Wall clock time and date at job start Fri Apr 10 2020 18:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47041 * 2 1 4 4 C 1.50697 * 109.47154 * 119.99873 * 2 1 3 5 5 N 1.30499 * 125.65494 * 300.17855 * 4 2 1 6 6 C 1.34127 * 109.25896 * 180.29152 * 5 4 2 7 7 C 1.34674 * 108.01815 * 359.72453 * 6 5 4 8 8 N 1.35047 * 125.64735 * 120.00213 * 4 2 1 9 9 C 1.46499 * 126.39900 * 359.97156 * 8 4 2 10 10 C 1.50701 * 109.46715 * 84.71923 * 9 8 4 11 11 O 1.21279 * 120.00313 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99918 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00409 * 180.02562 * 12 10 9 14 14 H 1.09000 * 110.63760 * 31.85182 * 13 12 10 15 15 C 1.54337 * 110.99733 * 268.77555 * 13 12 10 16 16 N 1.47020 * 107.26210 * 219.59689 * 15 13 12 17 17 C 1.36945 * 125.64525 * 178.85184 * 16 15 13 18 18 H 1.07997 * 119.99756 * 359.71717 * 17 16 15 19 19 C 1.38805 * 119.99878 * 179.71622 * 17 16 15 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.47420 * 108.70626 * 358.58837 * 16 15 13 26 26 C 1.54914 * 104.83159 * 24.35323 * 25 16 15 27 27 H 1.09002 * 111.00120 * 81.06703 * 26 25 16 28 28 O 1.42898 * 111.00461 * 204.87589 * 26 25 16 29 29 H 1.08996 * 109.47027 * 299.99591 * 1 2 3 30 30 H 1.08998 * 109.47301 * 60.00210 * 1 2 3 31 31 H 1.08999 * 109.46666 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46819 * 239.99712 * 2 1 3 33 33 H 1.09002 * 109.47354 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.47048 * 300.00150 * 3 2 1 35 35 H 1.08996 * 109.47199 * 59.99876 * 3 2 1 36 36 H 1.07997 * 125.98579 * 179.72069 * 6 5 4 37 37 H 1.07994 * 126.58597 * 179.97438 * 7 6 5 38 38 H 1.08998 * 109.47255 * 324.71677 * 9 8 4 39 39 H 1.08996 * 109.47288 * 204.71449 * 9 8 4 40 40 H 0.97007 * 120.00343 * 359.97438 * 12 10 9 41 41 H 1.09001 * 109.98748 * 100.12406 * 15 13 12 42 42 H 1.09001 * 109.78230 * 338.95875 * 15 13 12 43 43 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 44 44 H 1.08999 * 110.36700 * 143.19620 * 25 16 15 45 45 H 1.08998 * 110.36896 * 265.40859 * 25 16 15 46 46 H 0.96702 * 114.00296 * 298.55030 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7834 -0.3639 2.4637 6 6 2.3970 -1.2185 3.2958 7 6 3.0461 -2.1327 2.5497 8 7 2.8121 -1.8130 1.2395 9 6 3.3181 -2.5295 0.0662 10 6 4.5862 -1.8728 -0.4151 11 8 5.0240 -0.9016 0.1646 12 7 5.2334 -2.3641 -1.4903 13 6 6.4666 -1.7261 -1.9579 14 1 7.0189 -1.2983 -1.1213 15 6 6.1627 -0.6439 -3.0154 16 7 7.2054 -0.7375 -4.0477 17 6 7.2842 0.0361 -5.1749 18 1 6.5351 0.7902 -5.3657 19 6 8.3269 -0.1491 -6.0722 20 7 9.2397 -1.0686 -5.8399 21 14 8.4341 0.9057 -7.6102 22 1 9.6309 0.5135 -8.3970 23 1 7.2137 0.7073 -8.4325 24 1 8.5433 2.3352 -7.2233 25 6 8.1555 -1.7978 -3.6651 26 6 7.3472 -2.7385 -2.7368 27 1 6.7319 -3.4260 -3.3173 28 8 8.2128 -3.4526 -1.8520 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 2.3745 -1.1800 4.3748 37 1 3.6378 -2.9589 2.9151 38 1 2.5708 -2.5016 -0.7268 39 1 3.5247 -3.5656 0.3343 40 1 4.8832 -3.1407 -1.9543 41 1 6.1847 0.3438 -2.5548 42 1 5.1840 -0.8264 -3.4594 43 1 9.9681 -1.1982 -6.4671 44 1 8.4970 -2.3378 -4.5482 45 1 9.0042 -1.3718 -3.1301 46 1 8.8488 -4.0258 -2.3015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077765183.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:17 Heat of formation + Delta-G solvation = 6.613468 kcal Electronic energy + Delta-G solvation = -27909.289389 eV Core-core repulsion = 24029.067238 eV Total energy + Delta-G solvation = -3880.222150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.25648 -39.79230 -37.94067 -35.42575 -35.18901 -34.23761 -34.07011 -31.84705 -29.18738 -28.74957 -27.83908 -27.20224 -26.71645 -24.47592 -22.94243 -21.63729 -21.05605 -20.70473 -20.14273 -19.16061 -17.73920 -17.46763 -17.02400 -16.77691 -15.85880 -15.44949 -15.09057 -14.87653 -14.67011 -14.34949 -14.03898 -13.85557 -13.68480 -13.45831 -13.37010 -13.00682 -12.91762 -12.79567 -12.37215 -12.19480 -11.98784 -11.58207 -11.58008 -11.38763 -11.25322 -11.11171 -11.04197 -10.87998 -10.40399 -10.27203 -10.03633 -9.96969 -9.80235 -9.62482 -9.34212 -8.98432 -8.79794 -8.36079 -7.01739 -5.80443 -3.23353 1.90181 2.45362 2.51329 3.14055 3.20735 3.33364 3.38040 3.39025 4.26228 4.30156 4.38845 4.48802 4.50686 4.58603 4.68083 4.93986 5.04378 5.15174 5.16141 5.33135 5.42379 5.50695 5.53966 5.58151 5.59428 5.74293 5.74586 5.82403 5.88361 5.96105 6.04059 6.10348 6.25378 6.27737 6.31011 6.53898 6.72215 6.76310 7.06154 7.20707 7.39463 7.47150 7.62389 7.98850 8.09278 8.10950 8.17465 9.05252 9.65796 10.27249 11.23885 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017061 B = 0.003123 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.813710 B = 8964.358415 C =10192.445384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.008 4.008 3 C -0.140 4.140 4 C 0.230 3.770 5 N -0.488 5.488 6 C -0.028 4.028 7 C -0.053 4.053 8 N -0.441 5.441 9 C 0.083 3.917 10 C 0.494 3.506 11 O -0.517 6.517 12 N -0.709 5.709 13 C 0.142 3.858 14 H 0.101 0.899 15 C 0.131 3.869 16 N -0.599 5.599 17 C -0.226 4.226 18 H 0.080 0.920 19 C -0.009 4.009 20 N -0.925 5.925 21 Si 0.919 3.081 22 H -0.289 1.289 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.128 3.872 26 C 0.068 3.932 27 H 0.062 0.938 28 O -0.567 6.567 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.168 0.832 37 H 0.171 0.829 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.400 0.600 41 H 0.033 0.967 42 H 0.030 0.970 43 H 0.255 0.745 44 H 0.114 0.886 45 H 0.026 0.974 46 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.777 -7.614 10.480 18.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 C -0.198 4.198 4 C -0.032 4.032 5 N -0.206 5.206 6 C -0.176 4.176 7 C -0.185 4.185 8 N -0.123 5.123 9 C -0.044 4.044 10 C 0.277 3.723 11 O -0.391 6.391 12 N -0.361 5.361 13 C 0.037 3.963 14 H 0.119 0.881 15 C 0.004 3.996 16 N -0.327 5.327 17 C -0.354 4.354 18 H 0.098 0.902 19 C -0.204 4.204 20 N -0.573 5.573 21 Si 0.749 3.251 22 H -0.215 1.215 23 H -0.210 1.210 24 H -0.210 1.210 25 C 0.002 3.998 26 C 0.007 3.993 27 H 0.080 0.920 28 O -0.372 6.372 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.185 0.815 37 H 0.189 0.811 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.234 0.766 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.065 0.935 44 H 0.132 0.868 45 H 0.044 0.956 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -14.082 -5.965 11.328 19.032 hybrid contribution 1.007 -0.989 -1.582 2.120 sum -13.075 -6.954 9.746 17.728 Atomic orbital electron populations 1.21787 0.93151 1.01914 1.02805 1.19543 0.96327 0.96299 0.90685 1.21760 1.01956 0.93688 1.02361 1.23170 0.96285 0.88104 0.95664 1.70168 1.24662 1.26802 0.98936 1.22204 1.01382 0.94523 0.99459 1.22610 1.08009 1.05262 0.82593 1.44845 1.38348 1.23323 1.05823 1.21691 0.96121 0.97534 0.89058 1.20619 0.85661 0.85006 0.81014 1.90801 1.66513 1.25846 1.55940 1.45903 1.26724 1.33196 1.30242 1.22054 0.83168 0.93459 0.97611 0.88068 1.21606 0.93255 0.95720 0.89035 1.44273 1.26353 1.40603 1.21451 1.19058 1.08231 1.12300 0.95778 0.90198 1.24802 0.96938 0.99356 0.99344 1.69713 1.15165 1.35177 1.37233 0.86088 0.77093 0.79699 0.82250 1.21474 1.21026 1.21037 1.22586 0.90586 0.89102 0.97506 1.23634 0.92068 0.93007 0.90573 0.91972 1.86399 1.51441 1.62793 1.36584 0.91332 0.91790 0.92940 0.90545 0.91992 0.91922 0.91555 0.81469 0.81135 0.86162 0.85975 0.76622 0.94876 0.95181 0.93465 0.86840 0.95639 0.77381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.18 37.16 0.34 -0.95 16 2 C -0.01 -0.09 3.25 -91.77 -0.30 -0.39 16 3 C -0.14 -1.71 9.17 37.15 0.34 -1.36 16 4 C 0.23 3.09 6.39 -155.41 -0.99 2.10 16 5 N -0.49 -7.18 11.25 -10.82 -0.12 -7.31 16 6 C -0.03 -0.36 11.87 -17.81 -0.21 -0.57 16 7 C -0.05 -0.62 11.58 -16.56 -0.19 -0.81 16 8 N -0.44 -5.33 2.24 -115.19 -0.26 -5.58 16 9 C 0.08 0.77 6.16 -5.19 -0.03 0.73 16 10 C 0.49 6.69 7.90 -10.99 -0.09 6.61 16 11 O -0.52 -9.56 16.06 5.56 0.09 -9.47 16 12 N -0.71 -9.30 5.12 -52.03 -0.27 -9.57 16 13 C 0.14 2.50 3.04 -66.09 -0.20 2.30 16 14 H 0.10 2.06 7.55 -51.93 -0.39 1.67 16 15 C 0.13 2.70 7.01 -3.06 -0.02 2.67 16 16 N -0.60 -14.72 3.39 -170.07 -0.58 -15.30 16 17 C -0.23 -6.07 10.27 -15.06 -0.15 -6.23 16 18 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 19 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 20 N -0.92 -25.66 10.09 55.49 0.56 -25.10 16 21 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 25 C 0.13 2.92 5.62 -2.53 -0.01 2.90 16 26 C 0.07 1.18 4.06 -24.58 -0.10 1.08 16 27 H 0.06 0.99 8.01 -51.93 -0.42 0.58 16 28 O -0.57 -9.16 13.47 -35.23 -0.47 -9.64 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.80 6.85 -51.93 -0.36 0.44 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.12 0.79 7.30 -51.93 -0.38 0.41 16 39 H 0.12 0.74 8.13 -51.93 -0.42 0.32 16 40 H 0.40 3.89 8.56 -40.82 -0.35 3.54 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.03 0.59 8.03 -51.93 -0.42 0.17 16 43 H 0.25 6.88 8.31 -40.82 -0.34 6.55 16 44 H 0.11 2.83 5.87 -51.93 -0.31 2.53 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.38 4.66 9.11 45.56 0.42 5.07 16 LS Contribution 380.31 15.07 5.73 5.73 Total: -1.00 -35.02 380.31 -8.46 -43.48 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.40 Total: 8.69 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: -1.72 Total: 7.75 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: -0.66 Total: -62.86 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.39 Total: -19.11 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.02 -8.46 -43.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077765183.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.094 kcal (2) G-P(sol) polarization free energy of solvation -35.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds