Wall clock time and date at job start Fri Apr 10 2020 18:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 6 6 C 1.34264 * 125.75333 * 74.72058 * 5 2 1 7 7 C 1.38044 * 107.42070 * 179.84725 * 6 5 2 8 8 C 1.47427 * 126.41771 * 180.12508 * 7 6 5 9 9 O 1.21604 * 119.99574 * 0.30998 * 8 7 6 10 10 N 1.34773 * 119.99998 * 180.31885 * 8 7 6 11 11 C 1.46506 * 119.99844 * 179.97438 * 10 8 7 12 12 H 1.08994 * 110.88840 * 34.29584 * 11 10 8 13 13 C 1.54908 * 111.00135 * 270.41729 * 11 10 8 14 14 N 1.47472 * 104.80973 * 204.95217 * 13 11 10 15 15 C 1.36941 * 125.62643 * 204.14759 * 14 13 11 16 16 H 1.07990 * 120.00096 * 359.93300 * 15 14 13 17 17 C 1.38815 * 119.99415 * 179.97438 * 15 14 13 18 18 N 1.31619 * 120.00428 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99610 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47257 * 90.00103 * 19 17 15 21 21 H 1.48499 * 109.47043 * 210.00158 * 19 17 15 22 22 H 1.48503 * 109.47049 * 329.99985 * 19 17 15 23 23 C 1.47024 * 108.72240 * 24.06744 * 14 13 11 24 24 C 1.54323 * 107.27167 * 358.97947 * 23 14 13 25 25 H 1.08996 * 110.72177 * 96.16441 * 24 23 14 26 26 O 1.42899 * 110.87301 * 219.37377 * 24 23 14 27 27 C 1.41293 * 107.16899 * 0.41082 * 7 6 5 28 28 N 1.30452 * 108.02122 * 359.74756 * 27 7 6 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 36 36 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 38 38 H 1.08002 * 126.28486 * 359.97438 * 6 5 2 39 39 H 0.96997 * 120.00131 * 359.97438 * 10 8 7 40 40 H 1.09007 * 110.36854 * 323.75028 * 13 11 10 41 41 H 1.09002 * 110.36838 * 86.08144 * 13 11 10 42 42 H 0.96997 * 119.99882 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.88210 * 239.56031 * 23 14 13 44 44 H 1.09002 * 110.00833 * 118.46562 * 23 14 13 45 45 H 0.96705 * 113.99632 * 293.60996 * 26 24 23 46 46 H 1.07994 * 125.98838 * 179.72602 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.0183 -0.6906 -1.1961 6 6 2.0091 -0.1981 -2.4451 7 6 2.5570 -1.1581 -3.2720 8 6 2.7504 -1.0508 -4.7296 9 8 2.4179 -0.0375 -5.3140 10 7 3.2956 -2.0756 -5.4143 11 6 3.4873 -1.9691 -6.8629 12 1 3.7314 -0.9459 -7.1484 13 6 2.2387 -2.4759 -7.6269 14 7 2.7475 -2.8913 -8.9472 15 6 2.0107 -2.9639 -10.0993 16 1 0.9623 -2.7051 -10.0869 17 6 2.6113 -3.3711 -11.2826 18 7 3.8890 -3.6868 -11.2976 19 14 1.6061 -3.4709 -12.8540 20 1 1.6650 -2.1675 -13.5629 21 1 2.1596 -4.5357 -13.7288 22 1 0.1947 -3.7892 -12.5193 23 6 4.1768 -3.2124 -8.8225 24 6 4.5770 -2.9585 -7.3538 25 1 4.5441 -3.8844 -6.7796 26 8 5.8734 -2.3626 -7.2751 27 6 2.8915 -2.2656 -2.4609 28 7 2.5675 -1.9772 -1.2306 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 -1.7489 1.2492 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -0.2075 2.1393 38 1 1.6425 0.7719 -2.7470 39 1 3.5610 -2.8837 -4.9481 40 1 1.7949 -3.3253 -7.1074 41 1 1.5091 -1.6735 -7.7360 42 1 4.3087 -3.9709 -12.1246 43 1 4.7601 -2.5699 -9.4820 44 1 4.3477 -4.2583 -9.0777 45 1 6.5904 -2.9402 -7.5708 46 1 3.3371 -3.1890 -2.8000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077275943.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:51 Heat of formation + Delta-G solvation = -9.073015 kcal Electronic energy + Delta-G solvation = -27285.009441 eV Core-core repulsion = 23404.107074 eV Total energy + Delta-G solvation = -3880.902367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.50229 -40.71643 -39.21579 -37.66286 -36.65335 -35.51194 -33.63740 -31.82425 -31.39851 -30.00886 -28.71636 -28.38148 -28.25898 -26.41765 -24.26948 -23.27677 -22.31112 -21.84035 -21.04119 -20.46126 -19.12606 -18.49772 -18.19822 -17.29635 -17.03701 -16.52158 -16.47018 -15.84201 -15.69228 -15.57651 -15.51924 -14.90377 -14.65605 -14.53654 -14.44573 -14.15746 -13.81896 -13.71901 -13.23596 -13.22897 -13.14548 -13.12343 -13.09417 -12.75014 -12.73497 -12.72508 -12.38260 -12.22211 -12.07965 -11.87356 -11.81808 -11.50382 -11.08309 -10.79642 -10.75066 -10.53507 -10.18637 -9.65261 -8.95345 -7.87604 -5.24691 0.53816 1.18987 1.31634 1.46240 1.48724 1.57114 2.18978 2.46595 2.50779 3.15510 3.31981 3.35357 3.57971 3.73167 3.76033 3.81937 3.85966 3.93318 4.07533 4.10435 4.22377 4.35080 4.47624 4.58484 4.59522 4.63292 4.69132 4.70577 4.78956 4.82911 4.84264 4.85640 5.06861 5.09186 5.21450 5.23387 5.38293 5.45434 5.46426 5.53385 5.68067 5.93176 6.14852 6.52023 6.67575 6.89947 7.06063 7.32445 7.70453 8.33156 9.22182 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025974 B = 0.002453 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.729713 B =11409.777340 C =11942.328940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.165 3.835 3 C -0.160 4.160 4 C -0.139 4.139 5 N -0.345 5.345 6 C 0.131 3.869 7 C -0.310 4.310 8 C 0.594 3.406 9 O -0.595 6.595 10 N -0.697 5.697 11 C 0.156 3.844 12 H 0.070 0.930 13 C 0.131 3.869 14 N -0.622 5.622 15 C -0.247 4.247 16 H 0.081 0.919 17 C -0.063 4.063 18 N -0.949 5.949 19 Si 0.981 3.019 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.269 1.269 23 C 0.162 3.838 24 C 0.092 3.908 25 H 0.096 0.904 26 O -0.569 6.569 27 C 0.084 3.916 28 N -0.311 5.311 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.054 0.946 32 H 0.109 0.891 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.101 0.899 38 H 0.195 0.805 39 H 0.414 0.586 40 H 0.043 0.957 41 H 0.033 0.967 42 H 0.249 0.751 43 H 0.020 0.980 44 H 0.027 0.973 45 H 0.396 0.604 46 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.256 4.780 28.118 28.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.085 3.915 3 C -0.218 4.218 4 C -0.196 4.196 5 N -0.124 5.124 6 C -0.022 4.022 7 C -0.325 4.325 8 C 0.384 3.616 9 O -0.477 6.477 10 N -0.348 5.348 11 C 0.049 3.951 12 H 0.089 0.911 13 C 0.005 3.995 14 N -0.350 5.350 15 C -0.375 4.375 16 H 0.099 0.901 17 C -0.256 4.256 18 N -0.597 5.597 19 Si 0.809 3.191 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.194 1.194 23 C 0.036 3.964 24 C 0.031 3.969 25 H 0.114 0.886 26 O -0.376 6.376 27 C -0.103 4.103 28 N -0.130 5.130 29 H 0.081 0.919 30 H 0.125 0.875 31 H 0.073 0.927 32 H 0.128 0.872 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.119 0.881 38 H 0.212 0.788 39 H 0.252 0.748 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.038 0.962 44 H 0.046 0.954 45 H 0.246 0.754 46 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -2.863 5.564 29.121 29.786 hybrid contribution 0.165 -0.635 -2.441 2.528 sum -2.699 4.928 26.680 27.266 Atomic orbital electron populations 1.22290 0.91523 1.03092 1.04672 1.21279 0.95468 0.92715 0.82086 1.22307 1.01960 0.92354 1.05197 1.21904 1.01528 1.00935 0.95243 1.49168 1.44970 1.11604 1.06694 1.23047 0.95331 0.99493 0.84372 1.20097 1.20118 0.99198 0.93114 1.17650 0.75696 0.82138 0.86163 1.90753 1.53429 1.31928 1.71566 1.45396 1.63413 1.19142 1.06809 1.21698 0.94136 0.99328 0.79897 0.91134 1.21944 0.94842 0.96828 0.85915 1.44538 1.06996 1.78834 1.04636 1.19445 0.93224 1.38553 0.86322 0.90135 1.25660 0.97447 1.01562 1.00911 1.70128 1.10955 1.52080 1.26548 0.85045 0.78083 0.77002 0.78983 1.21485 1.21576 1.19358 1.21617 0.84703 0.98174 0.91928 1.23148 0.82874 0.94976 0.95877 0.88597 1.86441 1.16165 1.46330 1.88693 1.24458 0.97292 0.99220 0.89364 1.77093 1.18677 0.96166 1.21044 0.91856 0.87454 0.92720 0.87195 0.92256 0.91262 0.92168 0.92621 0.88060 0.78826 0.74818 0.93971 0.94887 0.94136 0.96179 0.95449 0.75380 0.76860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 8.71 71.98 0.63 -0.85 16 2 C 0.17 1.95 1.23 3.60 0.00 1.95 16 3 C -0.16 -1.34 8.29 71.98 0.60 -0.74 16 4 C -0.14 -1.44 8.07 71.98 0.58 -0.86 16 5 N -0.35 -6.47 3.41 -306.13 -1.04 -7.51 16 6 C 0.13 2.84 10.39 84.27 0.88 3.72 16 7 C -0.31 -7.85 6.13 -20.15 -0.12 -7.97 16 8 C 0.59 19.34 7.81 86.66 0.68 20.01 16 9 O -0.60 -24.57 16.59 -4.04 -0.07 -24.64 16 10 N -0.70 -20.92 5.21 -439.21 -2.29 -23.20 16 11 C 0.16 6.04 3.09 46.38 0.14 6.18 16 12 H 0.07 3.24 7.63 -2.39 -0.02 3.22 16 13 C 0.13 5.80 6.93 86.85 0.60 6.41 16 14 N -0.62 -33.02 3.40 -691.86 -2.35 -35.37 16 15 C -0.25 -14.25 10.28 84.03 0.86 -13.38 16 16 H 0.08 4.50 7.83 -2.92 -0.02 4.48 16 17 C -0.06 -3.61 5.49 84.86 0.47 -3.14 16 18 N -0.95 -56.85 10.31 21.65 0.22 -56.62 16 19 Si 0.98 46.40 29.55 68.60 2.03 48.43 16 20 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 C 0.16 7.91 5.15 86.73 0.45 8.36 16 24 C 0.09 3.33 3.96 31.78 0.13 3.45 16 25 H 0.10 2.82 8.00 -2.39 -0.02 2.80 16 26 O -0.57 -19.24 13.40 -148.98 -2.00 -21.23 16 27 C 0.08 1.73 11.50 85.65 0.99 2.72 16 28 N -0.31 -6.67 11.56 -56.27 -0.65 -7.32 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.11 0.34 8.14 -2.39 -0.02 0.33 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.59 7.35 -2.39 -0.02 0.57 16 35 H 0.06 0.79 8.03 -2.39 -0.02 0.77 16 36 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.10 0.47 8.14 -2.39 -0.02 0.46 16 38 H 0.19 3.64 7.54 -2.91 -0.02 3.62 16 39 H 0.41 9.18 7.49 -92.71 -0.69 8.49 16 40 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 41 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.25 14.47 8.31 -92.71 -0.77 13.69 16 43 H 0.02 1.13 7.30 -2.39 -0.02 1.11 16 44 H 0.03 1.44 7.50 -2.39 -0.02 1.42 16 45 H 0.40 9.85 9.12 -74.05 -0.68 9.18 16 46 H 0.21 2.91 7.50 -2.91 -0.02 2.89 16 Total: -1.00 -79.75 378.66 0.36 -79.39 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -0.37 Total: 22.23 kcal Atomic # 6 Polarization: 18.98 SS G_CDS: 6.87 Total: 25.86 kcal Atomic # 7 Polarization: -123.93 SS G_CDS: -6.11 Total: -130.03 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -2.06 Total: -45.87 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -79.75 0.36 -79.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077275943.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.321 kcal (2) G-P(sol) polarization free energy of solvation -79.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds