84122 3.87077 4.04162 4.08071 4.10379 4.20308 4.34182 4.36516 4.37604 4.41424 4.50172 4.53815 4.62904 4.71064 4.78192 4.81867 4.82908 4.85467 4.93497 5.01026 5.06409 5.19515 5.26514 5.33932 5.45665 5.53094 5.59541 5.62928 5.67249 6.14599 6.22841 6.34168 6.90659 7.08801 7.41310 8.18402 8.40600 9.35293 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015755 B = 0.003328 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.794159 B = 8411.721753 C = 9324.264514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 H 0.062 0.938 4 C 0.127 3.873 5 N -0.586 5.586 6 C 0.602 3.398 7 O -0.560 6.560 8 C -0.049 4.049 9 C 0.064 3.936 10 N -0.520 5.520 11 C 0.089 3.911 12 C 0.634 3.366 13 O -0.608 6.608 14 N -0.517 5.517 15 C 0.095 3.905 16 C 0.121 3.879 17 C -0.139 4.139 18 C 0.178 3.822 19 H 0.046 0.954 20 N -0.730 5.730 21 C -0.230 4.230 22 H 0.076 0.924 23 C -0.072 4.072 24 N -0.969 5.969 25 Si 0.963 3.037 26 H -0.281 1.281 27 H -0.301 1.301 28 H -0.280 1.280 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.219 0.781 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.372 0.628 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.203 -3.021 14.126 18.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.119 4.119 3 H 0.080 0.920 4 C 0.005 3.995 5 N -0.316 5.316 6 C 0.388 3.612 7 O -0.438 6.438 8 C -0.157 4.157 9 C -0.064 4.064 10 N -0.236 5.236 11 C -0.051 4.051 12 C 0.337 3.663 13 O -0.490 6.490 14 N -0.238 5.238 15 C -0.046 4.046 16 C -0.002 4.002 17 C -0.180 4.180 18 C 0.070 3.930 19 H 0.064 0.936 20 N -0.369 5.369 21 C -0.362 4.362 22 H 0.094 0.906 23 C -0.265 4.265 24 N -0.620 5.620 25 Si 0.793 3.207 26 H -0.207 1.207 27 H -0.228 1.228 28 H -0.206 1.206 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.235 0.765 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.135 0.865 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.204 0.796 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 11.680 -3.448 14.709 19.096 hybrid contribution -0.329 0.101 -1.246 1.293 sum 11.350 -3.348 13.463 17.925 Atomic orbital electron populations 1.21582 0.94022 1.01992 1.01313 1.21690 0.96595 0.99440 0.94159 0.91989 1.21831 0.77640 1.01879 0.98171 1.48152 1.07205 1.58319 1.17966 1.16905 0.84238 0.77219 0.82829 1.90839 1.75102 1.48329 1.29529 1.19623 0.91131 0.93838 1.11063 1.22284 0.81407 1.00685 1.02070 1.45069 1.08459 1.18636 1.51407 1.22148 0.85532 0.96199 1.01242 1.16295 0.83555 0.83122 0.83350 1.90990 1.32726 1.60302 1.64949 1.45388 1.05390 1.20357 1.52633 1.21940 1.02450 0.82791 0.97399 1.21800 0.98338 0.97508 0.82562 1.22460 0.98315 1.00449 0.96798 1.20445 0.91619 0.95367 0.85607 0.93558 1.42558 1.76831 1.10893 1.06632 1.19538 1.33721 0.94360 0.88604 0.90629 1.25403 1.03233 0.96824 1.01016 1.69796 1.51971 1.10982 1.29255 0.85368 0.77813 0.77423 0.80098 1.20695 1.22795 1.20602 0.92460 0.91506 0.94128 0.89377 0.88936 0.76475 0.89737 0.90024 0.86486 0.89575 0.89313 0.89412 0.89257 0.89713 0.92614 0.91830 0.79615 0.94317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 9.03 71.98 0.65 -3.13 16 2 C -0.10 -2.79 2.47 -10.57 -0.03 -2.81 16 3 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 4 C 0.13 2.94 5.73 86.51 0.50 3.44 16 5 N -0.59 -13.25 2.97 -822.79 -2.44 -15.69 16 6 C 0.60 14.78 7.06 86.44 0.61 15.39 16 7 O -0.56 -17.20 16.54 -4.35 -0.07 -17.27 16 8 C -0.05 -1.07 4.64 39.35 0.18 -0.89 16 9 C 0.06 1.13 11.23 83.17 0.93 2.07 16 10 N -0.52 -10.10 3.12 -679.65 -2.12 -12.22 16 11 C 0.09 1.05 11.01 127.77 1.41 2.46 16 12 C 0.63 16.53 8.49 179.11 1.52 18.05 16 13 O -0.61 -19.89 17.59 -4.45 -0.08 -19.97 16 14 N -0.52 -11.86 3.21 -667.05 -2.14 -14.01 16 15 C 0.09 1.70 10.92 127.77 1.39 3.10 16 16 C 0.12 2.59 6.35 86.36 0.55 3.14 16 17 C -0.14 -3.98 5.66 30.67 0.17 -3.81 16 18 C 0.18 5.96 2.19 45.02 0.10 6.06 16 19 H 0.05 1.58 8.08 -2.38 -0.02 1.57 16 20 N -0.73 -33.03 4.41 -322.80 -1.42 -34.45 16 21 C -0.23 -11.77 9.93 84.03 0.83 -10.93 16 22 H 0.08 3.70 7.83 -2.91 -0.02 3.67 16 23 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 24 N -0.97 -56.76 13.06 21.65 0.28 -56.48 16 25 Si 0.96 44.18 29.55 68.60 2.03 46.21 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 27 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 28 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.04 1.45 7.36 -2.39 -0.02 1.44 16 32 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.09 2.21 7.03 -2.38 -0.02 2.20 16 34 H 0.22 2.52 8.06 -2.91 -0.02 2.50 16 35 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.08 1.11 8.04 -2.39 -0.02 1.09 16 37 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 39 H 0.09 1.57 8.08 -2.39 -0.02 1.55 16 40 H 0.09 1.49 7.90 -2.39 -0.02 1.47 16 41 H 0.09 1.77 6.20 -2.39 -0.01 1.76 16 42 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 45 H 0.37 18.56 7.50 -92.71 -0.70 17.86 16 46 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -72.34 377.79 3.61 -68.73 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.29 Total: 26.49 kcal Atomic # 6 Polarization: 19.37 SS G_CDS: 9.29 Total: 28.66 kcal Atomic # 7 Polarization: -125.00 SS G_CDS: -7.85 Total: -132.85 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -0.15 Total: -37.24 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -72.34 3.61 -68.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036306539.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.058 kcal (2) G-P(sol) polarization free energy of solvation -72.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds