Wall clock time and date at job start Fri Apr 10 2020 18:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.46769 * 2 1 4 4 C 1.53004 * 109.47317 * 240.00522 * 2 1 3 5 5 C 1.50698 * 109.47586 * 120.00192 * 2 1 3 6 6 C 1.39671 * 126.07318 * 75.26701 * 5 2 1 7 7 C 1.38397 * 105.36244 * 180.14790 * 6 5 2 8 8 C 1.47164 * 126.88567 * 179.91207 * 7 6 5 9 9 O 1.21631 * 119.99695 * 359.71827 * 8 7 6 10 10 N 1.34776 * 120.00220 * 179.70732 * 8 7 6 11 11 C 1.46496 * 120.00084 * 180.02562 * 10 8 7 12 12 H 1.09008 * 110.88367 * 37.43390 * 11 10 8 13 13 C 1.54908 * 111.00674 * 273.55347 * 11 10 8 14 14 N 1.47425 * 104.92961 * 204.86080 * 13 11 10 15 15 C 1.36938 * 125.65179 * 204.15650 * 14 13 11 16 16 H 1.08005 * 119.99558 * 359.97438 * 15 14 13 17 17 C 1.38811 * 120.00146 * 180.02562 * 15 14 13 18 18 N 1.31620 * 120.00086 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99779 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47294 * 89.99594 * 19 17 15 21 21 H 1.48503 * 109.46797 * 209.99511 * 19 17 15 22 22 H 1.48500 * 109.47035 * 329.99310 * 19 17 15 23 23 C 1.47290 * 108.55742 * 24.15407 * 14 13 11 24 24 C 1.54325 * 107.30599 * 358.92448 * 23 14 13 25 25 H 1.08997 * 110.72163 * 96.18354 * 24 23 14 26 26 O 1.42898 * 110.87178 * 219.38109 * 24 23 14 27 27 N 1.36598 * 106.23079 * 359.65514 * 7 6 5 28 28 H 0.97004 * 125.19156 * 180.20290 * 27 7 6 29 29 N 1.28442 * 109.62188 * 0.22381 * 27 7 6 30 30 H 1.08999 * 109.46724 * 299.99559 * 1 2 3 31 31 H 1.08990 * 109.47595 * 60.00034 * 1 2 3 32 32 H 1.09004 * 109.46805 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46863 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47231 * 300.00049 * 3 2 1 35 35 H 1.08996 * 109.46898 * 60.00214 * 3 2 1 36 36 H 1.09004 * 109.46578 * 299.99398 * 4 2 1 37 37 H 1.09006 * 109.46864 * 59.99129 * 4 2 1 38 38 H 1.08996 * 109.47016 * 179.97438 * 4 2 1 39 39 H 1.08003 * 127.31445 * 0.06304 * 6 5 2 40 40 H 0.97000 * 119.99844 * 0.02562 * 10 8 7 41 41 H 1.09002 * 110.36632 * 323.75475 * 13 11 10 42 42 H 1.08995 * 110.36781 * 85.96712 * 13 11 10 43 43 H 0.96999 * 120.00175 * 180.02562 * 18 17 15 44 44 H 1.09004 * 109.85762 * 239.50064 * 23 14 13 45 45 H 1.08999 * 109.87327 * 118.35916 * 23 14 13 46 46 H 0.96700 * 114.00884 * 293.61196 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 2.0325 -0.7104 1.2304 6 6 2.0360 -2.0915 1.4388 7 6 2.5818 -2.2709 2.6979 8 6 2.8041 -3.5504 3.3902 9 8 2.4912 -4.5953 2.8520 10 7 3.3545 -3.5643 4.6203 11 6 3.5763 -4.8380 5.3092 12 1 3.8882 -5.6107 4.6064 13 6 2.3114 -5.2749 6.0894 14 7 2.8119 -6.1506 7.1646 15 6 2.0889 -7.1215 7.8048 16 1 1.0587 -7.2960 7.5317 17 6 2.6799 -7.8806 8.8055 18 7 3.9352 -7.6676 9.1387 19 14 1.6938 -9.2055 9.6783 20 1 1.8459 -10.4933 8.9547 21 1 2.1914 -9.3575 11.0692 22 1 0.2602 -8.8190 9.7048 23 6 4.2183 -5.8056 7.4336 24 6 4.6095 -4.6778 6.4555 25 1 4.5092 -3.7024 6.9316 26 8 5.9394 -4.8656 5.9675 27 7 2.8783 -1.0226 3.1669 28 1 3.2777 -0.8299 4.0296 29 7 2.5471 -0.1430 2.2915 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6768 -1.7489 -1.2493 37 1 1.6766 -0.2073 -2.1393 38 1 3.1300 -0.7207 -1.2495 39 1 1.6858 -2.8567 0.7618 40 1 3.6038 -2.7309 5.0495 41 1 1.8071 -4.4058 6.5119 42 1 1.6341 -5.8253 5.4364 43 1 4.3483 -8.1983 9.8377 44 1 4.8517 -6.6770 7.2670 45 1 4.3247 -5.4585 8.4613 46 1 6.6235 -4.7759 6.6450 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077287158.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:55 Heat of formation + Delta-G solvation = -19.737866 kcal Electronic energy + Delta-G solvation = -27270.093074 eV Core-core repulsion = 23388.728244 eV Total energy + Delta-G solvation = -3881.364830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.67157 -40.99093 -39.37725 -37.82764 -36.71072 -35.76186 -33.76464 -32.12808 -31.88614 -30.16862 -28.83677 -28.06286 -28.03979 -26.52050 -24.54026 -23.63398 -22.43712 -22.00109 -21.71949 -20.26916 -19.40750 -19.00641 -18.32918 -17.42823 -16.93568 -16.88217 -16.61706 -16.02478 -15.92349 -15.61927 -15.46201 -14.85054 -14.83696 -14.64835 -14.51873 -14.36546 -14.28050 -13.81633 -13.23737 -13.18566 -13.06539 -12.93505 -12.80407 -12.75576 -12.47605 -12.35488 -12.11450 -11.99727 -11.90615 -11.85789 -11.62001 -11.52413 -11.33833 -10.96366 -10.80104 -10.48317 -10.14752 -10.13498 -8.99979 -7.91485 -5.28445 0.11780 1.44815 1.47033 1.49665 1.55146 1.67624 1.85450 2.05558 2.45590 3.06611 3.28789 3.33802 3.46523 3.55299 3.82051 3.82521 3.99030 4.11597 4.15558 4.22466 4.35326 4.39036 4.47249 4.49176 4.69188 4.78743 4.87269 4.87699 4.89023 4.98486 5.10328 5.11278 5.17146 5.25362 5.28967 5.34890 5.41399 5.49273 5.50279 5.52130 5.63675 5.94122 6.10649 6.29888 6.83253 6.88786 6.97109 7.02339 7.66175 8.28381 9.18507 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025868 B = 0.002453 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.155573 B =11410.544798 C =11963.165921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.014 3.986 3 C -0.131 4.131 4 C -0.138 4.138 5 C 0.036 3.964 6 C -0.156 4.156 7 C -0.040 4.040 8 C 0.593 3.407 9 O -0.559 6.559 10 N -0.694 5.694 11 C 0.155 3.845 12 H 0.077 0.923 13 C 0.130 3.870 14 N -0.622 5.622 15 C -0.247 4.247 16 H 0.081 0.919 17 C -0.061 4.061 18 N -0.948 5.948 19 Si 0.980 3.020 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.269 1.269 23 C 0.160 3.840 24 C 0.093 3.907 25 H 0.098 0.902 26 O -0.568 6.568 27 N -0.364 5.364 28 H 0.457 0.543 29 N -0.268 5.268 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.164 0.836 40 H 0.413 0.587 41 H 0.042 0.958 42 H 0.035 0.965 43 H 0.250 0.750 44 H 0.022 0.978 45 H 0.029 0.971 46 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.155 20.392 -15.735 25.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.012 3.988 3 C -0.188 4.188 4 C -0.196 4.196 5 C -0.122 4.122 6 C -0.185 4.185 7 C -0.169 4.169 8 C 0.379 3.621 9 O -0.436 6.436 10 N -0.346 5.346 11 C 0.048 3.952 12 H 0.095 0.905 13 C 0.004 3.996 14 N -0.349 5.349 15 C -0.376 4.376 16 H 0.099 0.901 17 C -0.254 4.254 18 N -0.596 5.596 19 Si 0.808 3.192 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.194 1.194 23 C 0.034 3.966 24 C 0.032 3.968 25 H 0.116 0.884 26 O -0.376 6.376 27 N -0.082 5.082 28 H 0.305 0.695 29 N -0.101 5.101 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.070 0.930 39 H 0.181 0.819 40 H 0.250 0.750 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.059 0.941 44 H 0.040 0.960 45 H 0.047 0.953 46 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -1.366 20.412 -16.032 25.991 hybrid contribution 0.177 -1.541 1.802 2.378 sum -1.190 18.871 -14.230 23.665 Atomic orbital electron populations 1.21867 0.92549 1.02355 1.02636 1.19067 0.95985 0.95062 0.88658 1.21740 1.00779 0.93841 1.02454 1.21890 1.00988 1.00613 0.96123 1.22301 1.02573 0.91191 0.96147 1.22173 1.03782 0.97298 0.95238 1.21411 1.11343 0.86132 0.98029 1.17231 0.77028 0.87056 0.80808 1.90853 1.52284 1.33473 1.66957 1.45502 1.62792 1.09580 1.16720 1.21812 0.94636 0.85725 0.92983 0.90513 1.21925 0.94613 0.93845 0.89251 1.44561 1.09783 1.39864 1.40737 1.19428 0.94970 1.09802 1.13397 0.90112 1.25640 0.97581 1.02015 1.00181 1.70107 1.12521 1.43318 1.33674 0.85060 0.78145 0.78741 0.77264 1.21471 1.21593 1.19389 1.21688 0.85211 0.94266 0.95415 1.23127 0.82396 0.98577 0.92672 0.88413 1.86433 1.15546 1.95220 1.40402 1.43616 1.45719 1.01848 1.17062 0.69506 1.73074 1.16682 1.19894 1.00489 0.93231 0.89951 0.92572 0.93205 0.90554 0.92783 0.92254 0.89978 0.93016 0.81851 0.74995 0.94013 0.94627 0.94087 0.95970 0.95320 0.75173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.46 71.98 0.61 -1.17 16 2 C 0.01 0.21 0.97 -52.92 -0.05 0.16 16 3 C -0.13 -1.73 8.04 71.99 0.58 -1.15 16 4 C -0.14 -1.76 8.20 71.98 0.59 -1.17 16 5 C 0.04 0.72 5.65 43.05 0.24 0.96 16 6 C -0.16 -3.62 10.12 22.65 0.23 -3.39 16 7 C -0.04 -0.97 7.16 40.78 0.29 -0.68 16 8 C 0.59 17.69 7.80 86.59 0.68 18.36 16 9 O -0.56 -21.73 16.66 -4.13 -0.07 -21.80 16 10 N -0.69 -18.44 5.23 -439.47 -2.30 -20.73 16 11 C 0.15 5.52 3.04 46.38 0.14 5.66 16 12 H 0.08 3.26 7.73 -2.38 -0.02 3.24 16 13 C 0.13 5.46 6.92 86.85 0.60 6.06 16 14 N -0.62 -31.79 3.40 -691.30 -2.35 -34.15 16 15 C -0.25 -13.93 10.28 84.03 0.86 -13.06 16 16 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 17 C -0.06 -3.43 5.49 84.86 0.47 -2.96 16 18 N -0.95 -55.57 10.34 21.65 0.22 -55.34 16 19 Si 0.98 45.56 29.55 68.60 2.03 47.59 16 20 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 23 C 0.16 7.48 5.16 86.68 0.45 7.93 16 24 C 0.09 3.11 3.95 31.78 0.13 3.23 16 25 H 0.10 2.57 8.00 -2.39 -0.02 2.55 16 26 O -0.57 -17.66 13.40 -148.98 -2.00 -19.66 16 27 N -0.36 -6.69 6.85 -48.00 -0.33 -7.02 16 28 H 0.46 5.22 8.22 -220.00 -1.81 3.41 16 29 N -0.27 -5.48 11.48 -47.49 -0.55 -6.03 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.71 16 34 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.05 0.80 8.08 -2.39 -0.02 0.78 16 36 H 0.06 0.78 7.59 -2.39 -0.02 0.77 16 37 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.16 3.68 7.78 -2.91 -0.02 3.65 16 40 H 0.41 7.45 7.70 -92.71 -0.71 6.73 16 41 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 44 H 0.02 1.20 7.31 -2.38 -0.02 1.18 16 45 H 0.03 1.45 7.52 -2.39 -0.02 1.43 16 46 H 0.40 8.93 9.12 -74.06 -0.68 8.25 16 Total: -1.00 -75.10 377.91 -1.71 -76.80 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -2.18 Total: 21.55 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 5.81 Total: 18.79 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -5.30 Total: -123.27 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -2.06 Total: -41.46 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -75.10 -1.71 -76.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077287158.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.063 kcal (2) G-P(sol) polarization free energy of solvation -75.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds